Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00215 and HGI48_RS00220 are separated by 588 nucleotides HGI48_RS00220 and HGI48_RS00225 are separated by 339 nucleotides
HGI48_RS00215: HGI48_RS00215 - glycine--tRNA ligase subunit beta, at 53,209 to 55,278
_RS00215
HGI48_RS00220: HGI48_RS00220 - alpha/beta hydrolase, at 55,867 to 56,637
_RS00220
HGI48_RS00225: HGI48_RS00225 - urea carboxylase, at 56,977 to 60,570
_RS00225
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.276 kb on + strand at 55.301 kb on + strand at 55.302 kb on - strand at 55.305 kb on + strand at 55.310 kb on + strand at 55.311 kb on - strand at 55.322 kb on - strand at 55.322 kb on - strand at 55.336 kb on + strand at 55.336 kb on + strand at 55.337 kb on - strand at 55.341 kb on + strand at 55.341 kb on + strand at 55.341 kb on + strand at 55.342 kb on - strand at 55.342 kb on - strand at 55.342 kb on - strand at 55.342 kb on - strand at 55.353 kb on + strand at 55.354 kb on - strand at 55.482 kb on + strand at 55.541 kb on - strand at 55.546 kb on - strand at 55.633 kb on + strand at 55.743 kb on - strand at 55.743 kb on - strand at 55.762 kb on + strand at 55.799 kb on - strand at 55.821 kb on + strand at 55.905 kb on - strand at 55.974 kb on + strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 55.982 kb on - strand, within HGI48_RS00220 at 56.004 kb on + strand, within HGI48_RS00220 at 56.005 kb on - strand, within HGI48_RS00220 at 56.008 kb on + strand, within HGI48_RS00220 at 56.061 kb on + strand, within HGI48_RS00220 at 56.061 kb on + strand at 56.062 kb on - strand, within HGI48_RS00220 at 56.062 kb on - strand, within HGI48_RS00220 at 56.067 kb on + strand, within HGI48_RS00220 at 56.068 kb on - strand, within HGI48_RS00220 at 56.068 kb on - strand, within HGI48_RS00220 at 56.079 kb on - strand, within HGI48_RS00220 at 56.080 kb on + strand, within HGI48_RS00220 at 56.080 kb on + strand, within HGI48_RS00220 at 56.080 kb on + strand, within HGI48_RS00220 at 56.109 kb on - strand at 56.109 kb on - strand at 56.109 kb on - strand, within HGI48_RS00220 at 56.228 kb on + strand at 56.229 kb on - strand, within HGI48_RS00220 at 56.256 kb on + strand, within HGI48_RS00220 at 56.256 kb on + strand at 56.257 kb on - strand, within HGI48_RS00220 at 56.260 kb on - strand, within HGI48_RS00220 at 56.278 kb on - strand, within HGI48_RS00220 at 56.284 kb on - strand, within HGI48_RS00220 at 56.316 kb on + strand, within HGI48_RS00220 at 56.412 kb on + strand, within HGI48_RS00220 at 56.524 kb on + strand, within HGI48_RS00220 at 56.525 kb on - strand, within HGI48_RS00220 at 56.526 kb on + strand, within HGI48_RS00220 at 56.526 kb on + strand, within HGI48_RS00220 at 56.526 kb on + strand, within HGI48_RS00220 at 56.526 kb on + strand, within HGI48_RS00220 at 56.527 kb on - strand, within HGI48_RS00220 at 56.527 kb on - strand, within HGI48_RS00220 at 56.527 kb on - strand, within HGI48_RS00220 at 56.528 kb on + strand, within HGI48_RS00220 at 56.571 kb on + strand at 56.572 kb on - strand at 56.582 kb on - strand at 56.626 kb on + strand at 56.626 kb on + strand at 56.627 kb on - strand at 56.684 kb on + strand at 56.684 kb on + strand at 56.684 kb on + strand at 56.685 kb on - strand at 56.685 kb on - strand at 56.685 kb on - strand at 56.685 kb on - strand at 56.696 kb on + strand at 56.700 kb on - strand at 56.706 kb on - strand at 56.829 kb on + strand at 56.830 kb on - strand at 56.948 kb on - strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.057 kb on + strand at 57.166 kb on + strand at 57.365 kb on + strand, within HGI48_RS00225 at 57.366 kb on - strand at 57.544 kb on + strand, within HGI48_RS00225 at 57.544 kb on + strand, within