Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19500 and HGI48_RS19505 are separated by 149 nucleotides HGI48_RS19505 and HGI48_RS19510 are separated by 500 nucleotides
HGI48_RS19500: HGI48_RS19500 - AraC family transcriptional regulator, at 4,354,766 to 4,355,809
_RS19500
HGI48_RS19505: HGI48_RS19505 - phosphotransferase, at 4,355,959 to 4,356,978
_RS19505
HGI48_RS19510: HGI48_RS19510 - ethanolamine permease, at 4,357,479 to 4,358,846
_RS19510
Position (kb) 4355
4356
4357 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4355.110 kb on + strand, within HGI48_RS19500 at 4355.110 kb on + strand, within HGI48_RS19500 at 4355.111 kb on - strand, within HGI48_RS19500 at 4355.209 kb on - strand, within HGI48_RS19500 at 4355.230 kb on + strand, within HGI48_RS19500 at 4355.230 kb on + strand, within HGI48_RS19500 at 4355.230 kb on + strand, within HGI48_RS19500 at 4355.231 kb on - strand, within HGI48_RS19500 at 4355.231 kb on - strand, within HGI48_RS19500 at 4355.231 kb on - strand, within HGI48_RS19500 at 4355.231 kb on - strand, within HGI48_RS19500 at 4355.231 kb on - strand, within HGI48_RS19500 at 4355.231 kb on - strand, within HGI48_RS19500 at 4355.465 kb on + strand, within HGI48_RS19500 at 4355.465 kb on + strand, within HGI48_RS19500 at 4355.465 kb on + strand, within HGI48_RS19500 at 4355.465 kb on + strand, within HGI48_RS19500 at 4355.466 kb on - strand, within HGI48_RS19500 at 4355.466 kb on - strand, within HGI48_RS19500 at 4355.511 kb on + strand, within HGI48_RS19500 at 4355.511 kb on + strand, within HGI48_RS19500 at 4355.511 kb on + strand, within HGI48_RS19500 at 4355.511 kb on + strand at 4355.511 kb on + strand, within HGI48_RS19500 at 4355.517 kb on - strand at 4355.554 kb on - strand, within HGI48_RS19500 at 4355.613 kb on + strand, within HGI48_RS19500 at 4355.613 kb on + strand, within HGI48_RS19500 at 4355.613 kb on + strand, within HGI48_RS19500 at 4355.613 kb on + strand, within HGI48_RS19500 at 4355.614 kb on - strand, within HGI48_RS19500 at 4355.672 kb on - strand, within HGI48_RS19500 at 4355.683 kb on + strand, within HGI48_RS19500 at 4355.684 kb on - strand, within HGI48_RS19500 at 4355.684 kb on - strand at 4355.684 kb on - strand, within HGI48_RS19500 at 4355.833 kb on + strand at 4355.881 kb on + strand at 4355.994 kb on - strand at 4356.168 kb on + strand, within HGI48_RS19505 at 4356.253 kb on - strand, within HGI48_RS19505 at 4356.253 kb on - strand, within HGI48_RS19505 at 4356.253 kb on - strand, within HGI48_RS19505 at 4356.253 kb on - strand, within HGI48_RS19505 at 4356.382 kb on + strand, within HGI48_RS19505 at 4356.901 kb on + strand at 4356.901 kb on + strand at 4356.902 kb on - strand at 4356.902 kb on - strand at 4356.936 kb on + strand at 4356.950 kb on + strand at 4356.993 kb on + strand at 4356.993 kb on + strand at 4356.993 kb on + strand at 4356.994 kb on - strand at 4356.994 kb on - strand at 4357.000 kb on + strand at 4357.001 kb on - strand at 4357.001 kb on - strand at 4357.058 kb on + strand at 4357.059 kb on - strand at 4357.059 kb on - strand at 4357.090 kb