Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20160

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,500,483	+		HGI48_RS20135	0.67	+0.9
4,500,483	+				+2.6
4,500,484	-				+1.2
4,500,506	-		HGI48_RS20135	0.70	-0.6
4,500,523	-		HGI48_RS20135	0.72	-1.1
4,500,659	+		HGI48_RS20135	0.89	-1.6
4,500,686	+				-0.4
4,500,687	-				-2.1
4,500,707	-				-1.5
4,500,720	+				+0.8
4,500,748	+				+0.8
4,500,748	+				+2.2
4,500,749	-				+0.4
4,500,749	-				-0.1
4,500,749	-				+0.9
4,500,749	-				-2.5
4,500,749	-				+1.2
4,500,749	-				+1.6
4,500,791	+				-1.1
4,500,791	+				+0.8
4,500,791	+				+0.5
4,500,792	-				+1.1
4,500,792	-				-0.9
4,500,802	+				+0.4
4,500,824	-				-0.2
4,501,024	+		HGI48_RS20145	0.65	+0.2
4,501,389	-				+1.8
4,501,422	+				+0.0
4,501,446	-				-0.1
4,501,455	-				+5.0
4,501,537	-				-0.4
4,501,577	+				+0.6
4,501,577	+				+1.8
4,501,577	+				-1.1
4,501,577	+				+0.1
4,501,577	+				-0.8
4,501,578	-				-0.8
4,501,578	-				+0.1
4,501,578	-				-0.2
4,501,578	-				+1.2
4,501,578	-				-2.1
4,501,578	-				+1.0
4,501,578	-				+0.0
4,501,578	-				-0.8
4,501,578	-				-1.6
4,501,619	+				+1.6
4,501,619	+		HGI48_RS20160	0.12	-1.0
4,501,620	-		HGI48_RS20160	0.12	-1.3
4,501,620	-		HGI48_RS20160	0.12	-2.1
4,501,620	-		HGI48_RS20160	0.12	+0.1
4,501,702	+		HGI48_RS20160	0.18	-1.0
4,501,751	+		HGI48_RS20160	0.21	+0.2
4,501,751	+		HGI48_RS20160	0.21	-1.6
4,501,752	-				+0.2
4,501,757	+		HGI48_RS20160	0.22	+0.8
4,501,757	+		HGI48_RS20160	0.22	+0.8
4,501,757	+		HGI48_RS20160	0.22	-1.4
4,501,757	+		HGI48_RS20160	0.22	-1.8
4,501,758	-		HGI48_RS20160	0.22	+1.1
4,501,758	-		HGI48_RS20160	0.22	-1.1
4,501,758	-		HGI48_RS20160	0.22	-0.3
4,501,790	+		HGI48_RS20160	0.24	+1.0
4,501,790	+		HGI48_RS20160	0.24	-0.8
4,501,790	+		HGI48_RS20160	0.24	-0.0
4,501,790	+		HGI48_RS20160	0.24	-0.0
4,501,790	+		HGI48_RS20160	0.24	+0.2
4,501,791	-		HGI48_RS20160	0.24	+0.2
4,501,791	-		HGI48_RS20160	0.24	-1.6
4,501,791	-		HGI48_RS20160	0.24	-0.8
4,501,910	+		HGI48_RS20160	0.33	-0.8
4,501,911	-		HGI48_RS20160	0.33	-1.1
4,501,911	-		HGI48_RS20160	0.33	+0.5
4,501,917	+		HGI48_RS20160	0.33	-2.0
4,501,917	+		HGI48_RS20160	0.33	+0.9
4,501,917	+		HGI48_RS20160	0.33	+0.3
4,501,917	+		HGI48_RS20160	0.33	+0.5
4,501,918	-		HGI48_RS20160	0.33	+0.6
4,501,918	-		HGI48_RS20160	0.33	+1.7
4,501,918	-		HGI48_RS20160	0.33	+1.5
4,501,918	-		HGI48_RS20160	0.33	+0.7
4,501,931	+				+3.5
4,501,931	+		HGI48_RS20160	0.34	+0.5
4,501,931	+		HGI48_RS20160	0.34	+1.2
4,501,932	-		HGI48_RS20160	0.34	-2.4
4,501,932	-		HGI48_RS20160	0.34	+0.2
4,501,932	-		HGI48_RS20160	0.34	-0.3
4,501,932	-		HGI48_RS20160	0.34	-1.1
4,501,932	-		HGI48_RS20160	0.34	+0.5
4,502,204	+		HGI48_RS20160	0.54	+1.4
4,502,368	+		HGI48_RS20160	0.66	-0.8
4,502,368	+		HGI48_RS20160	0.66	+1.2
4,502,369	-		HGI48_RS20160	0.66	-1.1
4,502,369	-		HGI48_RS20160	0.66	+0.7
