Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02435 and HGI48_RS02440 are separated by 31 nucleotides HGI48_RS02440 and HGI48_RS02445 are separated by 261 nucleotides HGI48_RS02445 and HGI48_RS02450 are separated by 16 nucleotides HGI48_RS02450 and HGI48_RS02455 overlap by 4 nucleotides
HGI48_RS02435: HGI48_RS02435 - amidohydrolase, at 528,068 to 529,237
_RS02435
HGI48_RS02440: HGI48_RS02440 - hypothetical protein, at 529,269 to 529,511
_RS02440
HGI48_RS02445: HGI48_RS02445 - ATP-binding cassette domain-containing protein, at 529,773 to 530,309
_RS02445
HGI48_RS02450: HGI48_RS02450 - ABC transporter substrate-binding protein, at 530,326 to 531,267
_RS02450
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 528.811 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand at 528.882 kb on - strand, within HGI48_RS02435 at 528.882 kb on - strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.913 kb on - strand at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand at 529.065 kb on - strand, within HGI48_RS02435 at 529.065 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.148 kb on + strand at 529.157 kb on - strand at 529.238 kb on + strand at 529.239 kb on - strand at 529.239 kb on - strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.270 kb on + strand at 529.271 kb on - strand at 529.281 kb on - strand at 529.281 kb on - strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.537 kb on + strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.550 kb on - strand at 529.550 kb on - strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.710 kb on + strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.714 kb on + strand at 529.715 kb on - strand at 529.804 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.831 kb on + strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.840 kb on + strand at 529.841 kb on - strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.858 kb on + strand at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.876 kb on + strand, within HGI48_RS02445 at 529.991 kb on + strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 530.051 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.189 kb on + strand, within HGI48_RS02445 at 530.260 kb on + strand at 530.274 kb on + strand at 530.274 kb on + strand at 530.282 kb on + strand at 530.282 kb on + strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.387 kb on + strand at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand at 530.645 kb on - strand at 530.693 kb on - strand, within HGI48_RS02450 at 530.693 kb on - strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.728 kb on - strand at 530.728 kb on - strand, within HGI48_RS02450 at 530.768 kb on + strand, within HGI48_RS02450 at 530.768 kb on + strand at 530.768 kb on + strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.908 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.947 kb on + strand, within HGI48_RS02450 at 530.948 kb on - strand, within HGI48_RS02450 at 531.079 kb on + strand, within HGI48_RS02450 at 531.080 kb on - strand, within HGI48_RS02450 at 531.184 kb on + strand at 531.282 kb on + strand at 531.282 kb on + strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.304 kb on + strand at 531.305 kb on - strand at 531.