Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13875

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,090,925	+		HGI48_RS13870	0.39	-1.1
3,090,925	+		HGI48_RS13870	0.39	+0.6
3,090,925	+		HGI48_RS13870	0.39	+0.0
3,090,926	-		HGI48_RS13870	0.40	-0.1
3,090,926	-		HGI48_RS13870	0.40	+1.5
3,090,926	-		HGI48_RS13870	0.40	+0.1
3,091,023	+		HGI48_RS13870	0.49	-0.9
3,091,023	+		HGI48_RS13870	0.49	-0.3
3,091,023	+		HGI48_RS13870	0.49	+0.4
3,091,023	+				-0.7
3,091,023	+		HGI48_RS13870	0.49	+2.2
3,091,028	+		HGI48_RS13870	0.50	-1.3
3,091,028	+		HGI48_RS13870	0.50	-1.7
3,091,028	+		HGI48_RS13870	0.50	-0.5
3,091,028	+		HGI48_RS13870	0.50	+0.1
3,091,029	-		HGI48_RS13870	0.50	+0.9
3,091,029	-		HGI48_RS13870	0.50	+0.6
3,091,055	+		HGI48_RS13870	0.52	+0.6
3,091,055	+		HGI48_RS13870	0.52	-0.5
3,091,055	+		HGI48_RS13870	0.52	+0.1
3,091,130	+		HGI48_RS13870	0.60	+0.7
3,091,130	+		HGI48_RS13870	0.60	-1.1
3,091,131	-		HGI48_RS13870	0.60	+0.6
3,091,131	-		HGI48_RS13870	0.60	-1.3
3,091,259	-		HGI48_RS13870	0.72	+0.4
3,091,259	-		HGI48_RS13870	0.72	-1.7
3,091,487	+				-0.3
3,091,505	+				-0.2
3,091,533	-				-0.1
3,091,543	+				+0.2
3,091,543	+				-0.5
3,091,544	-				-2.3
3,091,601	+				+0.1
3,091,602	-				-0.0
3,091,675	+				+0.2
3,091,730	+				+0.9
3,091,730	+				-0.1
3,091,744	-				-1.1
3,091,767	+				+0.5
3,091,768	-				-0.3
3,091,890	-				-0.4
3,091,890	-				-0.8
3,091,907	+				-2.1
3,091,908	-				+0.9
3,091,934	+				+0.7
3,091,935	-				+0.3
3,092,033	+		HGI48_RS13875	0.14	-0.3
3,092,033	+				+1.9
3,092,070	+		HGI48_RS13875	0.18	+0.7
3,092,178	+		HGI48_RS13875	0.30	-0.6
3,092,201	+		HGI48_RS13875	0.32	-1.1
3,092,202	-				+0.9
3,092,202	-		HGI48_RS13875	0.32	-0.4
3,092,202	-		HGI48_RS13875	0.32	-0.5
3,092,215	+		HGI48_RS13875	0.34	-1.1
3,092,216	-		HGI48_RS13875	0.34	-2.5
3,092,231	+		HGI48_RS13875	0.36	+1.6
3,092,232	-		HGI48_RS13875	0.36	+1.6
3,092,234	+		HGI48_RS13875	0.36	-0.3
3,092,235	-		HGI48_RS13875	0.36	-0.2
3,092,235	-				-0.7
3,092,290	-				+3.5
3,092,290	-		HGI48_RS13875	0.42	-0.7
3,092,313	+		HGI48_RS13875	0.45	-0.4
3,092,313	+				-0.7
3,092,330	-		HGI48_RS13875	0.47	-0.1
3,092,385	+		HGI48_RS13875	0.53	-1.1
3,092,386	-		HGI48_RS13875	0.53	-0.5
3,092,440	+		HGI48_RS13875	0.59	-1.0
3,092,471	+		HGI48_RS13875	0.62	+0.9
3,092,471	+		HGI48_RS13875	0.62	-0.4
