Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13375

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,929,519	+		HGI48_RS13370	0.27	-0.5
2,929,541	+		HGI48_RS13370	0.29	-0.7
2,929,542	-		HGI48_RS13370	0.29	-0.1
2,929,564	+		HGI48_RS13370	0.31	+0.9
2,929,564	+		HGI48_RS13370	0.31	+1.9
2,929,565	-		HGI48_RS13370	0.31	-2.0
2,929,596	+		HGI48_RS13370	0.33	-0.7
2,929,596	+		HGI48_RS13370	0.33	-1.6
2,929,597	-		HGI48_RS13370	0.33	+1.5
2,929,653	+		HGI48_RS13370	0.38	+2.2
2,929,654	-		HGI48_RS13370	0.38	+0.6
2,929,654	-		HGI48_RS13370	0.38	-0.2
2,929,654	-		HGI48_RS13370	0.38	+0.1
2,929,673	+		HGI48_RS13370	0.40	-0.6
2,929,674	-		HGI48_RS13370	0.40	+1.1
2,929,674	-		HGI48_RS13370	0.40	+0.5
2,929,768	+		HGI48_RS13370	0.48	-0.3
2,929,768	+				-0.1
2,929,769	-				+3.0
2,929,769	-		HGI48_RS13370	0.48	-1.9
2,929,805	+		HGI48_RS13370	0.51	-0.1
2,929,854	+		HGI48_RS13370	0.55	+0.2
2,929,854	+		HGI48_RS13370	0.55	+0.1
2,929,854	+		HGI48_RS13370	0.55	+0.5
2,929,898	-		HGI48_RS13370	0.59	-0.4
2,929,951	+		HGI48_RS13370	0.63	+0.6
2,929,952	-		HGI48_RS13370	0.63	-1.7
2,929,952	-		HGI48_RS13370	0.63	-0.5
2,930,039	+		HGI48_RS13370	0.71	-0.7
2,930,039	+		HGI48_RS13370	0.71	+0.9
2,930,040	-		HGI48_RS13370	0.71	-0.4
2,930,040	-		HGI48_RS13370	0.71	+1.5
2,930,050	+		HGI48_RS13370	0.72	+0.1
2,930,051	-		HGI48_RS13370	0.72	-0.3
2,930,115	-		HGI48_RS13370	0.77	+0.8
2,930,178	-		HGI48_RS13370	0.82	-2.8
2,930,184	-		HGI48_RS13370	0.83	-0.5
2,930,213	+		HGI48_RS13370	0.85	+0.7
2,930,292	+				-0.3
2,930,292	+				+1.5
2,930,293	-				+0.9
2,930,293	-				-0.5
2,930,293	-				-0.2
2,930,293	-				-1.1
2,930,293	-				+0.9
2,930,293	-				+0.9
2,930,373	+				+0.2
2,930,373	+				-0.3
2,930,373	+				-1.6
2,930,373	+				-1.1
2,930,373	+				-1.4
2,930,373	+				-1.2
2,930,373	+				-0.2
2,930,373	+				+0.8
2,930,373	+				-1.1
2,930,373	+				-1.6
2,930,373	+				-0.1
2,930,374	-				-0.4
2,930,374	-				-0.7
2,930,374	-				+0.2
2,930,374	-				-0.7
2,930,374	-				-0.4
2,930,374	-				+0.7
2,930,374	-				-0.4
2,930,374	-				+0.6
2,930,374	-				-0.3
2,930,374	-				-1.9
2,930,374	-				-0.5
2,930,375	+				-1.4
2,930,384	+				-3.0
2,930,384	+				+1.2
2,930,405	-				-1.9
2,930,473	-				+0.5
2,930,628	+		HGI48_RS13375	0.14	+1.9
2,930,661	+		HGI48_RS13375	0.17	+0.3
2,930,701	-		HGI48_RS13375	0.20	+0.3
2,930,727	+		HGI48_RS13375	0.23	-0.2
2,930,751	+		HGI48_RS13375	0.25	-1.2
2,930,751	+		HGI48_RS13375	0.25	-2.7
2,930,752	-				+0.9
2,930,758	-		HGI48_RS13375	0.26	+0.4
2,930,800	+		HGI48_RS13375	0.29	-1.0
2,930,801	-		HGI48_RS13375	0.29	-0.9
2,930,801	-		HGI48_RS13375	0.29	-1.1
2,930,826	+		HGI48_RS13375	0.32	-1.8
2,930,826	+		HGI48_RS13375	0.32	-0.9
2,930,870	-		HGI48_RS13375	0.35	+0.9
2,930,871	+		HGI48_RS13375	0.36	-0.7
2,930,871	+		HGI48_RS13375	0.36	+0.2
2,930,871	+		HGI48_RS13375	0.36	+0.8
2,930,872	-		HGI48_RS13375	0.36	-1.1
2,930,872	-		HGI48_RS13375	0.36	+1.6
2,930,885	+		HGI48_RS13375	0.37	+1.7
2,930,885	+		HGI48_RS13375	0.37	+0.3
2,930,976	+		HGI48_RS13375	0.45	-2.3
2,931,014	-		HGI48_RS13375	0.48	-0.2
2,931,038	-		HGI48_RS13375	0.50	-0.1
2,931,038	-		HGI48_RS13375	0.50	+0.9
2,931,038	-		HGI48_RS13375	0.50	+0.6
2,931,041	+		HGI48_RS13375	0.51	+1.1
