Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19630

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,382,135	-		HGI48_RS19625	0.67	-0.0
4,382,135	-		HGI48_RS19625	0.67	+1.5
4,382,146	+		HGI48_RS19625	0.68	+0.9
4,382,146	+		HGI48_RS19625	0.68	-1.7
4,382,146	+		HGI48_RS19625	0.68	-2.8
4,382,146	+		HGI48_RS19625	0.68	-0.3
4,382,146	+		HGI48_RS19625	0.68	+0.8
4,382,147	-				+1.2
4,382,147	-		HGI48_RS19625	0.68	+1.5
4,382,147	-		HGI48_RS19625	0.68	+1.2
4,382,148	+		HGI48_RS19625	0.68	-0.2
4,382,148	+		HGI48_RS19625	0.68	-0.8
4,382,149	-		HGI48_RS19625	0.68	+0.1
4,382,149	-		HGI48_RS19625	0.68	-0.4
4,382,149	-		HGI48_RS19625	0.68	+0.2
4,382,316	+		HGI48_RS19625	0.83	-1.2
4,382,317	-		HGI48_RS19625	0.83	+0.4
4,382,317	-				+1.2
4,382,317	-		HGI48_RS19625	0.83	-0.2
4,382,320	+		HGI48_RS19625	0.83	+1.7
4,382,320	+		HGI48_RS19625	0.83	+0.8
4,382,320	+		HGI48_RS19625	0.83	+0.0
4,382,320	+		HGI48_RS19625	0.83	-2.2
4,382,321	-		HGI48_RS19625	0.83	+0.0
4,382,321	-		HGI48_RS19625	0.83	-0.3
4,382,353	+		HGI48_RS19625	0.86	-0.8
4,382,353	+		HGI48_RS19625	0.86	-0.4
4,382,354	-		HGI48_RS19625	0.86	+1.3
4,382,385	+		HGI48_RS19625	0.89	-1.2
4,382,386	-				+2.2
4,382,404	+				-1.2
4,382,404	+				-0.8
4,382,410	+				+1.7
4,382,410	+				+1.2
4,382,411	-				+1.2
4,382,411	-				-0.8
4,382,411	-				+0.3
4,382,451	+				+1.2
4,382,455	+				-1.2
4,382,455	+				-0.1
4,382,456	-				+0.5
4,382,456	-				-0.1
4,382,456	-				-1.7
4,382,456	-				+0.2
4,382,502	+				+0.6
4,382,502	+				+0.2
4,382,503	-				-1.0
4,382,507	-				-1.2
4,382,596	+				-0.0
4,382,615	-				-0.3
4,382,615	-				-1.4
4,382,656	+				-1.2
4,382,659	+				-0.3
4,382,664	+				+1.2
4,382,665	-				-1.3
4,382,692	-				-0.4
4,382,692	-				+0.2
4,382,727	+				-1.2
4,382,727	+				-0.1
4,382,727	+				+0.6
4,382,728	-				-1.2
4,382,728	-				-0.3
4,382,741	-				-1.0
4,382,784	-				+0.4
4,382,784	-				-1.7
4,382,787	+				-2.2
4,382,788	-				-0.4
4,382,788	-				+0.2
4,382,794	+				+1.3
4,382,794	+				-0.4
4,382,844	-				+1.0
4,382,847	+				-0.0
4,382,848	-				-0.4
4,382,901	-				+0.5
4,382,937	+				+0.5
4,382,937	+				+0.8
4,382,937	+				-0.4
4,382,938	-				+0.2
4,382,941	+				+0.7
4,382,941	+				+0.8
4,382,941	+				+0.4
4,382,941	+				-0.3
4,382,941	+				-0.1
4,382,942	-				+0.2
4,382,942	-				-0.0
4,382,942	-				-0.0
4,382,942	-				-1.4
4,382,942	-				-1.5
4,382,942	-				-0.3
4,382,946	-				-1.2
4,382,956	+				-0.2
4,382,980	+				+0.7
4,382,980	+				+0.9
4,382,981	-				-0.4
4,382,981	-				-0.5
4,383,013	-				-0.8
4,383,031	+				+0.5
4,383,031	+				+0.5
4,383,031	+				-0.4
4,383,031	+				+0.6
4,383,031	+				+0.6
4,383,031	+				-1.8
4,383,032	-				-0.3
4,383,032	-				-1.2
4,383,032	-				+2.2
4,383,032	-				+0.6
4,383,032	-				+1.6
