Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09005

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,938,017	-		HGI48_RS09000	0.14	-0.9
1,938,025	+		HGI48_RS09000	0.16	-0.2
1,938,025	+				+2.3
1,938,026	-		HGI48_RS09000	0.16	+0.9
1,938,026	-		HGI48_RS09000	0.16	+0.4
1,938,026	-		HGI48_RS09000	0.16	+0.3
1,938,104	+		HGI48_RS09000	0.31	-2.0
1,938,126	-				-0.7
1,938,163	+		HGI48_RS09000	0.42	+0.3
1,938,186	+				+1.9
1,938,186	+		HGI48_RS09000	0.46	+1.0
1,938,257	+		HGI48_RS09000	0.59	+1.2
1,938,258	-		HGI48_RS09000	0.60	-0.1
1,938,299	+		HGI48_RS09000	0.67	-0.5
1,938,299	+		HGI48_RS09000	0.67	-2.4
1,938,300	-				+0.3
1,938,300	-		HGI48_RS09000	0.67	-1.1
1,938,300	-		HGI48_RS09000	0.67	-1.2
1,938,300	-		HGI48_RS09000	0.67	-1.3
1,938,300	-		HGI48_RS09000	0.67	-0.4
1,938,300	-		HGI48_RS09000	0.67	-0.6
1,938,300	-		HGI48_RS09000	0.67	+0.0
1,938,300	-		HGI48_RS09000	0.67	-0.9
1,938,300	-		HGI48_RS09000	0.67	-2.1
1,938,300	-		HGI48_RS09000	0.67	-2.0
1,938,301	+		HGI48_RS09000	0.68	+1.0
1,938,301	+		HGI48_RS09000	0.68	+2.0
1,938,301	+		HGI48_RS09000	0.68	+1.2
1,938,301	+		HGI48_RS09000	0.68	-1.7
1,938,301	+		HGI48_RS09000	0.68	-0.5
1,938,301	+				+2.2
1,938,301	+		HGI48_RS09000	0.68	-0.7
1,938,301	+				+0.9
1,938,302	-		HGI48_RS09000	0.68	-0.3
1,938,302	-		HGI48_RS09000	0.68	-0.1
1,938,302	-		HGI48_RS09000	0.68	-0.6
1,938,302	-		HGI48_RS09000	0.68	-1.0
1,938,302	-		HGI48_RS09000	0.68	-0.4
1,938,397	+		HGI48_RS09000	0.86	+0.1
1,938,398	-		HGI48_RS09000	0.86	-1.0
1,938,398	-		HGI48_RS09000	0.86	-0.1
1,938,458	+				-0.4
1,938,459	-				-0.1
1,938,495	+				-1.5
1,938,496	-				-0.3
1,938,506	+				-0.3
1,938,506	+				+1.5
1,938,507	-				-0.5
1,938,507	-				-0.8
1,938,538	+				+0.7
1,938,558	+				-1.1
1,938,558	+				-1.1
1,938,558	+				+1.0
1,938,558	+				-0.3
1,938,559	-				-0.3
1,938,559	-				+1.0
1,938,560	+				-1.1
1,938,560	+				-0.5
1,938,561	-				-0.3
1,938,561	-				+1.1
1,938,561	-				+0.7
1,938,572	+				-0.7
1,938,577	+				-1.1
1,938,577	+				-0.3
1,938,577	+				+0.9
1,938,578	-				+0.9
1,938,607	+				-2.0
1,938,608	-				+0.1
1,938,615	+				-0.6
1,938,615	+				+2.2
1,938,615	+				-0.2
1,938,616	-				+0.3
1,938,616	-				-1.9
1,938,616	-				-2.5
1,938,621	+				+1.1
1,938,621	+				-1.0
1,938,622	-				+1.3
1,938,669	+				-1.7
1,938,687	+				-2.0
1,938,717	-				-1.0
1,938,717	-				-1.1
1,938,758	+				-0.9
1,938,761	-				-2.1
1,938,943	+				-1.5
1,938,944	-				-1.3
1,938,964	+				+0.1
1,938,964	+				+0.9
1,938,965	-				+0.2
1,939,007	+				+0.9
1,939,007	+				-0.1
1,939,008	-				+0.3
1,939,152	+				+0.7
1,939,153	-				+1.9
1,939,153	-				+0.3
1,939,175	-		HGI48_RS09005	0.11	+0.4
1,939,194	+		HGI48_RS09005	0.12	+0.6
1,939,195	-		HGI48_RS09005	0.12	+0.9
1,939,206	+		HGI48_RS09005	0.13	-0.7
1,939,206	+		HGI48_RS09005	0.13	-0.5