3,092,472	-		HGI48_RS13875	0.62	-1.3
3,092,472	-		HGI48_RS13875	0.62	+0.1
3,092,472	-		HGI48_RS13875	0.62	-1.9
3,092,493	-		HGI48_RS13875	0.65	+0.1
3,092,506	+		HGI48_RS13875	0.66	-0.2
3,092,506	+		HGI48_RS13875	0.66	-2.7
3,092,506	+		HGI48_RS13875	0.66	-0.9
3,092,506	+		HGI48_RS13875	0.66	-0.4
3,092,507	-		HGI48_RS13875	0.66	+1.8
3,092,507	-		HGI48_RS13875	0.66	-1.1
3,092,507	-				+1.5
3,092,507	-		HGI48_RS13875	0.66	-0.3
3,092,518	+		HGI48_RS13875	0.67	-1.0
3,092,583	+		HGI48_RS13875	0.75	-0.8
3,092,583	+				-0.7
3,092,583	+		HGI48_RS13875	0.75	-2.8
3,092,583	+				-0.1
3,092,583	+		HGI48_RS13875	0.75	-0.4
3,092,584	-		HGI48_RS13875	0.75	-0.1
3,092,584	-		HGI48_RS13875	0.75	+0.3
3,092,584	-		HGI48_RS13875	0.75	-0.7
3,092,584	-		HGI48_RS13875	0.75	-1.1
3,092,586	+		HGI48_RS13875	0.75	+0.7
3,092,586	+		HGI48_RS13875	0.75	-0.5
3,092,587	-		HGI48_RS13875	0.75	-0.4
3,092,593	+		HGI48_RS13875	0.76	+0.3
3,092,594	-		HGI48_RS13875	0.76	-1.7
3,092,635	+		HGI48_RS13875	0.80	+1.9
3,092,723	+				-0.5
3,092,723	+				+1.5
3,092,724	-				-0.1
3,092,724	-				-0.9
3,092,731	+				-0.2
3,092,731	+				+0.9
3,092,731	+				-0.7
3,092,731	+				-0.2
3,092,731	+				-1.7
3,092,732	-				+0.3
3,092,732	-				+0.2
3,092,732	-				-0.8
3,092,926	-				-0.4
3,092,927	+				+0.9
3,092,927	+				-1.7
3,092,927	+				+0.2
3,092,927	+				-0.1
3,092,928	-				-0.1
3,092,937	+				-1.9
3,093,005	+		HGI48_RS13880	0.11	-1.3
3,093,005	+		HGI48_RS13880	0.11	-1.7
3,093,005	+		HGI48_RS13880	0.11	-0.9
3,093,006	-		HGI48_RS13880	0.12	+0.9
3,093,006	-		HGI48_RS13880	0.12	-0.2
3,093,012	+		HGI48_RS13880	0.12	+0.4
3,093,013	-				-0.1
3,093,013	-		HGI48_RS13880	0.12	+0.3
3,093,113	+		HGI48_RS13880	0.23	-1.4
3,093,156	+		HGI48_RS13880	0.28	+0.5
3,093,156	+		HGI48_RS13880	0.28	+0.6
3,093,172	-		HGI48_RS13880	0.30	+0.3
3,093,194	+		HGI48_RS13880	0.32	-1.0
3,093,194	+				+1.3
3,093,195	-		HGI48_RS13880	0.33	+0.3
3,093,195	-		HGI48_RS13880	0.33	-2.5
3,093,195	-				+0.9
3,093,195	-		HGI48_RS13880	0.33	-1.1
3,093,214	+		HGI48_RS13880	0.35	-1.1
3,093,214	+		HGI48_RS13880	0.35	-1.1
3,093,214	+		HGI48_RS13880	0.35	+0.5
3,093,214	+		HGI48_RS13880	0.35	-1.4
3,093,214	+		HGI48_RS13880	0.35	-0.2
3,093,215	-		HGI48_RS13880	0.35	+0.2
3,093,215	-		HGI48_RS13880	0.35	-1.9
3,093,215	-		HGI48_RS13880	0.35	-1.1
3,093,215	-		HGI48_RS13880	0.35	-1.1