4,383,032	-				+0.2
4,383,032	-				-1.4
4,383,051	+				-1.8
4,383,052	-				+0.2
4,383,052	-				-0.8
4,383,052	-				-1.2
4,383,176	+				-1.1
4,383,177	-				-0.4
4,383,211	+		HGI48_RS19630	0.10	-0.3
4,383,240	-		HGI48_RS19630	0.13	-0.0
4,383,240	-		HGI48_RS19630	0.13	+0.7
4,383,291	-		HGI48_RS19630	0.18	+1.5
4,383,317	+		HGI48_RS19630	0.20	-2.4
4,383,317	+		HGI48_RS19630	0.20	+1.4
4,383,317	+		HGI48_RS19630	0.20	-1.7
4,383,318	-		HGI48_RS19630	0.20	-0.8
4,383,321	+		HGI48_RS19630	0.20	-0.7
4,383,321	+		HGI48_RS19630	0.20	+0.9
4,383,321	+		HGI48_RS19630	0.20	+0.2
4,383,321	+		HGI48_RS19630	0.20	-1.4
4,383,321	+		HGI48_RS19630	0.20	-0.2
4,383,321	+		HGI48_RS19630	0.20	-1.2
4,383,321	+		HGI48_RS19630	0.20	-0.1
4,383,321	+		HGI48_RS19630	0.20	+0.2
4,383,321	+		HGI48_RS19630	0.20	+0.7
4,383,322	-		HGI48_RS19630	0.20	-0.0
4,383,322	-		HGI48_RS19630	0.20	-0.4
4,383,322	-		HGI48_RS19630	0.20	+1.4
4,383,322	-		HGI48_RS19630	0.20	+0.2
4,383,322	-		HGI48_RS19630	0.20	-0.7
4,383,459	-		HGI48_RS19630	0.32	+0.7
4,383,497	-		HGI48_RS19630	0.36	-1.8
4,383,499	+		HGI48_RS19630	0.36	-1.5
4,383,548	+		HGI48_RS19630	0.40	+1.2
4,383,548	+		HGI48_RS19630	0.40	-1.2
4,383,548	+		HGI48_RS19630	0.40	+0.0
4,383,548	+		HGI48_RS19630	0.40	-0.4
4,383,548	+		HGI48_RS19630	0.40	-0.8
4,383,548	+		HGI48_RS19630	0.40	+0.7
4,383,548	+		HGI48_RS19630	0.40	+1.5
4,383,549	-		HGI48_RS19630	0.40	+0.5
4,383,644	+		HGI48_RS19630	0.49	-1.2
4,383,644	+		HGI48_RS19630	0.49	+0.2
4,383,644	+		HGI48_RS19630	0.49	-1.1
4,383,644	+		HGI48_RS19630	0.49	-0.8
4,383,645	-		HGI48_RS19630	0.49	-0.8
4,383,684	+		HGI48_RS19630	0.52	-2.5
4,383,684	+		HGI48_RS19630	0.52	-0.1
4,383,684	+		HGI48_RS19630	0.52	+0.5
4,383,684	+		HGI48_RS19630	0.52	+0.2
4,383,684	+		HGI48_RS19630	0.52	+0.5
4,383,685	-		HGI48_RS19630	0.52	-0.6
4,383,685	-		HGI48_RS19630	0.52	-1.0
4,383,685	-		HGI48_RS19630	0.52	-0.1
4,383,685	-				+1.2
4,383,685	-		HGI48_RS19630	0.52	+1.0
4,383,685	-		HGI48_RS19630	0.52	+0.1
4,383,685	-		HGI48_RS19630	0.52	-1.8
4,383,777	+		HGI48_RS19630	0.61	+0.6
4,383,777	+		HGI48_RS19630	0.61	+1.2
4,383,777	+		HGI48_RS19630	0.61	-0.4
4,383,777	+		HGI48_RS19630	0.61	-1.3
4,383,778	-		HGI48_RS19630	0.61	+1.2
4,383,778	-		HGI48_RS19630	0.61	-0.6
4,383,778	-		HGI48_RS19630	0.61	-0.3
4,383,792	+		HGI48_RS19630	0.62	-1.2
4,383,792	+		HGI48_RS19630	0.62	+2.0
4,383,846	+		HGI48_RS19630	0.67	+2.2
4,383,846	+		HGI48_RS19630	0.67	+1.0
4,383,846	+		HGI48_RS19630	0.67	-1.2
4,383,846	+		HGI48_RS19630	0.67	-1.7
4,383,847	-		HGI48_RS19630	0.67	-0.2
4,383,847	-		HGI48_RS19630	0.67	+1.2
4,383,847	-		HGI48_RS19630	0.67	-1.4
4,383,847	-		HGI48_RS19630	0.67	+0.2
4,383,847	-		HGI48_RS19630	0.67	+1.7
4,383,848	+		HGI48_RS19630	0.67	-0.0