1,939,206	+		HGI48_RS09005	0.13	+0.4
1,939,207	-		HGI48_RS09005	0.13	+0.6
1,939,207	-		HGI48_RS09005	0.13	+1.4
1,939,212	+		HGI48_RS09005	0.13	-1.7
1,939,212	+		HGI48_RS09005	0.13	+0.4
1,939,213	-		HGI48_RS09005	0.14	+1.1
1,939,278	+				+1.4
1,939,278	+		HGI48_RS09005	0.18	-1.0
1,939,278	+		HGI48_RS09005	0.18	+1.4
1,939,358	+		HGI48_RS09005	0.23	-1.3
1,939,358	+				+0.9
1,939,383	-		HGI48_RS09005	0.24	-1.0
1,939,383	-		HGI48_RS09005	0.24	-0.4
1,939,383	-		HGI48_RS09005	0.24	-1.0
1,939,383	-		HGI48_RS09005	0.24	-0.5
1,939,383	-		HGI48_RS09005	0.24	-0.5
1,939,407	+		HGI48_RS09005	0.26	-0.5
1,939,510	-		HGI48_RS09005	0.33	+0.6
1,939,623	+				-0.7
1,939,623	+		HGI48_RS09005	0.40	+0.3
1,939,623	+		HGI48_RS09005	0.40	-0.4
1,939,627	-		HGI48_RS09005	0.40	-0.5
1,939,650	+		HGI48_RS09005	0.42	+0.3
1,939,686	+		HGI48_RS09005	0.44	-0.1
1,939,687	-		HGI48_RS09005	0.44	+0.1
1,939,813	-		HGI48_RS09005	0.52	+0.4
1,939,833	+		HGI48_RS09005	0.53	-0.1
1,939,833	+		HGI48_RS09005	0.53	-1.0
1,939,833	+		HGI48_RS09005	0.53	-0.1
1,939,833	+		HGI48_RS09005	0.53	-2.9
1,939,834	-		HGI48_RS09005	0.53	+1.1
1,939,834	-		HGI48_RS09005	0.53	-1.3
1,939,834	-		HGI48_RS09005	0.53	-0.8
1,939,834	-		HGI48_RS09005	0.53	+1.0
1,939,834	-		HGI48_RS09005	0.53	-0.4
1,939,834	-		HGI48_RS09005	0.53	-0.3
1,939,872	-				-0.1
1,939,872	-		HGI48_RS09005	0.56	-0.4
1,939,897	-		HGI48_RS09005	0.57	-1.1
1,939,897	-		HGI48_RS09005	0.57	+0.1
1,939,934	+				-0.7
1,939,948	-		HGI48_RS09005	0.61	+0.3
1,939,967	+		HGI48_RS09005	0.62	-0.7
1,939,968	-		HGI48_RS09005	0.62	+0.5
1,939,968	-		HGI48_RS09005	0.62	-1.5
1,939,990	-		HGI48_RS09005	0.63	-0.7
1,940,014	-		HGI48_RS09005	0.65	-0.1
1,940,019	+		HGI48_RS09005	0.65	-0.5
1,940,091	+		HGI48_RS09005	0.70	+0.0
1,940,091	+		HGI48_RS09005	0.70	-0.3
1,940,092	-		HGI48_RS09005	0.70	-1.1
1,940,093	+		HGI48_RS09005	0.70	-1.7
1,940,093	+		HGI48_RS09005	0.70	-2.0
1,940,094	-		HGI48_RS09005	0.70	-0.2
1,940,094	-		HGI48_RS09005	0.70	-0.5
1,940,094	-		HGI48_RS09005	0.70	+0.9
1,940,094	-				+0.3
1,940,094	-		HGI48_RS09005	0.70	+0.1
1,940,094	-		HGI48_RS09005	0.70	+0.4
1,940,094	-		HGI48_RS09005	0.70	-1.1
1,940,130	+		HGI48_RS09005	0.72	+0.7
1,940,130	+				+2.7
1,940,130	+		HGI48_RS09005	0.72	+0.5
1,940,130	+		HGI48_RS09005	0.72	-0.0
1,940,130	+		HGI48_RS09005	0.72	+0.0
1,940,131	-		HGI48_RS09005	0.72	+0.0
1,940,131	-		HGI48_RS09005	0.72	+0.9
1,940,131	-		HGI48_RS09005	0.72	+1.0
1,940,174	-		HGI48_RS09005	0.75	+0.4
1,940,174	-		HGI48_RS09005	0.75	+1.1
1,940,232	+		HGI48_RS09005	0.79	-1.1
1,940,280	+		HGI48_RS09005	0.82	+0.9
1,940,310	+		HGI48_RS09005	0.84	+0.4
1,940,317	-				-0.7
1,940,325	+		HGI48_RS09005	0.85	-1.1
1,940,326	-		HGI48_RS09005	0.85	+0.0
1,940,326	-		HGI48_RS09005	0.85	-1.7
1,940,400	+				+1.3
1,940,400	+		HGI48_RS09005	0.90	+0.4
