Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03390 and HGI48_RS03395 are separated by 30 nucleotides HGI48_RS03395 and HGI48_RS03400 are separated by 131 nucleotides HGI48_RS03400 and HGI48_RS03405 are separated by 79 nucleotides HGI48_RS03405 and HGI48_RS03410 are separated by 273 nucleotides
HGI48_RS03390: HGI48_RS03390 - glycine cleavage system aminomethyltransferase GcvT, at 711,990 to 713,090
_RS03390
HGI48_RS03395: HGI48_RS03395 - glycine cleavage system protein GcvH, at 713,121 to 713,528
_RS03395
HGI48_RS03400: HGI48_RS03400 - aminomethyl-transferring glycine dehydrogenase, at 713,660 to 716,533
_RS03400
HGI48_RS03405: HGI48_RS03405 - HD domain-containing protein, at 716,613 to 717,221
_RS03405
HGI48_RS03410: HGI48_RS03410 - hemolysin III family protein, at 717,495 to 718,145
_RS03410
Position (kb) 713
714
715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 712.696 kb on - strand, within HGI48_RS03390 at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.151 kb on - strand at 713.151 kb on - strand at 713.193 kb on + strand, within HGI48_RS03395 at 713.247 kb on - strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.526 kb on + strand at 713.527 kb on - strand at 713.527 kb on - strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.567 kb on - strand at 713.638 kb on + strand at 713.639 kb on - strand at 713.639 kb on - strand at 713.909 kb on + strand at 713.909 kb on + strand at 713.909 kb on + strand at 713.910 kb on - strand at 713.910 kb on - strand at 713.984 kb on + strand, within HGI48_RS03400 at 713.984 kb on + strand at 713.985 kb on - strand, within HGI48_RS03400 at 713.985 kb on - strand, within HGI48_RS03400 at 713.987 kb on - strand, within HGI48_RS03400 at 713.993 kb on + strand at 713.995 kb on + strand, within HGI48_RS03400 at 713.996 kb on - strand, within HGI48_RS03400 at 714.280 kb on + strand, within HGI48_RS03400 at 714.281 kb on - strand, within HGI48_RS03400 at 714.281 kb on - strand, within HGI48_RS03400 at 714.284 kb on + strand at 714.285 kb on - strand, within HGI48_RS03400 at 714.285 kb on - strand, within HGI48_RS03400 at 714.285 kb on - strand, within HGI48_RS03400 at 714.285 kb on - strand, within HGI48_RS03400 at 714.536 kb on + strand at 714.537 kb on - strand, within HGI48_RS03400 at 714.658 kb on + strand, within HGI48_RS03400 at 714.658 kb on + strand, within HGI48_RS03400 at 714.659 kb on - strand, within HGI48_RS03400 at 714.664 kb on + strand, within HGI48_RS03400 at 714.664 kb on + strand, within HGI48_RS03400 at 714.665 kb on - strand, within HGI48_RS03400 at 714.665 kb on - strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.702 kb on - strand, within HGI48_RS03400 at 714.702 kb on - strand, within HGI48_RS03400 at 714.710 kb on + strand, within HGI48_RS03400 at 714.710 kb on + strand, within HGI48_RS03400 at 714.711 kb on - strand, within HGI48_RS03400 at 714.711 kb on - strand at 714.826 kb on + strand, within HGI48_RS03400 at 