Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13870

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,089,536	+				-1.7
3,089,536	+				+0.4
3,089,537	-				+0.3
3,089,537	-				+0.5
3,089,537	-				-0.1
3,089,544	+				+0.3
3,089,554	+				-1.4
3,089,555	-				-0.1
3,089,633	-				-0.1
3,089,658	+				-1.4
3,089,689	+				+0.3
3,089,689	+				+0.1
3,089,690	-				+0.5
3,089,706	+				+0.4
3,089,706	+				+2.6
3,089,706	+				-1.4
3,089,707	-				-1.4
3,089,707	-				+0.9
3,089,735	+		HGI48_RS13865	0.10	-2.3
3,089,735	+		HGI48_RS13865	0.10	-1.1
3,089,736	-		HGI48_RS13865	0.10	+0.3
3,089,747	+		HGI48_RS13865	0.12	+0.2
3,089,747	+		HGI48_RS13865	0.12	+0.5
3,089,747	+		HGI48_RS13865	0.12	-0.1
3,089,747	+		HGI48_RS13865	0.12	+1.2
3,089,795	-		HGI48_RS13865	0.18	-0.7
3,089,795	-		HGI48_RS13865	0.18	-1.5
3,089,855	-		HGI48_RS13865	0.26	+0.9
3,089,941	+		HGI48_RS13865	0.37	-0.1
3,089,942	-		HGI48_RS13865	0.37	+1.2
3,089,942	-				+0.3
3,089,942	-		HGI48_RS13865	0.37	+0.6
3,089,942	-		HGI48_RS13865	0.37	-1.1
3,089,952	+		HGI48_RS13865	0.39	-0.4
3,089,975	+		HGI48_RS13865	0.42	+1.3
3,089,975	+		HGI48_RS13865	0.42	-0.5
3,089,976	-		HGI48_RS13865	0.42	+1.6
3,089,990	-		HGI48_RS13865	0.44	-0.3
3,090,045	+		HGI48_RS13865	0.51	+0.3
3,090,046	-		HGI48_RS13865	0.51	+1.7
3,090,140	+		HGI48_RS13865	0.63	-1.9
3,090,140	+		HGI48_RS13865	0.63	+0.9
3,090,140	+		HGI48_RS13865	0.63	-0.0
3,090,164	-		HGI48_RS13865	0.66	+0.5
3,090,177	+		HGI48_RS13865	0.68	+0.3
3,090,177	+		HGI48_RS13865	0.68	-0.7
3,090,178	-		HGI48_RS13865	0.68	+0.6
3,090,178	-		HGI48_RS13865	0.68	+0.3
3,090,178	-		HGI48_RS13865	0.68	-0.5
3,090,181	+		HGI48_RS13865	0.68	+0.9
3,090,182	-		HGI48_RS13865	0.69	-0.3
3,090,202	+		HGI48_RS13865	0.71	-0.7
3,090,202	+				+0.9
3,090,202	+		HGI48_RS13865	0.71	-1.2
3,090,202	+		HGI48_RS13865	0.71	-0.4
3,090,203	-		HGI48_RS13865	0.71	+0.2
3,090,304	+		HGI48_RS13865	0.85	+1.2
3,090,304	+				+0.3
3,090,305	-		HGI48_RS13865	0.85	+0.9
3,090,307	+		HGI48_RS13865	0.85	+0.6
3,090,308	-		HGI48_RS13865	0.85	-0.9
3,090,308	-				+1.9
3,090,314	+		HGI48_RS13865	0.86	-3.1
3,090,317	+		HGI48_RS13865	0.86	+0.3
3,090,317	+		HGI48_RS13865	0.86	-1.7
3,090,318	-		HGI48_RS13865	0.86	-0.1
3,090,318	-		HGI48_RS13865	0.86	-1.7
3,090,342	+				+2.1
3,090,342	+		HGI48_RS13865	0.90	+0.2
3,090,400	+				-0.9
3,090,422	-				-0.4
3,090,425	+				-0.9
3,090,425	+				+0.6
3,090,425	+				-0.7
3,090,427	+				-0.7
3,090,427	+				-0.1
3,090,435	-				+0.9
3,090,444	+				+1.8
3,090,445	-				+0.9
3,090,484	-				-0.3
3,090,484	-				-0.3
3,090,498	+				+1.5
3,090,499	-				-0.7
3,090,591	-				+0.3
3,090,591	-				-1.1
3,090,623	+				+0.9
3,090,652	-		HGI48_RS13870	0.13	+1.5
3,090,701	+				+0.3
3,090,730	+		HGI48_RS13870	0.20	-1.7
3,090,730	+		HGI48_RS13870	0.20	-1.6
3,090,744	+		HGI48_RS13870	0.22	+1.9
3,090,747	+		HGI48_RS13870	0.22	-0.4
3,090,748	-		HGI48_RS13870	0.22	-2.3
3,090,754	+		HGI48_RS13870	0.23	-2.1