1,940,401	-		HGI48_RS09005	0.90	+1.4
1,940,401	-		HGI48_RS09005	0.90	-1.0
1,940,455	-				-0.1
1,940,480	+				+2.7
1,940,480	+				+1.9
1,940,481	-				-0.3
1,940,481	-				-1.1
1,940,523	+				+1.9
1,940,559	+				+1.0
1,940,560	-				-0.1
1,940,627	+				-0.1
1,940,632	+				-0.4
1,940,632	+				-0.7
1,940,633	-				-1.0
1,940,633	-				+1.3
1,940,633	-				+0.7
1,940,633	-				+0.9
1,940,633	-				-2.0
1,940,633	-				-0.4
1,940,633	-				-0.3
1,940,643	+				+0.6
1,940,659	+				-0.6
1,940,659	+				+1.3
1,940,660	-				-0.7
1,940,660	-				-0.4
1,940,665	+				-0.7
1,940,665	+				+0.3
1,940,666	-				-1.1
1,940,666	-				-0.5
1,940,666	-				+0.9
1,940,691	+				+0.1
1,940,692	-				-0.7
1,940,692	-				+1.9
1,940,696	+				-1.3
1,940,696	+				+0.4
1,940,696	+				-2.1
1,940,696	+				-2.5
1,940,696	+				+0.7
1,940,696	+				+0.1
1,940,696	+				+0.5
1,940,696	+				-0.5
1,940,696	+				+2.1
1,940,697	-				+0.2
1,940,697	-				-0.9
1,940,697	-				+1.3
1,940,697	-				-0.5
1,940,697	-				-0.9
1,940,697	-				+0.4
1,940,697	-				-1.3
1,940,697	-				-1.5
1,940,697	-				-0.5
1,940,815	+		HGI48_RS09010	0.11	+0.0
1,940,815	+				-0.7
1,940,815	+		HGI48_RS09010	0.11	+0.2
1,940,815	+		HGI48_RS09010	0.11	-0.1
1,940,815	+		HGI48_RS09010	0.11	-1.5
1,940,815	+		HGI48_RS09010	0.11	+1.0
1,940,815	+		HGI48_RS09010	0.11	+0.4
1,940,816	-		HGI48_RS09010	0.11	-0.1
1,940,816	-		HGI48_RS09010	0.11	+0.3
1,940,816	-		HGI48_RS09010	0.11	-1.1
1,940,816	-		HGI48_RS09010	0.11	-0.1
1,940,816	-		HGI48_RS09010	0.11	-0.6
1,940,818	-		HGI48_RS09010	0.11	-0.5
1,940,818	-		HGI48_RS09010	0.11	-1.5
1,940,829	+				-0.7
1,940,830	-		HGI48_RS09010	0.12	+1.3
1,940,897	-		HGI48_RS09010	0.19	-1.1
1,940,897	-		HGI48_RS09010	0.19	-1.1
1,941,112	+				+1.9
1,941,112	+				+0.9
1,941,112	+		HGI48_RS09010	0.40	+0.7
1,941,112	+		HGI48_RS09010	0.40	+0.7
1,941,112	+		HGI48_RS09010	0.40	+0.0
1,941,112	+		HGI48_RS09010	0.40	+0.9
1,941,112	+				+1.9
1,941,113	-		HGI48_RS09010	0.41	+0.5
1,941,180	+		HGI48_RS09010	0.47	-0.1
1,941,180	+		HGI48_RS09010	0.47	+0.1
1,941,181	-				-0.7
1,941,181	-		HGI48_RS09010	0.47	-1.5
1,941,280	+		HGI48_RS09010	0.57	-0.4
1,941,281	-		HGI48_RS09010	0.57	-0.1
1,941,281	-		HGI48_RS09010	0.57	-0.5
1,941,281	-		HGI48_RS09010	0.57	-1.3
1,941,295	+		HGI48_RS09010	0.59	+1.7
1,941,296	-		HGI48_RS09010	0.59	-1.7
1,941,296	-		HGI48_RS09010	0.59	-0.6
1,941,296	-		HGI48_RS09010	0.59	+0.6
1,941,296	-		HGI48_RS09010	0.59	-0.1
1,941,296	-				-0.7
1,941,296	-		HGI48_RS09010	0.59	-1.5
1,941,304	+		HGI48_RS09010	0.60	-1.5
1,941,305	-		HGI48_RS09010	0.60	+0.5
1,941,305	-		HGI48_RS09010	0.60	+0.1
1,941,343	+		HGI48_RS09010	0.63	-0.0
1,941,473	-		HGI48_RS09010	0.76	+0.4
1,941,473	-		HGI48_RS09010	0.76	-0.7
1,941,473	-				+0.9
1,941,473	-				-0.7
1,941,473	-		HGI48_RS09010	0.76	-0.7
1,941,473	-				+0.3