Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00310

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
78,919	+		HGI48_RS00305	0.50	-1.5
78,919	+		HGI48_RS00305	0.50	-0.9
78,919	+		HGI48_RS00305	0.50	-0.9
78,920	-		HGI48_RS00305	0.50	-2.6
78,920	-		HGI48_RS00305	0.50	+0.0
78,920	-		HGI48_RS00305	0.50	-1.1
79,069	-		HGI48_RS00305	0.60	+1.0
79,186	+		HGI48_RS00305	0.68	-1.6
79,187	-		HGI48_RS00305	0.68	+1.2
79,187	-		HGI48_RS00305	0.68	-0.3
79,269	-		HGI48_RS00305	0.74	+0.3
79,602	+				-1.9
79,602	+				-2.3
79,602	+				+1.7
79,602	+				-1.3
79,602	+				+0.7
79,602	+				+0.5
79,602	+				-0.7
79,603	-				-0.2
79,603	-				+0.2
79,603	-				-1.4
79,603	-				-1.3
79,603	-				+1.3
79,603	-				-0.3
79,645	+				-0.0
79,645	+				+0.3
79,645	+				-2.1
79,645	+				+1.1
79,645	+				-1.6
79,645	+				-2.3
79,645	+				-1.4
79,645	+				+1.7
79,645	+				-1.3
79,645	+				-1.6
79,646	-				-0.2
79,646	-				-2.1
79,646	-				-0.0
79,646	-				+2.3
79,646	-				+1.9
79,646	-				+0.9
79,646	-				+0.6
79,646	-				-1.1
79,646	-				-0.0
79,650	-				-3.0
79,713	+				-1.6
79,713	+				+0.1
79,714	-				-0.5
79,714	-				-0.1
79,743	+				-2.7
79,748	-				+2.0
79,759	+				-0.6
79,759	+				+1.5
79,760	-				-2.8
79,760	-				-0.6
79,774	+				+1.7
79,774	+				-0.7
79,775	-				+1.7
79,839	+				-1.0
79,839	+				-0.8
79,839	+				-2.0
79,839	+				-0.1
79,969	-				-1.1
80,003	+				-0.3
80,004	-				+0.9
80,152	-				-0.9
80,233	-		HGI48_RS00310	0.27	-0.9
80,233	-		HGI48_RS00310	0.27	+0.5
80,233	-		HGI48_RS00310	0.27	+1.2
80,368	+		HGI48_RS00310	0.37	-1.9
80,368	+		HGI48_RS00310	0.37	-1.0
80,368	+				-0.9
80,368	+		HGI48_RS00310	0.37	-1.3
80,368	+		HGI48_RS00310	0.37	+0.4
80,368	+		HGI48_RS00310	0.37	+0.8
80,369	-		HGI48_RS00310	0.37	-0.6
80,369	-		HGI48_RS00310	0.37	-1.1
80,369	-		HGI48_RS00310	0.37	+1.1
80,369	-		HGI48_RS00310	0.37	+1.0
80,369	-				-0.3
80,369	-		HGI48_RS00310	0.37	-1.0
80,449	-				+1.7
80,472	+		HGI48_RS00310	0.45	+1.0
80,619	+		HGI48_RS00310	0.56	-2.4
80,619	+		HGI48_RS00310	0.56	-2.0
80,620	-		HGI48_RS00310	0.56	+1.1
80,646	+		HGI48_RS00310	0.58	-0.9
80,646	+				-0.9
80,646	+		HGI48_RS00310	0.58	-0.6
80,646	+		HGI48_RS00310	0.58	-0.5
80,646	+		HGI48_RS00310	0.58	-0.9
80,646	+		HGI48_RS00310	0.58	-0.6
80,646	+		HGI48_RS00310	0.58	-1.6
80,646	+		HGI48_RS00310	0.58	-0.3
80,646	+		HGI48_RS00310	0.58	-1.3
80,646	+		HGI48_RS00310	0.58	+0.7
80,646	+		HGI48_RS00310	0.58	+0.5
80,646	+		HGI48_RS00310	0.58	-0.4
80,646	+		HGI48_RS00310	0.58	-0.9
80,646	+		HGI48_RS00310	0.58	-1.1
80,646	+		HGI48_RS00310	0.58	-1.6
80,646	+		HGI48_RS00310	0.58	+1.4
80,646	+		HGI48_RS00310	0.58	-2.1
80,647	-		HGI48_RS00310	0.58	-1.3
80,647	-		HGI48_RS00310	0.58	-1.4
80,647	-		HGI48_RS00310	0.58	+0.3
80,647	-		HGI48_RS00310	0.58	-0.5