on + strand at 4357.091 kb on - strand at 4357.091 kb on - strand at 4357.106 kb on + strand at 4357.146 kb on - strand at 4357.220 kb on + strand at 4357.334 kb on + strand at 4357.335 kb on - strand at 4357.338 kb on - strand at 4357.351 kb on + strand at 4357.351 kb on + strand at 4357.352 kb on - strand at 4357.352 kb on - strand at 4357.354 kb on + strand at 4357.368 kb on + strand at 4357.371 kb on + strand at 4357.385 kb on + strand at 4357.385 kb on + strand at 4357.385 kb on + strand at 4357.385 kb on + strand at 4357.386 kb on - strand at 4357.421 kb on + strand at 4357.422 kb on - strand at 4357.425 kb on + strand at 4357.465 kb on + strand at 4357.492 kb on + strand at 4357.492 kb on + strand at 4357.493 kb on - strand at 4357.508 kb on + strand at 4357.557 kb on + strand at 4357.558 kb on - strand at 4357.558 kb on - strand at 4357.572 kb on + strand at 4357.572 kb on + strand at 4357.573 kb on - strand at 4357.573 kb on - strand at 4357.573 kb on - strand at 4357.573 kb on - strand at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.635 kb on + strand, within HGI48_RS19510 at 4357.636 kb on - strand at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.636 kb on - strand, within HGI48_RS19510 at 4357.637 kb on + strand, within HGI48_RS19510 at 4357.637 kb on + strand, within HGI48_RS19510 at 4357.637 kb on + strand, within HGI48_RS19510 at 4357.637 kb on + strand, within HGI48_RS19510 at 4357.638 kb on - strand, within HGI48_RS19510 at 4357.646 kb on + strand, within HGI48_RS19510 at 4357.864 kb on - strand, within HGI48_RS19510 at 4357.933 kb on + strand, within HGI48_RS19510 at 4357.951 kb on + strand, within HGI48_RS19510 at 4357.952 kb on - strand, within HGI48_RS19510
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,355,110 + HGI48_RS19500 0.33 -0.4 4,355,110 + HGI48_RS19500 0.33 -0.8 4,355,111 - HGI48_RS19500 0.33 -0.2 4,355,209 - HGI48_RS19500 0.42 +0.4 4,355,230 + HGI48_RS19500 0.44 -0.4 4,355,230 + HGI48_RS19500 0.44 -2.3 4,355,230 + HGI48_RS19500 0.44 -0.0 4,355,231 - HGI48_RS19500 0.45 +0.1 4,355,231 - HGI48_RS19500 0.45 -2.0 4,355,231 - HGI48_RS19500 0.45 +0.7 4,355,231 - HGI48_RS19500 0.45 +0.4 4,355,231 - HGI48_RS19500 0.45 +0.9 4,355,231 - HGI48_RS19500 0.45 -0.4 4,355,465 + HGI48_RS19500 0.67 +0.7 4,355,465 + HGI48_RS19500 0.67 +0.9 4,355,465 + HGI48_RS19500 0.67 -1.7 4,355,465 + HGI48_RS19500 0.67 -0.8 4,355,466 - HGI48_RS19500 0.67 -0.3 4,355,466 - HGI48_RS19500 0.67 -2.5 4,355,511 + HGI48_RS19500 0.71 +0.6 4,355,511 + HGI48_RS19500 0.71 +1.2 4,355,511 + HGI48_RS19500 0.71 +0.9 4,355,511 + +0.6 4,355,511 + HGI48_RS19500 0.71 -1.4 4,355,517 - +2.5 4,355,554 - HGI48_RS19500 0.75 -2.1 4,355,613 + HGI48_RS19500 0.81 -1.4 4,355,613 + HGI48_RS19500 0.81 -1.2 4,355,613 + HGI48_RS19500 0.81 -0.8 4,355,613 + HGI48_RS19500 0.81 -0.7 4,355,614 - HGI48_RS19500 0.81 -0.0 4,355,672 - HGI48_RS19500 0.87 -1.4 4,355,683 + HGI48_RS19500 0.88 +0.3 4,355,684 - HGI48_RS19500 0.88 -2.3 4,355,684 - +0.6 4,355,684 - HGI48_RS19500 0.88 -0.4 4,355,833 + -1.4 4,355,881 + -0.3 4,355,994 - +0.6 4,356,168 + HGI48_RS19505 0.20 -0.4 4,356,253 - HGI48_RS19505 0.29 +0.4 4,356,253 - HGI48_RS19505 0.29 +0.5 4,356,253 - HGI48_RS19505 0.29 -2.7 4,356,253 - HGI48_RS19505 0.29 -1.2 4,356,382 + HGI48_RS19505 0.41 -1.2 4,356,901 + -1.4 4,356,901 + +1.2 4,356,902 - +1.0 4,356,902 - -0.8 4,356,936 + -1.2 4,356,950 + -0.1 4,356,993 + -1.0 4,356,993 + +0.7 4,356,993 + -0.8 4,356,994 - -0.8 4,356,994 - -0.2 4,357,000 + -1.2 4,357,001 - +0.9 4,357,001 - +1.2 4,357,058 + +1.2 4,357,059 - -0.3 4,357,059 - +0.9 4,357,090 + +0.6 4,357,091 - -0.1 4,357,091 - +0.2 4,357,106 + -0.2 4,357,146 - -0.2 4,357,220 + +1.5 4,357,334 + +2.8 4,357,335 - +2.0 4,357,338 - +0.6 4,357,351 + -0.4 4,357,351 + -0.8 4,357,352 - +0.8 4,357,352 - +0.4 4,357,354 + +0.3 4,357,368 + +2.7 4,357,371 + -1.4 4,357,385 + +0.9 4,357,385 + -0.8 4,357,385 + +1.2 4,357,385 + +1.4 4,357,386 - -0.3 4,357,421 + -1.2 4,357,422 - -0.7 4,357,425 + -0.3 4,357,465 + -1.0 4,357,492 + -0.8 4,357,492 + -0.4 4,357,493 - -1.4 4,357,508 + -0.8 4,357,557 + -1.2 4,357,558 - -0.8 4,357,558 - +1.5 4,357,572 + -0.7 4,357,572 + -0.3 4,357,573 - +0.6 4,357,573 - -0.5 4,357,573 - -0.7 4,357,573 - -0.7 4,357,635 + HGI48_RS19510 0.11 +2.0 4,357,635 + HGI48_RS19510 0.11 +0.2 4,357,635 + HGI48_RS19510 0.11 +1.3 4,357,635 + HGI48_RS19510 0.11 -1.4 4,357,635 + HGI48_RS19510 0.11 -1.2 4,357,635 + HGI48_RS19510 0.11 +0.0 4,357,635 + HGI48_RS19510 0.11 +1.2 4,357,635 + HGI48_RS19510 0.11 -1.7 4,357,635 + HGI48_RS19510 0.11 +0.3 4,357,635 + HGI48_RS19510 0.11 +0.7 4,357,635 + HGI48_RS19510 0.11 +0.2 4,357,635 + HGI48_RS19510 0.11 +0.9 4,357,635 + HGI48_RS19510 0.11 -0.4 4,357,635 + HGI48_RS19510 0.11 -1.0 4,357,635 + HGI48_RS19510 0.11 +0.6 4,357,635 + HGI48_RS19510 0.11 +0.7 4,357,635 + HGI48_RS19510 0.11 -1.4 4,357,635 + HGI48_RS19510 0.11 +0.9 4,357,635 + HGI48_RS19510 0.11 +1.0 4,357,635 + HGI48_RS19510 0.11 +1.2 4,357,635 + HGI48_RS19510 0.11 -0.4 4,357,635 + HGI48_RS19510 0.11 +0.7 4,357,635 + HGI48_RS19510 0.11 -0.5 4,357,635 + HGI48_RS19510 0.11 -0.2 4,357,635 + HGI48_RS19510 0.11 +0.6 4,357,636 - -0.4 4,357,636 - HGI48_RS19510 0.11 -0.8 4,357,636 - HGI48_RS19510 0.11 +0.3 4,357,636 - HGI48_RS19510 0.11 +0.2 4,357,636 - HGI48_RS19510 0.11 +0.0 4,357,636 - HGI48_RS19510 0.11 -0.2 4,357,636 - -0.4 4,357,636 - HGI48_RS19510 0.11 -1.0 4,357,636 - HGI48_RS19510 0.11 +1.0 4,357,636 - HGI48_RS19510 0.11 -0.3 4,357,636 - HGI48_RS19510 0.11 +1.5 4,357,636 - HGI48_RS19510 0.11 -0.7 4,357,636 - HGI48_RS19510 0.11 -1.2 4,357,636 - HGI48_RS19510 0.11 +0.8 4,357,636 - HGI48_RS19510 0.11 +0.6 4,357,636 - HGI48_RS19510 0.11 -1.0 4,357,636 - HGI48_RS19510 0.11 +0.4 4,357,636 - HGI48_RS19510 0.11 -1.2 4,357,636 - HGI48_RS19510 0.11 +0.8 4,357,637 + HGI48_RS19510 0.12 +0.4 4,357,637 + HGI48_RS19510 0.12 -1.4 4,357,637 + HGI48_RS19510 0.12 -0.6 4,357,637 + HGI48_RS19510 0.12 -0.3 4,357,638 - HGI48_RS19510 0.12 +0.5 4,357,646 + HGI48_RS19510 0.12 -1.2 4,357,864 - HGI48_RS19510 0.28 +2.0 4,357,933 + HGI48_RS19510 0.33 -0.1 4,357,951 + HGI48_RS19510 0.35 -0.8 4,357,952 - HGI48_RS19510 0.35 -0.2
Or see this region's nucleotide sequence