3,093,216	+		HGI48_RS13880	0.35	-3.0
3,093,216	+		HGI48_RS13880	0.35	-0.7
3,093,216	+		HGI48_RS13880	0.35	-2.3
3,093,216	+		HGI48_RS13880	0.35	-0.7
3,093,216	+		HGI48_RS13880	0.35	-0.1
3,093,217	-		HGI48_RS13880	0.35	-1.4
3,093,217	-		HGI48_RS13880	0.35	+0.7
3,093,217	-		HGI48_RS13880	0.35	-1.1
3,093,217	-		HGI48_RS13880	0.35	-2.2
3,093,220	-				+0.3
3,093,220	-		HGI48_RS13880	0.35	-1.1
3,093,252	-		HGI48_RS13880	0.39	-0.2
3,093,255	+		HGI48_RS13880	0.39	-1.3
3,093,309	+		HGI48_RS13880	0.45	-0.8
3,093,309	+		HGI48_RS13880	0.45	-1.4
3,093,397	+		HGI48_RS13880	0.55	+1.0
3,093,397	+		HGI48_RS13880	0.55	-1.3
3,093,397	+		HGI48_RS13880	0.55	+0.3
3,093,398	-				-0.7
3,093,422	-		HGI48_RS13880	0.58	+0.9
3,093,462	-				-0.7
3,093,473	+		HGI48_RS13880	0.63	+1.8
3,093,473	+		HGI48_RS13880	0.63	+0.6
3,093,477	+				-0.7
3,093,478	-		HGI48_RS13880	0.64	-1.9
3,093,478	-		HGI48_RS13880	0.64	-2.8
3,093,478	-		HGI48_RS13880	0.64	-1.4
3,093,478	-		HGI48_RS13880	0.64	-0.5
3,093,480	-		HGI48_RS13880	0.64	-0.9
3,093,480	-		HGI48_RS13880	0.64	-1.5
3,093,480	-				-0.1
3,093,480	-		HGI48_RS13880	0.64	-0.2
3,093,480	-		HGI48_RS13880	0.64	+0.8
3,093,498	+		HGI48_RS13880	0.66	+0.5
3,093,509	+		HGI48_RS13880	0.67	-1.0
3,093,542	+		HGI48_RS13880	0.71	-1.6
3,093,542	+		HGI48_RS13880	0.71	-2.1
3,093,543	-		HGI48_RS13880	0.71	-0.1
3,093,543	-				-0.7
3,093,586	+		HGI48_RS13880	0.76	+0.9
3,093,641	+				+0.9
3,093,641	+		HGI48_RS13880	0.82	-0.7
3,093,641	+		HGI48_RS13880	0.82	+0.2
3,093,641	+		HGI48_RS13880	0.82	+0.5
3,093,641	+		HGI48_RS13880	0.82	+1.1
3,093,641	+		HGI48_RS13880	0.82	+0.5
3,093,641	+		HGI48_RS13880	0.82	-0.0
3,093,641	+				-0.7
3,093,641	+		HGI48_RS13880	0.82	+0.9
3,093,641	+		HGI48_RS13880	0.82	-1.0
3,093,642	-		HGI48_RS13880	0.82	-0.7
3,093,642	-				-0.1
3,093,642	-		HGI48_RS13880	0.82	+0.1
3,093,642	-		HGI48_RS13880	0.82	+0.5
3,093,642	-		HGI48_RS13880	0.82	+0.9
3,093,642	-		HGI48_RS13880	0.82	-0.7
3,093,718	+				+1.2
3,093,721	-				+0.4
3,093,768	-				-1.1
3,093,770	+				-2.5
3,093,770	+				+0.3
3,093,770	+				+2.2
3,093,770	+				-0.1
3,093,770	+				+0.9
3,093,770	+				-0.9
3,093,770	+				-0.2
3,093,770	+				+1.2
3,093,771	-				-0.1
3,093,771	-				+0.2
3,093,771	-				-2.1
3,093,774	+				-0.9
3,093,774	+				-0.1
3,093,774	+				-0.3
3,093,774	+				+0.8