Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01840 and HGI48_RS01845 are separated by 27 nucleotides HGI48_RS01845 and HGI48_RS01850 overlap by 8 nucleotides
HGI48_RS01840: HGI48_RS01840 - ABC transporter permease, at 409,238 to 410,260
_RS01840
HGI48_RS01845: HGI48_RS01845 - ABC transporter permease, at 410,288 to 411,109
_RS01845
HGI48_RS01850: HGI48_RS01850 - ABC transporter ATP-binding protein, at 411,102 to 412,697
_RS01850
Position (kb) 410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 409.822 kb on + strand, within HGI48_RS01840 at 409.823 kb on - strand, within HGI48_RS01840 at 409.823 kb on - strand, within HGI48_RS01840 at 409.823 kb on - strand, within HGI48_RS01840 at 409.943 kb on + strand, within HGI48_RS01840 at 409.943 kb on + strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand, within HGI48_RS01840 at 409.944 kb on - strand at 410.036 kb on - strand, within HGI48_RS01840 at 410.054 kb on + strand, within HGI48_RS01840 at 410.054 kb on + strand, within HGI48_RS01840 at 410.055 kb on - strand, within HGI48_RS01840 at 410.055 kb on - strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.115 kb on - strand, within HGI48_RS01840 at 410.115 kb on - strand at 410.143 kb on + strand at 410.144 kb on - strand, within HGI48_RS01840 at 410.144 kb on - strand, within HGI48_RS01840 at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.197 kb on + strand at 410.198 kb on - strand at 410.279 kb on + strand at 410.279 kb on + strand at 410.280 kb on - strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.341 kb on + strand at 410.675 kb on - strand, within HGI48_RS01845 at 410.675 kb on - strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.725 kb on - strand, within HGI48_RS01845 at 410.725 kb on - strand, within HGI48_RS01845 at 410.725 kb on - strand at 410.725 kb on - strand, within HGI48_RS01845 at 411.067 kb on - strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.113 kb on - strand at 411.113 kb on - strand at 411.113 kb on - strand at 411.196 kb on + strand at 411.196 kb on + strand at 411.196 kb on + strand at 411.197 kb on - strand at 411.197 kb on - strand at 411.197 kb on - strand at 411.273 kb on - strand, within HGI48_RS01850 at 411.293 kb on + strand, within HGI48_RS01850 at 411.293 kb on + strand at 411.293 kb on + strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.305 kb on + strand, within HGI48_RS01850 at 411.353 kb on - strand, within HGI48_RS01850 at 411.353 kb on - strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.382 kb on - strand, within HGI48_RS01850 at 411.702 kb on - strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.849 kb on + strand, within HGI48_RS01850 at 411.850 kb on - strand, within HGI48_RS01850 at 411.866 kb on - strand, within HGI48_RS01850
