Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20860

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,660,305	+		HGI48_RS20855	0.67	+0.9
4,660,305	+		HGI48_RS20855	0.67	+1.2
4,660,305	+		HGI48_RS20855	0.67	-0.0
4,660,305	+		HGI48_RS20855	0.67	-1.6
4,660,306	-		HGI48_RS20855	0.67	-0.7
4,660,306	-		HGI48_RS20855	0.67	-1.0
4,660,306	-		HGI48_RS20855	0.67	+0.0
4,660,306	-		HGI48_RS20855	0.67	-0.5
4,660,306	-		HGI48_RS20855	0.67	+0.5
4,660,306	-		HGI48_RS20855	0.67	-0.1
4,660,306	-				+1.2
4,660,438	+		HGI48_RS20855	0.72	+0.1
4,660,551	-		HGI48_RS20855	0.76	+1.8
4,660,551	-		HGI48_RS20855	0.76	+1.0
4,660,622	+		HGI48_RS20855	0.79	-0.5
4,660,622	+		HGI48_RS20855	0.79	+0.4
4,660,623	-				+0.6
4,660,623	-				+2.4
4,660,623	-		HGI48_RS20855	0.79	-2.3
4,660,623	-		HGI48_RS20855	0.79	+0.4
4,660,704	-		HGI48_RS20855	0.83	-2.1
4,660,742	+		HGI48_RS20855	0.84	+0.5
4,660,743	-		HGI48_RS20855	0.84	+1.0
4,661,297	+				-0.1
4,661,297	+				-1.8
4,661,298	-				+0.2
4,661,298	-				+0.9
4,661,500	+		HGI48_RS20860	0.17	-0.2
4,661,529	+		HGI48_RS20860	0.19	+0.1
4,661,664	+		HGI48_RS20860	0.25	+0.2
4,661,665	-		HGI48_RS20860	0.25	+0.2
4,661,665	-		HGI48_RS20860	0.25	-0.8
4,661,682	+				+0.2
4,661,682	+		HGI48_RS20860	0.26	+0.5
4,661,682	+				+1.8
4,661,682	+		HGI48_RS20860	0.26	+0.0
4,661,682	+				+0.6
4,661,683	-		HGI48_RS20860	0.26	-0.0
4,661,683	-		HGI48_RS20860	0.26	+0.7
4,661,683	-		HGI48_RS20860	0.26	-0.4
4,661,707	+		HGI48_RS20860	0.27	-0.1
4,661,860	+		HGI48_RS20860	0.35	-0.8
4,661,943	+		HGI48_RS20860	0.38	-0.4
4,661,943	+		HGI48_RS20860	0.38	-0.2
4,661,944	-		HGI48_RS20860	0.39	+0.3
4,661,944	-		HGI48_RS20860	0.39	-0.4
4,661,944	-		HGI48_RS20860	0.39	-0.6
4,662,004	+		HGI48_RS20860	0.41	+1.9
4,662,004	+		HGI48_RS20860	0.41	+0.8
4,662,004	+		HGI48_RS20860	0.41	-0.4
4,662,004	+		HGI48_RS20860	0.41	-1.7
4,662,004	+		HGI48_RS20860	0.41	-0.8
4,662,004	+		HGI48_RS20860	0.41	+2.1
4,662,004	+		HGI48_RS20860	0.41	+1.5
4,662,004	+		HGI48_RS20860	0.41	-1.0
4,662,005	-		HGI48_RS20860	0.41	+0.4
4,662,005	-		HGI48_RS20860	0.41	-0.6
4,662,005	-		HGI48_RS20860	0.41	-1.5
4,662,005	-		HGI48_RS20860	0.41	-0.7
4,662,005	-		HGI48_RS20860	0.41	+0.4
4,662,028	-		HGI48_RS20860	0.43	-0.3
4,662,096	+		HGI48_RS20860	0.46	+1.8
4,662,096	+		HGI48_RS20860	0.46	+1.2
4,662,096	+		HGI48_RS20860	0.46	+1.8
4,662,097	-		HGI48_RS20860	0.46	-1.3
4,662,097	-		HGI48_RS20860	0.46	-0.6
4,662,445	+				+2.6
4,662,489	+		HGI48_RS20860	0.65	+1.1
4,662,489	+		HGI48_RS20860	0.65	+0.4
4,662,490	-		HGI48_RS20860	0.65	-2.1
4,662,490	-		HGI48_RS20860	0.65	-2.1
4,662,490	-		HGI48_RS20860	0.65	-0.2
4,662,490	-		HGI48_RS20860	0.65	-0.3
4,662,495	+		HGI48_RS20860	0.65	+0.1
4,662,496	-		HGI48_RS20860	0.65	-2.1
4,662,496	-		HGI48_RS20860	0.65	-0.6
4,662,496	-		HGI48_RS20860	0.65	+0.2
4,662,676	+		HGI48_RS20860	0.74	-1.6