4,383,849	-		HGI48_RS19630	0.67	-3.3
4,383,859	-		HGI48_RS19630	0.68	+0.4
4,383,971	+		HGI48_RS19630	0.78	-1.4
4,384,032	+		HGI48_RS19630	0.83	-0.1
4,384,032	+		HGI48_RS19630	0.83	-0.4
4,384,032	+		HGI48_RS19630	0.83	+0.2
4,384,032	+		HGI48_RS19630	0.83	+0.6
4,384,032	+		HGI48_RS19630	0.83	+1.0
4,384,033	-		HGI48_RS19630	0.83	-0.8
4,384,033	-		HGI48_RS19630	0.83	+1.5
4,384,033	-		HGI48_RS19630	0.83	+0.7
4,384,055	+				+1.2
4,384,066	-		HGI48_RS19630	0.86	-0.0
4,384,067	+		HGI48_RS19630	0.86	+0.7
4,384,067	+		HGI48_RS19630	0.86	+0.8
4,384,116	+				-1.7
4,384,116	+				+1.2
4,384,116	+				-0.3
4,384,116	+				-0.2
4,384,116	+				-1.4
4,384,116	+				-1.1
4,384,117	-				+0.7
4,384,117	-				+0.9
4,384,117	-				+0.7
4,384,117	-				-0.1
4,384,123	-				+0.9
4,384,163	+				-0.4
4,384,167	+				-0.8
4,384,168	-				-0.4
4,384,168	-				+1.6
4,384,182	-				+0.5
4,384,214	+				+1.5
4,384,215	-				+2.2
4,384,215	-				+0.4
4,384,215	-				+0.6
4,384,218	+				-0.8
4,384,218	+				-0.1
4,384,218	+				+0.2
4,384,219	-				-0.4
4,384,331	+				-1.8
4,384,373	+				+0.6
4,384,373	+				+1.2
4,384,373	+				-1.4
4,384,388	+				-1.4
4,384,397	+				+1.2
4,384,397	+				-1.3
4,384,397	+				+0.1
4,384,397	+				-1.7
4,384,398	-				+0.7
4,384,398	-				+0.9
4,384,398	-				-1.0
4,384,398	-				+0.2
4,384,398	-				+0.0
4,384,415	-				+0.4
4,384,656	+		HGI48_RS19635	0.21	-0.2
4,384,656	+		HGI48_RS19635	0.21	+0.3
4,384,657	-		HGI48_RS19635	0.21	-1.2
4,384,657	-				+2.7
4,384,657	-		HGI48_RS19635	0.21	+0.3
4,384,657	-		HGI48_RS19635	0.21	+0.1
4,384,727	+		HGI48_RS19635	0.27	+0.2
4,384,738	+		HGI48_RS19635	0.28	-1.5
4,384,738	+		HGI48_RS19635	0.28	-0.2
4,384,738	+		HGI48_RS19635	0.28	+1.2
4,384,738	+				+1.2
4,384,738	+		HGI48_RS19635	0.28	+1.3
4,384,738	+		HGI48_RS19635	0.28	-0.8
4,384,739	-		HGI48_RS19635	0.28	-2.2
4,384,751	+		HGI48_RS19635	0.29	-0.7
4,384,751	+		HGI48_RS19635	0.29	+1.2
4,384,751	+				-0.4
4,384,751	+		HGI48_RS19635	0.29	+0.9
4,384,752	-		HGI48_RS19635	0.29	+0.6
4,384,752	-		HGI48_RS19635	0.29	+0.4
4,384,752	-		HGI48_RS19635	0.29	+1.2
4,384,833	+		HGI48_RS19635	0.35	-0.8
4,384,834	-		HGI48_RS19635	0.35	-0.4
4,384,834	-		HGI48_RS19635	0.35	+1.3
4,384,931	+		HGI48_RS19635	0.43	-0.2
4,384,931	+		HGI48_RS19635	0.43	-0.5
4,384,932	-		HGI48_RS19635	0.43	-0.4
4,384,950	-		HGI48_RS19635	0.44	-0.8
4,384,972	-		HGI48_RS19635	0.46	+0.2
4,384,994	+		HGI48_RS19635	0.48	-2.4
4,384,995	-		HGI48_RS19635	0.48	+0.4
4,385,024	+		HGI48_RS19635	0.50	+1.5
4,385,058	+		HGI48_RS19635	0.53	-1.7
4,385,078	+				+1.2
4,385,079	-		HGI48_RS19635	0.55	-0.8
4,385,079	-		HGI48_RS19635	0.55	+0.2
4,385,130	+		HGI48_RS19635	0.59	-1.2
4,385,131	-		HGI48_RS19635	0.59	+0.7
4,385,131	-		HGI48_RS19635	0.59	-1.2
4,385,151	-		HGI48_RS19635	0.60	-1.8