Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00915 and HGI48_RS00920 are separated by 3 nucleotides HGI48_RS00920 and HGI48_RS00925 are separated by 113 nucleotides HGI48_RS00925 and HGI48_RS00930 are separated by 2 nucleotides
HGI48_RS00915: HGI48_RS00915 - Sec-independent protein translocase subunit TatB, at 209,454 to 210,026
_RS00915
HGI48_RS00920: HGI48_RS00920 - Sec-independent protein translocase subunit TatC, at 210,030 to 210,797
_RS00920
HGI48_RS00925: HGI48_RS00925 - 3'-5' ssDNA/RNA exonuclease TatD, at 210,911 to 211,705
_RS00925
HGI48_RS00930: HGI48_RS00930 - porphobilinogen synthase, at 211,708 to 212,730
_RS00930
Position (kb) 210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 209.992 kb on + strand at 209.993 kb on - strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.029 kb on + strand at 210.030 kb on - strand at 210.030 kb on - strand at 210.081 kb on - strand at 210.095 kb on + strand at 210.095 kb on + strand at 210.096 kb on - strand at 210.102 kb on - strand at 210.109 kb on + strand, within HGI48_RS00920 at 210.109 kb on + strand, within HGI48_RS00920 at 210.135 kb on + strand, within HGI48_RS00920 at 210.153 kb on + strand, within HGI48_RS00920 at 210.153 kb on + strand, within HGI48_RS00920 at 210.153 kb on + strand, within HGI48_RS00920 at 210.154 kb on - strand, within HGI48_RS00920 at 210.154 kb on - strand, within HGI48_RS00920 at 210.154 kb on - strand, within HGI48_RS00920 at 210.203 kb on + strand, within HGI48_RS00920 at 210.204 kb on - strand, within HGI48_RS00920 at 210.294 kb on + strand, within HGI48_RS00920 at 210.294 kb on + strand, within HGI48_RS00920 at 210.295 kb on - strand, within HGI48_RS00920 at 210.327 kb on + strand, within HGI48_RS00920 at 210.327 kb on + strand, within HGI48_RS00920 at 210.328 kb on - strand, within HGI48_RS00920 at 210.384 kb on + strand, within HGI48_RS00920 at 210.384 kb on + strand, within HGI48_RS00920 at 210.384 kb on + strand at 210.385 kb on - strand, within HGI48_RS00920 at 210.385 kb on - strand, within HGI48_RS00920 at 210.385 kb on - strand at 210.387 kb on - strand, within HGI48_RS00920 at 210.405 kb on + strand, within HGI48_RS00920 at 210.432 kb on - strand, within HGI48_RS00920 at 210.485 kb on + strand at 210.485 kb on + strand, within HGI48_RS00920 at 210.486 kb on - strand, within HGI48_RS00920 at 210.486 kb on - strand, within HGI48_RS00920 at 210.486 kb on - strand, within HGI48_RS00920 at 210.489 kb on + strand, within HGI48_RS00920 at 210.489 kb on + strand, within HGI48_RS00920 at 210.490 kb on - strand, within HGI48_RS00920 at 210.490 kb on - strand, within HGI48_RS00920 at 210.490 kb on - strand, within HGI48_RS00920 at 210.490 kb on - strand, within HGI48_RS00920 at 210.612 kb on + strand, within HGI48_RS00920 at 210.612 kb on + strand, within HGI48_RS00920 at 210.612 kb on + strand, within HGI48_RS00920 at 210.696 kb on + strand, within HGI48_RS00920 at 210.696 kb on + strand, within HGI48_RS00920 at 210.697 kb on - strand, within HGI48_RS00920 at 210.697 kb on - strand, within HGI48_RS00920 at 210.700 kb on + strand, within HGI48_RS00920 at 210.700 kb on + strand, within HGI48_RS00920 at 210.700 kb on + strand, within HGI48_RS00920 at 210.700 kb on + strand, within HGI48_RS00920 at 210.701 kb on - strand, within HGI48_RS00920 at 210.701 kb on - strand, within HGI48_RS00920 at 210.735 kb on + strand at 210.736 kb on - strand at 210.829 kb on + strand at 210.869 kb on + strand at 210.969 kb on + strand at 210.970 kb on - strand at 210.970 kb on - strand at 211.074 kb on - strand at 211.310 kb on - strand, within HGI48_RS00925 at 211.318 kb on + strand, within HGI48_RS00925 at 211.319 kb on - strand at 211.319 kb on - strand, within HGI48_RS00925 at 211.346 kb on - strand, within HGI48_RS00925 at 211.489 kb on + strand, within HGI48_RS00925 at 211.548 kb on + strand, within HGI48_RS00925 at 211.548 kb on + strand, within HGI48_RS00925 at 211.548 kb on + strand, within HGI48_RS00925 at 211.549 kb on - strand, within HGI48_RS00925 at 211.549 kb on - strand, within HGI48_RS00925 at 211.549 kb on - strand, within HGI48_RS00925 at 211.549 kb on - strand, within HGI48_RS00925 at 211.549 kb on - strand, within HGI48_RS00925 at 211.555 kb on + strand, within HGI48_RS00925 at 211.555 kb on + strand, within HGI48_RS00925 at 211.555 kb on + strand, within HGI48_RS00925 at 211.556 kb on - strand, within HGI48_RS00925 at 211.597 kb on + strand, within HGI48_RS00925 at 211.598 kb on - strand, within HGI48_RS00925 at 211.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 209,992 + -0.4 209,993 - +2.1 210,029 + -0.1 210,029 + +0.0 210,029 + +1.7 210,029 + +1.4 210,029 + +0.2 210,029 + +0.4 210,030 - +0.7 210,030 - -0.5 210,081 - +0.2 210,095 + +0.3 210,095 + -0.3 210,096 - -0.8 210,102 - -2.7 210,109 + HGI48_RS00920 0.10 -0.5 210,109 + HGI48_RS00920 0.10 -0.6 210,135 + HGI48_RS00920 0.14 +1.5 210,153 + HGI48_RS00920 0.16 +0.9 210,153 + HGI48_RS00920 0.16 +0.5 210,153 + HGI48_RS00920 0.16 +1.0 210,154 - HGI48_RS00920 0.16 +1.0 210,154 - HGI48_RS00920 0.16 -1.9 210,154 - HGI48_RS00920 0.16 +0.1 210,203 + HGI48_RS00920 0.23 -0.1 210,204 - HGI48_RS00920 0.23 -2.3 210,294 + HGI48_RS00920 0.34 +0.3 210,294 + HGI48_RS00920 0.34 -0.7 210,295 - HGI48_RS00920 0.35 -1.1 210,327 + HGI48_RS00920 0.39 +1.0 210,327 + HGI48_RS00920 0.39 -0.2 210,328 - HGI48_RS00920 0.39 -1.3 210,384 + HGI48_RS00920 0.46 -0.2 210,384 + HGI48_RS00920 0.46 -1.6 210,384 + -0.9 210,385 - HGI48_RS00920 0.46 +0.7 210,385 - HGI48_RS00920 0.46 -2.1 210,385 - -0.3 210,387 - HGI48_RS00920 0.46 +0.5 210,405 + HGI48_RS00920 0.49 -1.3 210,432 - HGI48_RS00920 0.52 -0.1 210,485 + +2.6 210,485 + HGI48_RS00920 0.59 +0.7 210,486 - HGI48_RS00920 0.59 -0.3 210,486 - HGI48_RS00920 0.59 -1.6 210,486 - HGI48_RS00920 0.59 +0.4 210,489 + HGI48_RS00920 0.60 -0.3 210,489 + HGI48_RS00920 0.60 -0.5 210,490 - HGI48_RS00920 0.60 -1.0 210,490 - HGI48_RS00920 0.60 +1.5 210,490 - HGI48_RS00920 0.60 -0.2 210,490 - HGI48_RS00920 0.60 -2.6 210,612 + HGI48_RS00920 0.76 +0.6 210,612 + HGI48_RS00920 0.76 +0.0 210,612 + HGI48_RS00920 0.76 +0.0 210,696 + HGI48_RS00920 0.87 -1.5 210,696 + HGI48_RS00920 0.87 +0.7 210,697 - HGI48_RS00920 0.87 +0.1 210,697 - HGI48_RS00920 0.87 -1.2 210,700 + HGI48_RS00920 0.87 -0.7 210,700 + HGI48_RS00920 0.87 -0.1 210,700 + HGI48_RS00920 0.87 +1.0 210,700 + HGI48_RS00920 0.87 -1.9 210,701 - HGI48_RS00920 0.87 -0.9 210,701 - HGI48_RS00920 0.87 +1.3 210,735 + -1.6 210,736 - -0.6 210,829 + -0.9 210,869 + -1.9 210,969 + -2.9 210,970 - -3.4 210,970 - -0.1 211,074 - +1.3 211,310 - HGI48_RS00925 0.50 -0.6 211,318 + HGI48_RS00925 0.51 +0.3 211,319 - +2.3 211,319 - HGI48_RS00925 0.51 -1.1 211,346 - HGI48_RS00925 0.55 +0.0 211,489 + HGI48_RS00925 0.73 -0.9 211,548 + HGI48_RS00925 0.80 +2.0 211,548 + HGI48_RS00925 0.80 -0.3 211,548 + HGI48_RS00925 0.80 +0.5 211,549 - HGI48_RS00925 0.80 -1.2 211,549 - HGI48_RS00925 0.80 -0.3 211,549 - HGI48_RS00925 0.80 -1.3 211,549 - HGI48_RS00925 0.80 -0.9 211,549 - HGI48_RS00925 0.80 +0.4 211,555 + HGI48_RS00925 0.81 -0.7 211,555 + HGI48_RS00925 0.81 -0.1 211,555 + HGI48_RS00925 0.81 -0.3 211,556 - HGI48_RS00925 0.81 -0.0 211,597 + HGI48_RS00925 0.86 -1.3 211,598 - HGI48_RS00925 0.86 -1.6 211,703 + -0.5
Or see this region's nucleotide sequence