4,662,676	+				+0.6
4,662,676	+		HGI48_RS20860	0.74	-1.1
4,662,677	-		HGI48_RS20860	0.74	-1.3
4,662,677	-		HGI48_RS20860	0.74	-1.3
4,662,677	-		HGI48_RS20860	0.74	-0.2
4,662,677	-				+1.2
4,662,677	-		HGI48_RS20860	0.74	+0.4
4,662,677	-		HGI48_RS20860	0.74	-0.2
4,662,677	-		HGI48_RS20860	0.74	+0.2
4,662,677	-		HGI48_RS20860	0.74	+0.1
4,662,678	+		HGI48_RS20860	0.74	+1.4
4,662,679	-		HGI48_RS20860	0.74	+0.7
4,662,742	-		HGI48_RS20860	0.77	-1.1
4,662,742	-		HGI48_RS20860	0.77	-0.8
4,662,822	+				+1.2
4,662,822	+				-0.4
4,662,822	+		HGI48_RS20860	0.81	-0.1
4,662,822	+		HGI48_RS20860	0.81	-0.8
4,662,823	-		HGI48_RS20860	0.81	-1.4
4,662,823	-		HGI48_RS20860	0.81	-0.5
4,662,833	-		HGI48_RS20860	0.81	+1.4
4,662,834	+		HGI48_RS20860	0.81	-2.3
4,662,834	+		HGI48_RS20860	0.81	-0.4
4,662,834	+				+0.2
4,662,834	+		HGI48_RS20860	0.81	+2.0
4,662,834	+		HGI48_RS20860	0.81	-0.8
4,662,834	+		HGI48_RS20860	0.81	-0.8
4,662,834	+		HGI48_RS20860	0.81	-1.1
4,662,834	+		HGI48_RS20860	0.81	+1.1
4,662,834	+		HGI48_RS20860	0.81	-1.5
4,662,834	+		HGI48_RS20860	0.81	+0.9
4,662,834	+		HGI48_RS20860	0.81	-1.4
4,662,834	+				-0.4
4,662,834	+		HGI48_RS20860	0.81	-0.2
4,662,834	+		HGI48_RS20860	0.81	-0.7
4,662,834	+		HGI48_RS20860	0.81	-2.1
4,662,834	+				-0.4
4,662,834	+		HGI48_RS20860	0.81	-0.8
4,662,834	+		HGI48_RS20860	0.81	-1.0
4,662,834	+		HGI48_RS20860	0.81	+0.8
4,662,834	+		HGI48_RS20860	0.81	-1.1
4,662,834	+				-0.4
4,662,834	+		HGI48_RS20860	0.81	-1.1
4,662,835	-		HGI48_RS20860	0.81	+0.2
4,662,835	-		HGI48_RS20860	0.81	-0.6
4,662,835	-		HGI48_RS20860	0.81	+0.4
4,662,835	-		HGI48_RS20860	0.81	-0.1
4,662,835	-		HGI48_RS20860	0.81	+0.0
4,662,835	-		HGI48_RS20860	0.81	-1.0
4,662,835	-		HGI48_RS20860	0.81	-0.5
4,662,835	-		HGI48_RS20860	0.81	-0.8
4,662,835	-		HGI48_RS20860	0.81	-0.7
4,662,835	-		HGI48_RS20860	0.81	-1.1
4,662,835	-				+1.2
4,662,835	-				-0.4
4,662,835	-		HGI48_RS20860	0.81	-2.0
4,662,835	-		HGI48_RS20860	0.81	-0.8
4,662,835	-		HGI48_RS20860	0.81	-0.6
4,662,920	+		HGI48_RS20860	0.85	+0.5
4,662,920	+		HGI48_RS20860	0.85	+1.2
4,662,921	-		HGI48_RS20860	0.85	-0.2
4,662,923	+		HGI48_RS20860	0.85	-1.1
4,662,924	-		HGI48_RS20860	0.85	-0.6
4,662,942	+		HGI48_RS20860	0.86	-1.6
4,662,942	+		HGI48_RS20860	0.86	+2.4
4,662,942	+		HGI48_RS20860	0.86	+0.8
4,662,942	+		HGI48_RS20860	0.86	-0.1
4,662,943	-		HGI48_RS20860	0.86	-2.1
4,662,943	-		HGI48_RS20860	0.86	+0.7
4,662,943	-		HGI48_RS20860	0.86	+0.0
4,662,943	-		HGI48_RS20860	0.86	-0.1
4,662,943	-		HGI48_RS20860	0.86	-0.8
4,662,943	-				-0.4
4,662,959	+		HGI48_RS20860	0.87	+0.8
4,662,959	+		HGI48_RS20860	0.87	-0.5
4,662,960	-		HGI48_RS20860	0.87	-2.5
4,663,023	+				-0.9
4,663,024	-				-0.6
4,663,025	+				-0.1
4,663,025	+				+0.9
4,663,025	+				-0.8
4,663,025	+				-0.3
4,663,025	+				-0.4
4,663,025	+				+0.9
4,663,025	+				+1.5