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 409,822 + HGI48_RS01840 0.57 -2.3 409,823 - HGI48_RS01840 0.57 +0.1 409,823 - HGI48_RS01840 0.57 +1.5 409,823 - HGI48_RS01840 0.57 +1.7 409,943 + HGI48_RS01840 0.69 +0.0 409,943 + HGI48_RS01840 0.69 +0.8 409,944 - HGI48_RS01840 0.69 -0.8 409,944 - HGI48_RS01840 0.69 -1.5 409,944 - HGI48_RS01840 0.69 +0.7 409,944 - HGI48_RS01840 0.69 -1.0 409,944 - HGI48_RS01840 0.69 -0.8 409,944 - HGI48_RS01840 0.69 +0.2 409,944 - +2.7 410,036 - HGI48_RS01840 0.78 +0.2 410,054 + HGI48_RS01840 0.80 +0.4 410,054 + HGI48_RS01840 0.80 +1.7 410,055 - HGI48_RS01840 0.80 -2.3 410,055 - HGI48_RS01840 0.80 -0.5 410,114 + HGI48_RS01840 0.86 +0.1 410,114 + HGI48_RS01840 0.86 -0.5 410,114 + HGI48_RS01840 0.86 +1.0 410,114 + HGI48_RS01840 0.86 +0.4 410,114 + HGI48_RS01840 0.86 +1.0 410,114 + HGI48_RS01840 0.86 -1.0 410,114 + HGI48_RS01840 0.86 -0.9 410,114 + HGI48_RS01840 0.86 -0.0 410,114 + HGI48_RS01840 0.86 +0.1 410,115 - HGI48_RS01840 0.86 -1.7 410,115 - -0.3 410,143 + -0.3 410,144 - HGI48_RS01840 0.89 -1.7 410,144 - HGI48_RS01840 0.89 -1.9 410,186 + -0.6 410,186 + -1.7 410,186 + -0.3 410,186 + -0.1 410,187 - +1.7 410,187 - +0.7 410,187 - +0.3 410,187 - -0.4 410,197 + -1.3 410,198 - +1.1 410,279 + -1.6 410,279 + -2.5 410,280 - -0.1 410,285 + +0.1 410,285 + -0.1 410,285 + +0.1 410,285 + +1.7 410,285 + -0.5 410,285 + -0.9 410,285 + +1.1 410,285 + -1.7 410,286 - -0.9 410,286 - -0.7 410,286 - -1.1 410,286 - +0.2 410,286 - +0.4 410,286 - +0.2 410,286 - -1.2 410,286 - -0.5 410,286 - -1.9 410,286 - -1.3 410,286 - -2.5 410,286 - +0.4 410,286 - -0.9 410,341 + -1.1 410,675 - HGI48_RS01845 0.47 -0.1 410,675 - HGI48_RS01845 0.47 -1.5 410,724 + HGI48_RS01845 0.53 +0.1 410,724 + HGI48_RS01845 0.53 -0.0 410,724 + HGI48_RS01845 0.53 -0.5 410,724 + HGI48_RS01845 0.53 -0.3 410,724 + HGI48_RS01845 0.53 -1.3 410,725 - HGI48_RS01845 0.53 -1.7 410,725 - HGI48_RS01845 0.53 -2.1 410,725 - +2.2 410,725 - HGI48_RS01845 0.53 -0.0 411,067 - +0.1 411,112 + +2.1 411,112 + +0.1 411,112 + -0.8 411,113 - -0.3 411,113 - -1.0 411,113 - +0.1 411,196 + +0.2 411,196 + +1.0 411,196 + +0.9 411,197 - -2.3 411,197 - +0.3 411,197 - +0.3 411,273 - HGI48_RS01850 0.11 +0.7 411,293 + HGI48_RS01850 0.12 -2.3 411,293 + -0.9 411,293 + HGI48_RS01850 0.12 -1.9 411,294 - HGI48_RS01850 0.12 +1.8 411,294 - HGI48_RS01850 0.12 -2.3 411,294 - HGI48_RS01850 0.12 +0.0 411,305 + HGI48_RS01850 0.13 -1.3 411,353 - HGI48_RS01850 0.16 +1.2 411,353 - HGI48_RS01850 0.16 -1.3 411,381 + HGI48_RS01850 0.17 +0.5 411,381 + HGI48_RS01850 0.17 +0.2 411,381 + HGI48_RS01850 0.17 -0.8 411,382 - HGI48_RS01850 0.18 -0.0 411,702 - HGI48_RS01850 0.38 +0.2 411,729 + HGI48_RS01850 0.39 -0.7 411,729 + HGI48_RS01850 0.39 +3.1 411,729 + HGI48_RS01850 0.39 +0.7 411,729 + HGI48_RS01850 0.39 -1.3 411,729 + HGI48_RS01850 0.39 -0.1 411,730 - HGI48_RS01850 0.39 -1.7 411,730 - HGI48_RS01850 0.39 -0.2 411,730 - HGI48_RS01850 0.39 -1.6 411,776 + HGI48_RS01850 0.42 -1.0 411,776 + HGI48_RS01850 0.42 -0.3 411,776 + HGI48_RS01850 0.42 +1.6 411,849 + HGI48_RS01850 0.47 +1.0 411,850 - HGI48_RS01850 0.47 -0.1 411,866 - HGI48_RS01850 0.48 -0.6
Or see this region's nucleotide sequence