Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05735

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,209,257	+		HGI48_RS05730	0.45	-2.2
1,209,257	+		HGI48_RS05730	0.45	-3.0
1,209,257	+		HGI48_RS05730	0.45	-1.1
1,209,257	+		HGI48_RS05730	0.45	-2.4
1,209,270	+				-1.0
1,209,305	-		HGI48_RS05730	0.48	-2.5
1,209,305	-		HGI48_RS05730	0.48	-3.6
1,209,351	+		HGI48_RS05730	0.51	-1.4
1,209,351	+		HGI48_RS05730	0.51	-2.0
1,209,352	-		HGI48_RS05730	0.51	-1.8
1,209,352	-		HGI48_RS05730	0.51	-2.6
1,209,379	+		HGI48_RS05730	0.52	-0.9
1,209,381	+		HGI48_RS05730	0.52	-0.9
1,209,657	-		HGI48_RS05730	0.68	-1.8
1,209,698	+		HGI48_RS05730	0.70	-2.4
1,209,745	-		HGI48_RS05730	0.73	-1.8
1,209,745	-				+0.6
1,209,819	+				+1.2
1,209,819	+		HGI48_RS05730	0.77	-0.8
1,210,156	-				+1.6
1,210,156	-				-1.6
1,210,156	-				-1.8
1,210,159	+				-1.8
1,210,159	+				-1.8
1,210,159	+				-0.8
1,210,159	+				-1.6
1,210,159	+				-0.2
1,210,159	+				-0.4
1,210,160	-				-0.8
1,210,160	-				-3.2
1,210,166	-				-1.8
1,210,187	+				-0.1
1,210,265	+				-0.4
1,210,359	-				-1.8
1,210,427	+		HGI48_RS05735	0.12	-0.4
1,210,428	-		HGI48_RS05735	0.12	-1.8
1,210,463	+		HGI48_RS05735	0.14	-1.0
1,210,463	+		HGI48_RS05735	0.14	-1.2
1,210,515	+		HGI48_RS05735	0.17	-0.3
1,210,515	+		HGI48_RS05735	0.17	-2.5
1,210,516	-		HGI48_RS05735	0.17	-1.4
1,210,516	-		HGI48_RS05735	0.17	+0.6
1,210,516	-		HGI48_RS05735	0.17	-1.0
1,210,519	+				+1.8
1,210,519	+				+0.6
1,210,520	-		HGI48_RS05735	0.17	-3.0
1,210,520	-		HGI48_RS05735	0.17	-0.8
1,210,520	-		HGI48_RS05735	0.17	-1.8
1,210,520	-		HGI48_RS05735	0.17	-0.4
1,210,631	+		HGI48_RS05735	0.23	-1.1
1,210,631	+		HGI48_RS05735	0.23	-2.2
1,210,632	-				-0.4
1,210,632	-		HGI48_RS05735	0.23	-3.0
1,210,632	-		HGI48_RS05735	0.23	-0.6
1,210,632	-		HGI48_RS05735	0.23	-1.4
1,210,770	-		HGI48_RS05735	0.31	-0.6
1,210,778	+		HGI48_RS05735	0.31	-1.4
1,210,778	+				-0.0
1,210,779	-		HGI48_RS05735	0.31	+0.6
1,210,780	+		HGI48_RS05735	0.31	-1.2
1,210,781	-		HGI48_RS05735	0.31	-1.0
1,210,781	-		HGI48_RS05735	0.31	-2.0
1,210,928	+		HGI48_RS05735	0.40	-0.7
1,210,928	+		HGI48_RS05735	0.40	-1.7
1,210,929	-		HGI48_RS05735	0.40	-1.8
1,211,065	-		HGI48_RS05735	0.47	-3.1
1,211,069	+				-1.0
1,211,069	+		HGI48_RS05735	0.47	+1.4
1,211,070	-				-1.0
1,211,070	-		HGI48_RS05735	0.48	-2.2
1,211,070	-		HGI48_RS05735	0.48	-3.2
1,211,070	-		HGI48_RS05735	0.48	+1.2
1,211,077	+		HGI48_RS05735	0.48	-2.2
1,211,084	+		HGI48_RS05735	0.48	+0.1
1,211,084	+		HGI48_RS05735	0.48	-1.4
1,211,085	-		HGI48_RS05735	0.48	-0.8
1,211,085	-		HGI48_RS05735	0.48	-2.2
1,211,085	-		HGI48_RS05735	0.48	-1.0
1,211,168	-		HGI48_RS05735	0.53	-1.7
1,211,269	+		HGI48_RS05735	0.59	-1.6
1,211,385	-		HGI48_RS05735	0.65	-2.0
1,211,387	+		HGI48_RS05735	0.65	+0.9
1,211,387	+		HGI48_RS05735	0.65	-2.2
1,211,387	+		HGI48_RS05735	0.65	-1.7
1,211,387	+		HGI48_RS05735	0.65	-0.2
1,211,387	+		HGI48_RS05735	0.65	-0.9
1,211,387	+		HGI48_RS05735	0.65	-1.9
1,211,388	-		HGI48_RS05735	0.65	-1.3
1,211,388	-		HGI48_RS05735	0.65	-4.0
1,211,388	-		HGI48_RS05735	0.65	+1.1
1,211,388	-		HGI48_RS05735	0.65	-1.4