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 528,811 + HGI48_RS02435 0.64 -1.2 528,881 + HGI48_RS02435 0.69 +0.6 528,881 + HGI48_RS02435 0.69 -0.5 528,881 + -0.9 528,882 - HGI48_RS02435 0.70 +0.6 528,882 - HGI48_RS02435 0.70 -1.9 528,912 + HGI48_RS02435 0.72 -1.9 528,912 + HGI48_RS02435 0.72 -2.7 528,912 + HGI48_RS02435 0.72 +0.4 528,912 + HGI48_RS02435 0.72 +0.4 528,913 - +2.1 529,064 + HGI48_RS02435 0.85 -1.7 529,064 + HGI48_RS02435 0.85 -0.4 529,064 + HGI48_RS02435 0.85 -0.1 529,064 + +0.6 529,065 - HGI48_RS02435 0.85 +0.3 529,065 - HGI48_RS02435 0.85 -0.1 529,072 - HGI48_RS02435 0.86 +0.2 529,072 - HGI48_RS02435 0.86 -1.4 529,091 + HGI48_RS02435 0.87 -0.4 529,091 + HGI48_RS02435 0.87 -0.4 529,092 - HGI48_RS02435 0.88 +0.8 529,092 - HGI48_RS02435 0.88 +0.1 529,092 - HGI48_RS02435 0.88 -0.4 529,148 + -0.7 529,157 - +0.1 529,238 + -0.2 529,239 - +1.5 529,239 - -0.2 529,266 + -1.5 529,266 + -0.1 529,266 + +0.2 529,266 + -1.2 529,266 + -1.9 529,266 + -2.5 529,266 + -2.1 529,266 + +0.1 529,266 + +0.8 529,266 + +1.0 529,266 + +2.2 529,267 - -1.4 529,267 - +0.4 529,267 - -0.2 529,267 - +0.2 529,267 - +1.3 529,267 - -2.7 529,270 + +0.1 529,271 - -0.4 529,281 - +1.2 529,281 - +0.7 529,525 + +0.9 529,525 + +1.9 529,525 + -1.2 529,526 - -1.4 529,526 - +1.2 529,526 - -0.7 529,537 + -1.4 529,538 - +1.5 529,538 - +0.5 529,538 - -0.7 529,550 - -1.2 529,550 - +0.4 529,638 + -0.2 529,638 + +0.4 529,638 + +0.1 529,639 - +0.1 529,639 - +1.0 529,639 - +1.6 529,639 - -2.8 529,710 + +0.2 529,711 - +0.2 529,711 - -0.1 529,711 - +0.3 529,711 - -0.4 529,711 - +0.6 529,714 + +0.6 529,715 - -0.4 529,804 + +0.6 529,813 + +0.6 529,813 + -2.2 529,813 + -0.6 529,813 + -0.7 529,814 - +0.8 529,814 - -2.2 529,814 - -1.7 529,831 + HGI48_RS02445 0.11 -1.7 529,832 - HGI48_RS02445 0.11 +0.4 529,832 - HGI48_RS02445 0.11 -2.4 529,832 - HGI48_RS02445 0.11 -1.4 529,832 - HGI48_RS02445 0.11 -0.1 529,832 - HGI48_RS02445 0.11 +0.7 529,832 - HGI48_RS02445 0.11 -2.8 529,832 - HGI48_RS02445 0.11 -0.0 529,832 - HGI48_RS02445 0.11 -1.2 529,832 - HGI48_RS02445 0.11 +0.9 529,840 + +0.1 529,841 - HGI48_RS02445 0.13 -0.9 529,849 + +0.1 529,849 + +0.6 529,849 + HGI48_RS02445 0.14 -0.4 529,849 + HGI48_RS02445 0.14 +0.2 529,849 + HGI48_RS02445 0.14 -0.8 529,849 + +1.2 529,849 + HGI48_RS02445 0.14 -2.3 529,850 - HGI48_RS02445 0.14 -1.2 529,850 - HGI48_RS02445 0.14 -0.1 529,850 - HGI48_RS02445 0.14 +0.8 529,850 - HGI48_RS02445 0.14 -2.7 529,858 + +0.6 529,867 + HGI48_RS02445 0.18 -0.1 529,867 + HGI48_RS02445 0.18 +0.5 529,867 + HGI48_RS02445 0.18 +0.1 529,868 - HGI48_RS02445 0.18 +0.8 529,868 - HGI48_RS02445 0.18 +0.6 529,876 + HGI48_RS02445 0.19 +0.6 529,991 + HGI48_RS02445 0.41 -2.5 529,992 - HGI48_RS02445 0.41 +1.1 529,992 - HGI48_RS02445 0.41 -0.1 530,051 - HGI48_RS02445 0.52 -0.7 530,054 - +3.2 530,054 - HGI48_RS02445 0.52 -2.2 530,054 - HGI48_RS02445 0.52 -1.1 530,054 - HGI48_RS02445 0.52 -0.3 530,054 - HGI48_RS02445 0.52 -1.3 530,054 - HGI48_RS02445 0.52 -0.7 530,189 + HGI48_RS02445 0.77 -0.1 530,260 + +0.4 530,274 + -0.3 530,274 + -1.7 530,282 + +0.1 530,282 + +0.2 530,283 - +0.3 530,283 - +0.2 530,283 - -1.4 530,387 + -0.9 530,585 - HGI48_RS02450 0.27 +0.3 530,585 - HGI48_RS02450 0.27 -0.0 530,585 - +0.1 530,645 - +0.1 530,693 - HGI48_RS02450 0.39 -1.7 530,693 - HGI48_RS02450 0.39 -1.1 530,727 + HGI48_RS02450 0.43 -0.1 530,727 + HGI48_RS02450 0.43 +0.1 530,727 + HGI48_RS02450 0.43 -0.9 530,728 - -0.9 530,728 - HGI48_RS02450 0.43 +0.3 530,768 + HGI48_RS02450 0.47 +0.5 530,768 + +2.0 530,768 + HGI48_RS02450 0.47 -0.4 530,769 - HGI48_RS02450 0.47 +0.1 530,769 - HGI48_RS02450 0.47 -0.6 530,769 - HGI48_RS02450 0.47 +1.6 530,769 - HGI48_RS02450 0.47 -1.7 530,901 - HGI48_RS02450 0.61 -0.4 530,901 - HGI48_RS02450 0.61 -0.8 530,901 - HGI48_RS02450 0.61 +1.0 530,908 + HGI48_RS02450 0.62 -0.7 530,925 + HGI48_RS02450 0.64 -1.7 530,925 + HGI48_RS02450 0.64 +0.6 530,947 + HGI48_RS02450 0.66 +0.2 530,948 - HGI48_RS02450 0.66 -0.3 531,079 + HGI48_RS02450 0.80 +1.2 531,080 - HGI48_RS02450 0.80 -0.7 531,184 + +1.1 531,282 + -0.4 531,282 + -1.2 531,283 - -3.1 531,283 - -2.2 531,283 - +1.4 531,283 - -0.4 531,304 + +0.3 531,305 - -1.2 531,305 - -0.7
Or see this region's nucleotide sequence