2,931,042	-		HGI48_RS13375	0.51	+0.3
2,931,042	-		HGI48_RS13375	0.51	-0.1
2,931,136	-		HGI48_RS13375	0.59	-0.1
2,931,166	+		HGI48_RS13375	0.62	-0.3
2,931,166	+		HGI48_RS13375	0.62	-1.1
2,931,167	-		HGI48_RS13375	0.62	-0.3
2,931,196	+				+1.6
2,931,196	+		HGI48_RS13375	0.64	-0.7
2,931,197	-		HGI48_RS13375	0.65	-0.9
2,931,197	-		HGI48_RS13375	0.65	+0.2
2,931,197	-		HGI48_RS13375	0.65	-0.3
2,931,201	+		HGI48_RS13375	0.65	+0.4
2,931,201	+		HGI48_RS13375	0.65	-0.1
2,931,202	-		HGI48_RS13375	0.65	+0.2
2,931,202	-		HGI48_RS13375	0.65	+0.2
2,931,313	+		HGI48_RS13375	0.75	+0.1
2,931,453	+				-0.1
2,931,453	+		HGI48_RS13375	0.87	-1.1
2,931,453	+		HGI48_RS13375	0.87	-1.4
2,931,507	+				-1.1
2,931,507	+				+1.6
2,931,508	-				+1.0
2,931,508	-				-1.1
2,931,508	-				-0.9
2,931,564	-				-0.1
2,931,575	+				-1.7
2,931,580	-				-1.1
2,931,580	-				-0.2
2,931,580	-				-0.9
2,931,580	-				+1.2
2,931,616	+				-2.4
2,931,616	+				-0.4
2,931,617	-				+0.6
2,931,617	-				+0.3
2,931,629	+				+0.5
2,931,629	+				-0.8
2,931,649	-				+0.2
2,931,652	-				-1.0
2,931,718	+				+0.3
2,931,718	+				-0.1
2,931,724	+				-0.1
2,931,724	+				+0.4
2,931,724	+				-1.9
2,931,725	-				-1.7
2,931,725	-				+0.9
2,931,725	-				+0.2
2,931,725	-				-1.0
2,931,725	-				+0.7
2,931,779	-				-0.1
2,931,814	+				-1.1
2,931,815	-				+1.7
2,931,815	-				+0.6
2,931,826	-				-0.9
2,931,876	+				-2.0
2,931,876	+				-0.1
2,931,877	-				+1.2
2,931,910	+				-1.0
2,931,910	+				+1.2
2,931,911	-				+1.3
2,931,911	-				-0.9
2,931,951	-				-1.7
2,931,951	-				-1.1
2,931,971	+				+0.3
2,932,075	+		HGI48_RS13380	0.10	-0.5
2,932,076	-				-0.1
2,932,082	-		HGI48_RS13380	0.10	+1.3
2,932,101	+		HGI48_RS13380	0.11	+0.7
2,932,101	+		HGI48_RS13380	0.11	-3.0
2,932,102	-				+1.6
2,932,123	+		HGI48_RS13380	0.12	-0.7
2,932,123	+		HGI48_RS13380	0.12	-0.3
2,932,124	-		HGI48_RS13380	0.12	+0.7
2,932,201	+		HGI48_RS13380	0.14	+0.2
2,932,201	+		HGI48_RS13380	0.14	-0.1
2,932,201	+		HGI48_RS13380	0.14	-0.2
2,932,201	+		HGI48_RS13380	0.14	-0.4
2,932,202	-		HGI48_RS13380	0.14	+0.1
2,932,228	+		HGI48_RS13380	0.15	+1.2
2,932,228	+		HGI48_RS13380	0.15	+0.0
2,932,396	+		HGI48_RS13380	0.20	-1.1
2,932,414	+		HGI48_RS13380	0.20	-0.1
2,932,414	+		HGI48_RS13380	0.20	-1.7
2,932,415	-		HGI48_RS13380	0.20	+0.5
2,932,415	-		HGI48_RS13380	0.20	+0.5
2,932,415	-		HGI48_RS13380	0.20	+1.7
2,932,415	-		HGI48_RS13380	0.20	+0.6
2,932,415	-		HGI48_RS13380	0.20	+1.2
2,932,435	+		HGI48_RS13380	0.21	-0.1
2,932,462	+		HGI48_RS13380	0.21	+0.3
2,932,462	+		HGI48_RS13380	0.21	-0.4
2,932,481	+		HGI48_RS13380	0.22	+0.7
2,932,481	+		HGI48_RS13380	0.22	+1.9
2,932,481	+		HGI48_RS13380	0.22	+1.5
2,932,481	+		HGI48_RS13380	0.22	+0.9
2,932,482	-		HGI48_RS13380	0.22	-1.1
2,932,483	+		HGI48_RS13380	0.22	+1.1
2,932,483	+		HGI48_RS13380	0.22	-2.3
2,932,483	+		HGI48_RS13380	0.22	-0.3
2,932,483	+		HGI48_RS13380	0.22	+0.9
2,932,484	-		HGI48_RS13380	0.22	-1.1
2,932,484	-		HGI48_RS13380	0.22	-0.4
2,932,484	-		HGI48_RS13380	0.22	+0.9
2,932,484	-		HGI48_RS13380	0.22	-0.3
2,932,484	-		HGI48_RS13380	0.22	-1.3
2,932,484	-				+0.9
2,932,576	+		HGI48_RS13380	0.25	+0.2
2,932,576	+		HGI48_RS13380	0.25	+0.6
2,932,577	-		HGI48_RS13380	0.25	+0.4