4,663,025	+				+0.6
4,663,025	+				-0.4
4,663,025	+				-0.8
4,663,026	-				-0.8
4,663,026	-				-1.6
4,663,026	-				-0.5
4,663,026	-				-0.1
4,663,026	-				-0.9
4,663,026	-				+0.9
4,663,026	-				-1.1
4,663,026	-				-0.9
4,663,026	-				+1.5
4,663,027	+				+0.1
4,663,027	+				-0.2
4,663,027	+				-0.1
4,663,027	+				+1.3
4,663,027	+				-1.0
4,663,027	+				+0.3
4,663,028	-				-0.6
4,663,028	-				+1.6
4,663,028	-				+0.6
4,663,028	-				+0.2
4,663,028	-				-0.4
4,663,028	-				-0.6
4,663,028	-				-1.0
4,663,028	-				-0.8
4,663,028	-				+0.2
4,663,028	-				-1.1
4,663,028	-				+0.4
4,663,028	-				-0.6
4,663,028	-				-1.6
4,663,028	-				+0.2
4,663,028	-				+1.5
4,663,029	+				-1.6
4,663,064	+				-1.0
4,663,064	+				+0.2
4,663,073	+				+1.2
4,663,074	-				-0.4
4,663,133	+				+0.2
4,663,133	+				-0.3
4,663,133	+				-0.4
4,663,133	+				+0.2
4,663,133	+				-2.1
4,663,133	+				-0.8
4,663,133	+				-0.1
4,663,133	+				+0.6
4,663,134	-				+0.1
4,663,134	-				+0.9
4,663,134	-				-0.8
4,663,134	-				+0.2
4,663,134	-				+1.1
4,663,135	+				+0.9
4,663,135	+				-0.4
4,663,135	+				-0.5
4,663,135	+				-0.1
4,663,136	-				-1.4
4,663,136	-				-1.0
4,663,136	-				-0.4
4,663,136	-				-0.3
4,663,136	-				+0.1
4,663,136	-				-0.0
4,663,136	-				-0.8
4,663,136	-				+1.5
4,663,136	-				-0.2
4,663,138	-				-1.4
4,663,138	-				-0.3
4,663,200	-				+0.2
4,663,232	+				+1.2
4,663,232	+				-0.3
4,663,232	+				+0.5
4,663,234	+				+1.8
4,663,234	+				-1.6
4,663,235	-				+0.6
4,663,235	-				+0.2
4,663,242	+				+0.1
4,663,243	-				+1.7
4,663,246	+				+0.2
4,663,246	+				+1.7
4,663,247	-				-0.2
4,663,247	-				+0.7
4,663,247	-				-2.0
4,663,323	+				+1.0
4,663,324	-				-0.4
4,663,339	+				-0.6
4,663,339	+				+0.8
4,663,361	-				-0.2
4,663,434	-		HGI48_RS20865	0.12	+0.5
4,663,434	-		HGI48_RS20865	0.12	-0.2
4,663,528	-		HGI48_RS20865	0.23	+1.2
4,663,624	+		HGI48_RS20865	0.35	+0.3
4,663,624	+		HGI48_RS20865	0.35	-3.1
4,663,624	+		HGI48_RS20865	0.35	+1.4
4,663,624	+		HGI48_RS20865	0.35	-1.1
4,663,624	+		HGI48_RS20865	0.35	+0.5
4,663,624	+		HGI48_RS20865	0.35	-0.3
4,663,625	-		HGI48_RS20865	0.35	-0.1
4,663,625	-		HGI48_RS20865	0.35	+0.2
4,663,625	-		HGI48_RS20865	0.35	+0.2
4,663,842	+		HGI48_RS20865	0.62	-0.8
4,663,842	+		HGI48_RS20865	0.62	+0.9
4,663,863	-		HGI48_RS20865	0.64	-1.4
4,663,863	-				+2.2
4,663,863	-		HGI48_RS20865	0.64	+0.9
4,663,863	-		HGI48_RS20865	0.64	+1.8
4,663,863	-		HGI48_RS20865	0.64	+1.3
4,663,863	-		HGI48_RS20865	0.64	+0.8
4,663,919	+		HGI48_RS20865	0.71	+0.5
4,663,919	+		HGI48_RS20865	0.71	+1.1
4,663,920	-		HGI48_RS20865	0.71	+0.2
4,663,920	-		HGI48_RS20865	0.71	-0.6
4,663,981	+				+2.2
4,663,981	+		HGI48_RS20865	0.79	-0.1
4,663,981	+		HGI48_RS20865	0.79	+2.2
4,663,982	-		HGI48_RS20865	0.79	-0.6
4,663,982	-		HGI48_RS20865	0.79	-0.2
4,664,084	-				+0.6
4,664,145	+				+0.2
4,664,154	-				-0.4