4,502,405	+		HGI48_RS20160	0.68	+0.7
4,502,405	+		HGI48_RS20160	0.68	-1.0
4,502,405	+		HGI48_RS20160	0.68	-2.0
4,502,501	+				+1.8
4,502,501	+		HGI48_RS20160	0.75	-0.1
4,502,501	+		HGI48_RS20160	0.75	-1.0
4,502,501	+		HGI48_RS20160	0.75	+0.4
4,502,501	+		HGI48_RS20160	0.75	+1.2
4,502,501	+				+1.8
4,502,501	+		HGI48_RS20160	0.75	+1.2
4,502,501	+				-0.4
4,502,502	-		HGI48_RS20160	0.75	-0.8
4,502,502	-		HGI48_RS20160	0.75	-1.1
4,502,502	-				+0.2
4,502,502	-		HGI48_RS20160	0.75	-0.1
4,502,594	+		HGI48_RS20160	0.82	-0.6
4,502,594	+		HGI48_RS20160	0.82	-0.7
4,502,594	+		HGI48_RS20160	0.82	-1.1
4,502,594	+		HGI48_RS20160	0.82	-0.8
4,502,594	+		HGI48_RS20160	0.82	+0.9
4,502,595	-		HGI48_RS20160	0.82	+0.2
4,502,694	+		HGI48_RS20160	0.89	-1.1
4,502,695	-		HGI48_RS20160	0.89	+0.9
4,502,695	-		HGI48_RS20160	0.89	-0.5
4,502,695	-		HGI48_RS20160	0.89	+1.2
4,502,696	+				-0.4
4,502,696	+		HGI48_RS20160	0.89	+0.1
4,502,696	+		HGI48_RS20160	0.89	+0.3
4,502,697	-		HGI48_RS20160	0.89	+0.4
4,502,697	-				+0.2
4,502,697	-		HGI48_RS20160	0.89	+2.3
4,502,697	-		HGI48_RS20160	0.89	+1.2
4,502,793	+				-0.9
4,502,794	-				+0.2
4,502,794	-				-0.0
4,502,794	-				-0.6
4,502,838	+				-0.4
4,502,839	-				-0.7
4,502,839	-				+1.2
4,502,839	-				+1.5
4,502,847	+				-0.2
4,502,847	+				-0.2
4,502,847	+				-1.5
4,502,848	-				+0.6
4,502,848	-				+0.7
4,502,848	-				+1.2
4,502,849	+				+1.7
4,502,849	+				-0.1
4,502,849	+				-1.4
4,502,849	+				-0.4
4,502,849	+				-0.9
4,502,849	+				+1.2
4,502,849	+				-0.8
4,502,849	+				+0.8
4,502,849	+				-0.5
4,502,849	+				-0.6
4,502,850	-				+0.2
4,502,850	-				-0.6
4,502,850	-				+0.4
4,502,850	-				-1.6
4,502,850	-				-0.6
4,502,850	-				-0.5
4,502,850	-				+1.2
4,502,850	-				+0.9
4,502,850	-				-0.4
4,502,850	-				-1.1
4,502,850	-				-0.7
4,502,850	-				-1.6
4,502,850	-				-0.9
4,502,850	-				-1.4
4,502,850	-				+1.4
4,502,877	-				+0.5
4,502,904	+				+0.9
4,502,904	+				+0.1
4,502,905	-				-2.5
4,502,989	+				-1.6
4,503,012	+				-0.3
4,503,013	-				-1.6
4,503,041	+				-0.8
4,503,131	+				+0.1
4,503,131	+				+1.2
4,503,132	-				+0.1
4,503,132	-				-1.6
4,503,138	-				-0.1
4,503,290	+		HGI48_RS20165	0.21	+0.5
4,503,290	+		HGI48_RS20165	0.21	+1.1
4,503,290	+		HGI48_RS20165	0.21	-0.7
4,503,290	+		HGI48_RS20165	0.21	+0.2
4,503,290	+		HGI48_RS20165	0.21	-1.2
4,503,290	+		HGI48_RS20165	0.21	-2.5
4,503,291	-		HGI48_RS20165	0.21	+0.5
4,503,291	-		HGI48_RS20165	0.21	+0.6
4,503,291	-		HGI48_RS20165	0.21	+1.2
4,503,311	+		HGI48_RS20165	0.24	+0.7
4,503,312	-		HGI48_RS20165	0.24	-0.1
4,503,312	-		HGI48_RS20165	0.24	-1.0
4,503,449	+		HGI48_RS20165	0.42	-0.4
4,503,450	-		HGI48_RS20165	0.43	-0.1
4,503,671	+		HGI48_RS20165	0.72	-1.8
4,503,671	+		HGI48_RS20165	0.72	-2.1
4,503,672	-		HGI48_RS20165	0.73	-0.8
4,503,672	-		HGI48_RS20165	0.73	+0.1
4,503,800	-				+1.8