80,647	-		HGI48_RS00310	0.58	-0.3
80,647	-		HGI48_RS00310	0.58	-1.1
80,647	-				+0.1
80,647	-		HGI48_RS00310	0.58	+0.7
80,647	-		HGI48_RS00310	0.58	-1.5
80,647	-				-0.9
80,647	-		HGI48_RS00310	0.58	-2.0
80,647	-				+0.1
80,647	-		HGI48_RS00310	0.58	-0.6
80,848	+		HGI48_RS00310	0.73	+0.5
80,849	-		HGI48_RS00310	0.73	-0.5
80,856	+				+1.3
80,857	-		HGI48_RS00310	0.74	-2.2
80,857	-		HGI48_RS00310	0.74	-1.3
80,857	-				-0.9
80,857	-		HGI48_RS00310	0.74	-0.6
80,857	-		HGI48_RS00310	0.74	-1.0
80,907	+		HGI48_RS00310	0.78	-0.4
80,907	+		HGI48_RS00310	0.78	-0.5
80,908	-		HGI48_RS00310	0.78	-0.5
80,908	-		HGI48_RS00310	0.78	-0.4
80,908	-		HGI48_RS00310	0.78	-0.3
80,910	+		HGI48_RS00310	0.78	-1.6
80,910	+		HGI48_RS00310	0.78	-0.3
81,120	+				-1.6
81,120	+				+0.7
81,120	+				-0.7
81,120	+				-1.6
81,120	+				-1.0
81,121	-				-0.6
81,176	+				+0.2
81,189	+				-0.4
81,203	+				+0.1
81,203	+				+0.2
81,203	+				-0.5
81,204	-				-0.5
81,279	+				+0.5
81,279	+				-0.4
81,284	+				+1.5
81,285	-				+1.0
81,300	+				-0.3
81,305	+				-1.3
81,305	+				+1.6
81,346	+				-1.9
81,379	-				-0.5
81,424	-				+1.2
81,424	-				-1.3
81,509	+				+1.2
81,510	-				-0.9
81,515	+				+1.6
81,515	+				+0.0
81,516	-				+0.1
81,549	-				-0.7
81,549	-				-1.0
81,549	-				+1.6
81,642	-				-0.2
81,673	+				-0.3
81,674	-				+0.6
81,681	+				-2.1
81,681	+				+1.6
81,681	+				-0.2
81,681	+				+1.7
81,681	+				-0.3
81,681	+				-1.3
81,681	+				-0.5
81,681	+				-0.5
81,681	+				-0.5
81,682	-				+0.7
81,682	-				+0.1
81,682	-				+0.3
81,775	-				-0.7
81,775	-				+0.4
81,792	+				+0.9
81,792	+				+0.7
81,793	-				+1.1
81,793	-				-0.1
81,793	-				-0.9
81,804	+				+1.7
81,804	+				+0.1
81,805	-				+1.1
81,813	+				-0.9
81,813	+				+1.5
81,815	+				+0.5
81,815	+				+1.2
81,816	-				+0.1
81,816	-				-1.6
81,816	-				+1.1
81,824	+				+0.4
81,824	+				+1.0
81,829	+				-0.3
81,830	-				-0.5
81,830	-				-1.0
81,830	-				-1.7
81,830	-				+0.9
81,849	+				-0.6
81,849	+				+0.5
81,849	+				-2.0
81,849	+				+0.2
81,849	+				+1.1
81,850	-				+0.2
81,850	-				+0.0
81,850	-				+0.7
81,850	-				-0.6
81,850	-				-0.3
81,852	+				+1.2
81,852	+				+0.4
81,853	-				-1.9
81,853	-				+0.7
81,910	+				+1.4
81,911	-				+0.7
81,967	+		HGI48_RS00315	0.13	-1.9
81,967	+		HGI48_RS00315	0.13	+0.4
81,968	-		HGI48_RS00315	0.14	-1.6
82,060	+		HGI48_RS00315	0.23	-0.3
82,061	-		HGI48_RS00315	0.23	+0.6
82,100	+		HGI48_RS00315	0.27	+1.3
82,101	-		HGI48_RS00315	0.27	-1.7
82,101	-		HGI48_RS00315	0.27	+0.2
82,102	+		HGI48_RS00315	0.27	+0.0
82,102	+		HGI48_RS00315	0.27	+1.5
82,116	+		HGI48_RS00315	0.28	+0.7
82,121	-		HGI48_RS00315	0.29	+0.4
82,167	-		HGI48_RS00315	0.34	+1.2
82,180	+		HGI48_RS00315	0.35	-0.1
82,181	-		HGI48_RS00315	0.35	+1.2
82,181	-		HGI48_RS00315	0.35	-0.5
82,181	-				+1.7