3,090,772	+		HGI48_RS13870	0.25	+0.4
3,090,780	+		HGI48_RS13870	0.25	-0.6
3,090,822	+		HGI48_RS13870	0.29	-1.1
3,090,823	-		HGI48_RS13870	0.30	+1.5
3,090,826	-		HGI48_RS13870	0.30	+0.2
3,090,871	+				-0.7
3,090,871	+		HGI48_RS13870	0.34	+0.1
3,090,925	+		HGI48_RS13870	0.39	-1.1
3,090,925	+		HGI48_RS13870	0.39	+0.6
3,090,925	+		HGI48_RS13870	0.39	+0.0
3,090,926	-		HGI48_RS13870	0.40	-0.1
3,090,926	-		HGI48_RS13870	0.40	+1.5
3,090,926	-		HGI48_RS13870	0.40	+0.1
3,091,023	+		HGI48_RS13870	0.49	-0.9
3,091,023	+		HGI48_RS13870	0.49	-0.3
3,091,023	+		HGI48_RS13870	0.49	+0.4
3,091,023	+				-0.7
3,091,023	+		HGI48_RS13870	0.49	+2.2
3,091,028	+		HGI48_RS13870	0.50	-1.3
3,091,028	+		HGI48_RS13870	0.50	-1.7
3,091,028	+		HGI48_RS13870	0.50	-0.5
3,091,028	+		HGI48_RS13870	0.50	+0.1
3,091,029	-		HGI48_RS13870	0.50	+0.9
3,091,029	-		HGI48_RS13870	0.50	+0.6
3,091,055	+		HGI48_RS13870	0.52	+0.6
3,091,055	+		HGI48_RS13870	0.52	-0.5
3,091,055	+		HGI48_RS13870	0.52	+0.1
3,091,130	+		HGI48_RS13870	0.60	+0.7
3,091,130	+		HGI48_RS13870	0.60	-1.1
3,091,131	-		HGI48_RS13870	0.60	+0.6
3,091,131	-		HGI48_RS13870	0.60	-1.3
3,091,259	-		HGI48_RS13870	0.72	+0.4
3,091,259	-		HGI48_RS13870	0.72	-1.7
3,091,487	+				-0.3
3,091,505	+				-0.2
3,091,533	-				-0.1
3,091,543	+				+0.2
3,091,543	+				-0.5
3,091,544	-				-2.3
3,091,601	+				+0.1
3,091,602	-				-0.0
3,091,675	+				+0.2
3,091,730	+				+0.9
3,091,730	+				-0.1
3,091,744	-				-1.1
3,091,767	+				+0.5
3,091,768	-				-0.3
3,091,890	-				-0.4
3,091,890	-				-0.8
3,091,907	+				-2.1
3,091,908	-				+0.9
3,091,934	+				+0.7
3,091,935	-				+0.3
3,092,033	+		HGI48_RS13875	0.14	-0.3
3,092,033	+				+1.9
3,092,070	+		HGI48_RS13875	0.18	+0.7
3,092,178	+		HGI48_RS13875	0.30	-0.6
3,092,201	+		HGI48_RS13875	0.32	-1.1
3,092,202	-				+0.9
3,092,202	-		HGI48_RS13875	0.32	-0.4
3,092,202	-		HGI48_RS13875	0.32	-0.5
3,092,215	+		HGI48_RS13875	0.34	-1.1
3,092,216	-		HGI48_RS13875	0.34	-2.5
3,092,231	+		HGI48_RS13875	0.36	+1.6
3,092,232	-		HGI48_RS13875	0.36	+1.6
3,092,234	+		HGI48_RS13875	0.36	-0.3
3,092,235	-		HGI48_RS13875	0.36	-0.2
3,092,235	-				-0.7
3,092,290	-				+3.5
3,092,290	-		HGI48_RS13875	0.42	-0.7
3,092,313	+		HGI48_RS13875	0.45	-0.4
3,092,313	+				-0.7
3,092,330	-		HGI48_RS13875	0.47	-0.1
3,092,385	+		HGI48_RS13875	0.53	-1.1
3,092,386	-		HGI48_RS13875	0.53	-0.5
3,092,440	+		HGI48_RS13875	0.59	-1.0
3,092,471	+		HGI48_RS13875	0.62	+0.9
3,092,471	+		HGI48_RS13875	0.62	-0.4
3,092,472	-		HGI48_RS13875	0.62	-1.3
3,092,472	-		HGI48_RS13875	0.62	+0.1
3,092,472	-		HGI48_RS13875	0.62	-1.9
3,092,493	-		HGI48_RS13875	0.65	+0.1
3,092,506	+		HGI48_RS13875	0.66	-0.2
3,092,506	+		HGI48_RS13875	0.66	-2.7
3,092,506	+		HGI48_RS13875	0.66	-0.9
3,092,506	+		HGI48_RS13875	0.66	-0.4
3,092,507	-		HGI48_RS13875	0.66	+1.8
3,092,507	-		HGI48_RS13875	0.66	-1.1
3,092,507	-				+1.5
3,092,507	-		HGI48_RS13875	0.66	-0.3
3,092,518	+		HGI48_RS13875	0.67	-1.0