714.975 kb on + strand, within HGI48_RS03400 at 715.103 kb on + strand, within HGI48_RS03400 at 715.103 kb on + strand, within HGI48_RS03400 at 715.344 kb on - strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.358 kb on - strand, within HGI48_RS03400 at 715.358 kb on - strand, within HGI48_RS03400 at 715.358 kb on - strand, within HGI48_RS03400 at 715.544 kb on - strand, within HGI48_RS03400 at 715.616 kb on + strand, within HGI48_RS03400 at 715.617 kb on - strand, within HGI48_RS03400 at 715.637 kb on + strand, within HGI48_RS03400 at 715.668 kb on + strand, within HGI48_RS03400 at 715.669 kb on - strand, within HGI48_RS03400 at 715.669 kb on - strand, within HGI48_RS03400 at 715.669 kb on - strand, within HGI48_RS03400 at 715.679 kb on + strand, within HGI48_RS03400 at 715.679 kb on + strand, within HGI48_RS03400 at 715.680 kb on - strand, within HGI48_RS03400 at 715.694 kb on + strand, within HGI48_RS03400 at 715.694 kb on + strand, within HGI48_RS03400 at 715.695 kb on - strand, within HGI48_RS03400 at 715.695 kb on - strand, within HGI48_RS03400 at 715.732 kb on + strand, within HGI48_RS03400 at 715.732 kb on + strand, within HGI48_RS03400 at 715.732 kb on + strand, within HGI48_RS03400 at 715.733 kb on - strand, within HGI48_RS03400 at 715.745 kb on + strand, within HGI48_RS03400 at 715.745 kb on + strand, within HGI48_RS03400 at 715.942 kb on + strand, within HGI48_RS03400 at 715.942 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand at 715.965 kb on - strand, within HGI48_RS03400 at 715.965 kb on - strand, within HGI48_RS03400 at 715.965 kb on - strand, within HGI48_RS03400 at 716.030 kb on + strand, within HGI48_RS03400 at 716.030 kb on + strand, within HGI48_RS03400 at 716.030 kb on + strand, within HGI48_RS03400 at 716.031 kb on - strand, within HGI48_RS03400 at 716.031 kb on - strand, within HGI48_RS03400 at 716.031 kb on - strand, within HGI48_RS03400 at 716.058 kb on - strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.177 kb on + strand, within HGI48_RS03400 at 716.304 kb on + strand at 716.304 kb on + strand at 716.304 kb on + strand at 716.304 kb on + strand at 716.305 kb on - strand at 716.305 kb on - strand at 716.352 kb on + strand at 716.447 kb on + strand at 716.448 kb on - strand at 716.448 kb on - strand at 716.491 kb on + strand at 716.492 kb on - strand at 716.532 kb on - strand at 716.545 kb on - strand at 716.594 kb on + strand at 716.595 kb on - strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.836 kb on + strand, within HGI48_RS03405 at 716.837 kb on - strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.958 kb on + strand, within HGI48_RS03405 at 716.959 kb on - strand, within HGI48_RS03405 at 716.959 kb on - strand at 717.040 kb on + strand, within HGI48_RS03405 at 717.240 kb on - strand at 717.240 kb on - strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.256 kb on - strand at 717.270 kb on - strand at 717.288 kb on + strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.330 kb on + strand at 717.330 kb on + strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.444 kb on + strand at 717.445 kb on - strand at 717.467 kb on + strand at 717.467 kb on + strand at 717.468 kb on - strand at 717.468 kb on - strand at 717.524 kb on + strand at 717.524 kb on + strand at 717.524 kb on + strand at 717.525 kb on - strand at 717.525 kb on - strand at 717.