1,211,388	-		HGI48_RS05735	0.65	-2.1
1,211,466	+		HGI48_RS05735	0.70	-1.4
1,211,510	+		HGI48_RS05735	0.72	-1.8
1,211,510	+		HGI48_RS05735	0.72	-1.3
1,211,510	+		HGI48_RS05735	0.72	-0.8
1,211,510	+				-1.0
1,211,510	+		HGI48_RS05735	0.72	-2.0
1,211,510	+		HGI48_RS05735	0.72	-2.4
1,211,563	-				-1.0
1,211,592	+		HGI48_RS05735	0.77	-0.4
1,211,617	+		HGI48_RS05735	0.78	-3.1
1,211,828	-		HGI48_RS05735	0.90	+0.1
1,211,921	+				+0.1
1,211,921	+				-1.0
1,211,930	+				-1.0
1,211,930	+				-2.9
1,211,930	+				-1.0
1,211,931	-				+0.6
1,211,931	-				-1.4
1,211,931	-				-1.8
1,211,931	-				-1.0
1,211,931	-				-0.4
1,211,931	-				-2.0
1,211,994	+				+1.1
1,212,040	+				+1.4
1,212,040	+				-0.4
1,212,040	+				+0.6
1,212,041	-				-2.2
1,212,145	+				-1.8
1,212,145	+				+0.6
1,212,145	+				-1.2
1,212,146	-				-1.4
1,212,146	-				+0.2
1,212,153	-				-1.1
1,212,171	-				-1.0
1,212,191	+				-1.0
1,212,247	+				-0.2
1,212,248	-				+0.5
1,212,248	-				-0.8
1,212,253	+				+0.2
1,212,253	+				+0.7
1,212,253	+				-1.4
1,212,253	+				-0.9
1,212,254	-				-0.1
1,212,254	-				+0.6
1,212,254	-				-0.7
1,212,254	-				+0.3
1,212,254	-				+0.6
1,212,284	+				+0.9
1,212,284	+				+0.2
1,212,285	-				+0.6
1,212,288	+				+0.9
1,212,288	+				-0.6
1,212,288	+				-0.5
1,212,288	+				+0.8
1,212,288	+				-1.4
1,212,288	+				+0.0
1,212,288	+				-0.8
1,212,288	+				+0.5
1,212,289	-				+0.9
1,212,289	-				-1.2
1,212,289	-				-0.2
1,212,289	-				+0.0
1,212,289	-				-0.3
1,212,289	-				-1.4
1,212,292	+				+0.3
1,212,292	+				+0.1
1,212,293	-				+0.8
1,212,329	-				-0.4
1,212,351	+		HGI48_RS05740	0.14	+1.7
1,212,351	+		HGI48_RS05740	0.14	+1.8
1,212,351	+		HGI48_RS05740	0.14	+0.6
1,212,351	+		HGI48_RS05740	0.14	-2.0
1,212,351	+		HGI48_RS05740	0.14	-1.2
1,212,352	-		HGI48_RS05740	0.14	+1.2
1,212,352	-		HGI48_RS05740	0.14	-1.8
1,212,441	-				+0.6
1,212,455	+		HGI48_RS05740	0.44	+0.6
1,212,456	-		HGI48_RS05740	0.45	-0.2
1,212,538	+		HGI48_RS05740	0.69	-0.7
1,212,538	+		HGI48_RS05740	0.69	-1.9
1,212,538	+		HGI48_RS05740	0.69	-1.8
1,212,538	+		HGI48_RS05740	0.69	-0.8
1,212,539	-		HGI48_RS05740	0.69	+0.4
1,212,539	-		HGI48_RS05740	0.69	-0.6
1,212,548	+		HGI48_RS05740	0.72	+0.2
1,212,556	+		HGI48_RS05740	0.74	-0.4
1,212,639	+				-1.8
1,212,639	+				+0.2
1,212,639	+				-1.4
1,212,639	+				-0.7
1,212,639	+				-1.6
1,212,640	-				+0.4
1,212,640	-				-0.1
1,212,641	+				-0.4
1,212,641	+				-1.8
1,212,641	+				-2.4
1,212,641	+				+0.3
1,212,648	+				-0.4
1,212,649	-				+0.8
1,212,657	+				-1.4
1,212,657	+				+1.2
1,212,657	+				+0.1
1,212,658	-				+0.3
1,212,663	+				-0.4
1,212,663	+				-0.9
1,212,663	+				+0.6
1,212,666	+				-1.0
1,212,666	+				+0.6
1,212,666	+				-0.4
1,212,666	+				+1.6
1,212,667	-				-2.0
1,212,667	-				-0.9
1,212,667	-				-0.4
1,212,670	+				-1.2
1,212,670	+				-1.6
1,212,708	+				-1.4
1,212,708	+				+1.4
1,212,708	+				-0.0
1,212,709	-				-2.1
1,212,806	-				+0.2
1,212,941	+		HGI48_RS05745	0.20	-0.1
1,212,941	+		HGI48_RS05745	0.20	+0.6
1,212,942	-		HGI48_RS05745	0.20	-0.4
1,212,942	-		HGI48_RS05745	0.20	+0.3
1,212,942	-				-0.4