HGI48_RS00225 at 57.544 kb on + strand, within HGI48_RS00225 at 57.545 kb on - strand, within HGI48_RS00225 at 57.545 kb on - strand, within HGI48_RS00225 at 57.545 kb on - strand, within HGI48_RS00225 at 57.590 kb on + strand, within HGI48_RS00225 at 57.590 kb on + strand, within HGI48_RS00225 at 57.591 kb on - strand, within HGI48_RS00225 at 57.591 kb on - strand, within HGI48_RS00225 at 57.591 kb on - strand at 57.592 kb on + strand, within HGI48_RS00225 at 57.592 kb on + strand, within HGI48_RS00225 at 57.592 kb on + strand, within HGI48_RS00225 at 57.593 kb on - strand, within HGI48_RS00225 at 57.593 kb on - strand, within HGI48_RS00225 at 57.593 kb on - strand at 57.603 kb on - strand, within HGI48_RS00225 at 57.603 kb on - strand, within HGI48_RS00225 at 57.603 kb on - strand, within HGI48_RS00225
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 55,276 + -0.6 55,301 + +1.1 55,302 - -0.9 55,305 + -0.5 55,310 + +1.5 55,311 - -1.9 55,322 - +1.3 55,322 - -0.6 55,336 + +2.7 55,336 + -0.3 55,337 - -0.3 55,341 + -1.1 55,341 + +1.7 55,341 + -2.5 55,342 - -1.3 55,342 - +0.7 55,342 - -2.4 55,342 - +1.9 55,353 + -0.1 55,354 - +2.5 55,482 + +1.4 55,541 - -0.1 55,546 - -0.0 55,633 + +0.1 55,743 - -0.9 55,743 - -0.7 55,762 + +2.1 55,799 - +0.1 55,821 + -0.7 55,905 - +2.2 55,974 + HGI48_RS00220 0.14 -1.9 55,982 - HGI48_RS00220 0.15 -0.7 55,982 - HGI48_RS00220 0.15 -0.7 55,982 - HGI48_RS00220 0.15 -0.7 55,982 - HGI48_RS00220 0.15 -1.3 56,004 + HGI48_RS00220 0.18 +1.1 56,005 - HGI48_RS00220 0.18 -1.3 56,008 + HGI48_RS00220 0.18 -0.7 56,061 + HGI48_RS00220 0.25 +1.0 56,061 + +0.1 56,062 - HGI48_RS00220 0.25 -0.6 56,062 - HGI48_RS00220 0.25 -0.3 56,067 + HGI48_RS00220 0.26 +0.0 56,068 - HGI48_RS00220 0.26 -2.1 56,068 - HGI48_RS00220 0.26 -2.7 56,079 - HGI48_RS00220 0.27 -0.1 56,080 + HGI48_RS00220 0.28 -0.7 56,080 + HGI48_RS00220 0.28 -1.0 56,080 + HGI48_RS00220 0.28 +0.6 56,109 - -0.9 56,109 - +2.0 56,109 - HGI48_RS00220 0.31 -0.1 56,228 + -0.3 56,229 - HGI48_RS00220 0.47 -1.0 56,256 + HGI48_RS00220 0.50 +0.9 56,256 + -0.9 56,257 - HGI48_RS00220 0.51 +0.7 56,260 - HGI48_RS00220 0.51 +0.1 56,278 - HGI48_RS00220 0.53 +0.1 56,284 - HGI48_RS00220 0.54 -1.3 56,316 + HGI48_RS00220 0.58 -0.1 56,412 + HGI48_RS00220 0.71 -0.9 56,524 + HGI48_RS00220 0.85 -1.6 56,525 - HGI48_RS00220 0.85 -0.3 56,526 + HGI48_RS00220 0.85 -0.2 56,526 + HGI48_RS00220 0.85 +0.3 56,526 + HGI48_RS00220 0.85 -0.2 56,526 + HGI48_RS00220 0.85 +0.6 56,527 - HGI48_RS00220 0.86 +0.6 56,527 - HGI48_RS00220 0.86 -0.3 56,527 - HGI48_RS00220 0.86 -2.1 56,528 + HGI48_RS00220 0.86 -0.1 56,571 + +0.7 56,572 - -0.3 56,582 - +0.4 56,626 + -0.1 56,626 + -0.4 56,627 - +1.0 56,684 + +0.6 56,684 + -0.1 56,684 + -1.6 56,685 - -0.9 56,685 - +1.7 56,685 - +1.5 56,685 - +1.1 56,696 + -0.1 56,700 - +0.9 56,706 - -2.9 56,829 + -0.3 56,830 - -1.3 56,948 - +0.7 57,007 + -1.4 57,007 + -0.3 57,007 + -1.3 57,007 + -2.1 57,007 + +1.6 57,008 - +0.5 57,008 - +0.7 57,057 + -1.3 57,166 + +0.9 57,365 + HGI48_RS00225 0.11 -1.7 57,366 - -0.9 57,544 + HGI48_RS00225 0.16 -2.1 57,544 + HGI48_RS00225 0.16 -2.7 57,544 + HGI48_RS00225 0.16 +0.7 57,545 - HGI48_RS00225 0.16 -1.9 57,545 - HGI48_RS00225 0.16 +0.5 57,545 - HGI48_RS00225 0.16 -0.1 57,590 + HGI48_RS00225 0.17 +0.1 57,590 + HGI48_RS00225 0.17 -0.8 57,591 - HGI48_RS00225 0.17 -2.1 57,591 - HGI48_RS00225 0.17 +0.3 57,591 - +2.0 57,592 + HGI48_RS00225 0.17 +0.7 57,592 + HGI48_RS00225 0.17 -0.3 57,592 + HGI48_RS00225 0.17 -0.6 57,593 - HGI48_RS00225 0.17 +2.1 57,593 - HGI48_RS00225 0.17 -1.9 57,593 - +2.5 57,603 - HGI48_RS00225 0.17 -1.3 57,603 - HGI48_RS00225 0.17 -1.6 57,603 - HGI48_RS00225 0.17 +0.2
Or see this region's nucleotide sequence