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 712,696 - HGI48_RS03390 0.64 +0.5 713,148 + +0.4 713,148 + -1.4 713,148 + +0.1 713,148 + +0.0 713,148 + -0.7 713,148 + -0.4 713,149 - +0.0 713,149 - +1.0 713,149 - +0.0 713,149 - -1.7 713,150 + -1.7 713,150 + +1.9 713,150 + -0.5 713,150 + +2.6 713,150 + -1.0 713,151 - -0.4 713,151 - +1.2 713,193 + HGI48_RS03395 0.18 -2.7 713,247 - HGI48_RS03395 0.31 -0.4 713,331 + HGI48_RS03395 0.51 -0.1 713,331 + HGI48_RS03395 0.51 +0.6 713,331 + HGI48_RS03395 0.51 +0.4 713,331 + HGI48_RS03395 0.51 +1.3 713,332 - HGI48_RS03395 0.52 -0.5 713,332 - HGI48_RS03395 0.52 -1.4 713,332 - HGI48_RS03395 0.52 -0.4 713,332 - HGI48_RS03395 0.52 +0.1 713,526 + -0.4 713,527 - +0.8 713,527 - -1.5 713,566 + -1.1 713,566 + -0.4 713,566 + +0.6 713,566 + -0.1 713,566 + +0.4 713,567 - -0.1 713,638 + -0.6 713,639 - +0.1 713,639 - +2.0 713,909 + +1.0 713,909 + -0.2 713,909 + -1.2 713,910 - -0.3 713,910 - +0.6 713,984 + HGI48_RS03400 0.11 +1.3 713,984 + -1.0 713,985 - HGI48_RS03400 0.11 +1.6 713,985 - HGI48_RS03400 0.11 +0.6 713,987 - HGI48_RS03400 0.11 -1.7 713,993 + +1.4 713,995 + HGI48_RS03400 0.12 -0.1 713,996 - HGI48_RS03400 0.12 -2.2 714,280 + HGI48_RS03400 0.22 -2.2 714,281 - HGI48_RS03400 0.22 +0.6 714,281 - HGI48_RS03400 0.22 +0.4 714,284 + +0.6 714,285 - HGI48_RS03400 0.22 -1.4 714,285 - HGI48_RS03400 0.22 -1.0 714,285 - HGI48_RS03400 0.22 -0.3 714,285 - HGI48_RS03400 0.22 -0.4 714,536 + +1.0 714,537 - HGI48_RS03400 0.31 -2.1 714,658 + HGI48_RS03400 0.35 +0.7 714,658 + HGI48_RS03400 0.35 -2.4 714,659 - HGI48_RS03400 0.35 -0.7 714,664 + HGI48_RS03400 0.35 -0.1 714,664 + HGI48_RS03400 0.35 +0.4 714,665 - HGI48_RS03400 0.35 +1.1 714,665 - HGI48_RS03400 0.35 -1.7 714,701 + HGI48_RS03400 0.36 -0.5 714,701 + HGI48_RS03400 0.36 -0.2 714,701 + HGI48_RS03400 0.36 +0.3 714,701 + HGI48_RS03400 0.36 -2.2 714,701 + HGI48_RS03400 0.36 -0.3 714,701 + HGI48_RS03400 0.36 -3.2 714,702 - HGI48_RS03400 0.36 +0.5 714,702 - HGI48_RS03400 0.36 -1.4 714,710 + HGI48_RS03400 0.37 -2.0 714,710 + HGI48_RS03400 0.37 -0.2 714,711 - HGI48_RS03400 0.37 -0.4 714,711 - +1.0 714,826 + HGI48_RS03400 0.41 -0.7 714,975 + HGI48_RS03400 0.46 -0.1 715,103 + HGI48_RS03400 0.50 -1.7 715,103 + HGI48_RS03400 0.50 +0.1 715,344 - HGI48_RS03400 0.59 +0.9 715,357 + HGI48_RS03400 0.59 -0.9 715,357 + HGI48_RS03400 0.59 -0.4 715,357 + HGI48_RS03400 0.59 +1.0 715,357 + HGI48_RS03400 0.59 -0.7 715,358 - HGI48_RS03400 0.59 -1.2 715,358 - HGI48_RS03400 0.59 -0.1 715,358 - HGI48_RS03400 0.59 +0.4 715,544 - HGI48_RS03400 0.66 -0.0 715,616 + HGI48_RS03400 0.68 -0.0 715,617 - HGI48_RS03400 0.68 +0.0 715,637 + HGI48_RS03400 0.69 -0.2 715,668 + HGI48_RS03400 0.70 -1.2 715,669 - HGI48_RS03400 0.70 +0.3 715,669 - HGI48_RS03400 0.70 -0.0 715,669 - HGI48_RS03400 0.70 -0.6 715,679 + HGI48_RS03400 0.70 -0.4 715,679 + HGI48_RS03400 0.70 -2.4 715,680 - HGI48_RS03400 0.70 -0.7 715,694 + HGI48_RS03400 0.71 -1.0 715,694 + HGI48_RS03400 0.71 -0.7 715,695 - HGI48_RS03400 0.71 -0.6 715,695 - HGI48_RS03400 0.71 -0.1 715,732 + HGI48_RS03400 0.72 -0.5 715,732 + HGI48_RS03400 0.72 -0.7 715,732 + HGI48_RS03400 0.72 -0.1 715,733 - HGI48_RS03400 0.72 -0.2 715,745 + HGI48_RS03400 0.73 -0.4 715,745 + HGI48_RS03400 0.73 -1.0 715,942 + HGI48_RS03400 0.79 -0.4 715,942 + HGI48_RS03400 0.79 -2.0 715,964 + HGI48_RS03400 0.80 +0.4 715,964 + HGI48_RS03400 0.80 -1.7 715,964 + HGI48_RS03400 0.80 -1.0 715,964 + HGI48_RS03400 0.80 -1.7 715,964 + +0.0 715,965 - HGI48_RS03400 0.80 +0.8 715,965 - HGI48_RS03400 0.80 +0.2 715,965 - HGI48_RS03400 0.80 -0.6 716,030 + HGI48_RS03400 0.82 +0.3 716,030 + HGI48_RS03400 0.82 -0.6 716,030 + HGI48_RS03400 0.82 +0.6 716,031 - HGI48_RS03400 0.82 -0.8 716,031 - HGI48_RS03400 0.82 +0.6 716,031 - HGI48_RS03400 0.82 +1.3 716,058 - HGI48_RS03400 0.83 +0.1 716,069 + HGI48_RS03400 0.84 +0.8 716,069 + HGI48_RS03400 0.84 -1.3 716,069 + HGI48_RS03400 0.84 -1.5 716,069 + HGI48_RS03400 0.84 +1.5 716,069 + HGI48_RS03400 0.84 -2.0 716,070 - HGI48_RS03400 0.84 +1.1 716,070 - HGI48_RS03400 0.84 +0.1 716,070 - HGI48_RS03400 0.84 -0.4 716,070 - HGI48_RS03400 0.84 +1.7 716,177 + HGI48_RS03400 0.88 +0.0 716,304 + -3.3 716,304 + -1.4 716,304 + -1.8 716,304 + +0.1 716,305 - +0.3 716,305 - +0.3 716,352 + -0.1 716,447 + +1.2 716,448 - -0.5 716,448 - -1.0 716,491 + -0.0 716,492 - +1.2 716,532 - -0.6 716,545 - -1.0 716,594 + -2.8 716,595 - +0.0 716,614 + +0.0 716,614 + +0.1 716,614 + -1.4 716,614 + +2.4 716,615 - -0.4 716,615 - +2.0 716,615 - +0.0 716,615 - +0.7 716,615 - -0.4 716,615 - -0.8 716,836 + HGI48_RS03405 0.37 +1.6 716,837 - HGI48_RS03405 0.37 -0.2 716,950 + HGI48_RS03405 0.55 +0.3 716,950 + HGI48_RS03405 0.55 -1.1 716,950 + HGI48_RS03405 0.55 +0.0 716,951 - HGI48_RS03405 0.56 -0.8 716,951 - HGI48_RS03405 0.56 +0.4 716,951 - HGI48_RS03405 0.56 +0.1 716,958 + HGI48_RS03405 0.57 -1.7 716,959 - HGI48_RS03405 0.57 -0.4 716,959 - -1.0 717,040 + HGI48_RS03405 0.70 +0.6 717,240 - -1.1 717,240 - +0.9 717,250 + +1.0 717,250 + +0.4 717,250 + -0.4 717,250 + +0.2 717,251 - -0.1 717,251 - +0.8 717,251 - -0.7 717,251 - -0.3 717,256 - +0.5 717,270 - +0.6 717,288 + +0.6 717,289 - -1.7 717,289 - -1.7 717,289 - -1.1 717,289 - -2.4 717,330 + -0.9 717,330 + +0.4 717,434 - +0.9 717,434 - +2.0 717,434 - +0.1 717,434 - -0.6 717,434 - -0.6 717,434 - +0.6 717,444 + -0.6 717,445 - -1.0 717,467 + +1.0 717,467 + -1.5 717,468 - +0.4 717,468 - -0.4 717,524 + -2.5 717,524 + +0.6 717,524 + -0.1 717,525 - +0.1 717,525 - -0.8 717,525 - -2.0
Or see this region's nucleotide sequence