Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08090

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,736,410	-		HGI48_RS08080	0.63	-2.3
1,736,432	+		HGI48_RS08080	0.67	-0.7
1,736,433	-		HGI48_RS08080	0.67	+0.3
1,736,501	+		HGI48_RS08080	0.76	+0.2
1,736,502	-		HGI48_RS08080	0.77	-0.5
1,736,502	-		HGI48_RS08080	0.77	+0.1
1,736,548	+		HGI48_RS08080	0.83	-1.5
1,736,548	+		HGI48_RS08080	0.83	-1.2
1,736,583	+		HGI48_RS08080	0.88	+0.4
1,736,743	+		HGI48_RS08085	0.21	+0.4
1,736,746	+				+4.4
1,736,746	+		HGI48_RS08085	0.22	-0.5
1,736,747	-				-0.7
1,736,747	-		HGI48_RS08085	0.22	-1.0
1,736,747	-		HGI48_RS08085	0.22	-0.2
1,736,747	-				-0.7
1,736,817	+		HGI48_RS08085	0.39	-0.7
1,736,818	-		HGI48_RS08085	0.39	-0.4
1,736,860	+		HGI48_RS08085	0.49	-0.2
1,736,861	-		HGI48_RS08085	0.50	-1.0
1,736,862	+		HGI48_RS08085	0.50	+1.3
1,736,863	-		HGI48_RS08085	0.50	-0.7
1,736,863	-		HGI48_RS08085	0.50	+0.1
1,737,015	+		HGI48_RS08085	0.87	+0.4
1,737,015	+				+0.3
1,737,015	+		HGI48_RS08085	0.87	+0.4
1,737,015	+		HGI48_RS08085	0.87	-1.0
1,737,015	+		HGI48_RS08085	0.87	-0.5
1,737,016	-		HGI48_RS08085	0.87	-1.7
1,737,016	-		HGI48_RS08085	0.87	+0.4
1,737,016	-		HGI48_RS08085	0.87	-1.0
1,737,016	-		HGI48_RS08085	0.87	-1.3
1,737,064	+				-0.2
1,737,064	+				-3.2
1,737,064	+				-0.5
1,737,064	+				+0.2
1,737,065	-				-0.3
1,737,065	-				-0.4
1,737,065	-				-0.5
1,737,160	+				+0.8
1,737,161	-				-1.2
1,737,173	-				+0.8
1,737,197	-				-0.7
1,737,197	-				+1.3
1,737,222	-				+1.7
1,737,222	-				-0.1
1,737,228	+				-0.7
1,737,228	+				-0.7
1,737,228	+				+0.8
1,737,228	+				-1.5
1,737,228	+				-0.7
1,737,229	-				-1.2
1,737,229	-				+0.4
1,737,229	-				+0.4
1,737,235	+				-1.0
1,737,235	+				+0.4
1,737,236	-				+0.4
1,737,236	-				+0.7
1,737,236	-				-0.5
1,737,236	-				-0.7
1,737,255	+				+0.0
1,737,414	+				-2.0
1,737,414	+				-0.7
1,737,446	-				+0.8
1,737,790	+		HGI48_RS08090	0.20	+1.2
1,737,791	-		HGI48_RS08090	0.20	-0.2
1,737,791	-		HGI48_RS08090	0.20	-0.5
1,738,202	+		HGI48_RS08090	0.39	+0.8
1,738,488	+		HGI48_RS08090	0.51	+0.8
1,738,588	+				-0.2
1,738,588	+		HGI48_RS08090	0.56	-2.1
1,738,588	+		HGI48_RS08090	0.56	+0.0
1,738,588	+		HGI48_RS08090	0.56	-0.2
1,738,589	-		HGI48_RS08090	0.56	+0.0
1,738,589	-		HGI48_RS08090	0.56	-2.2
1,738,589	-		HGI48_RS08090	0.56	-0.7
1,738,589	-		HGI48_RS08090	0.56	-0.5
1,738,589	-		HGI48_RS08090	0.56	+0.3
1,738,589	-		HGI48_RS08090	0.56	-2.0
1,738,769	+		HGI48_RS08090	0.64	+0.3
1,738,770	-		HGI48_RS08090	0.64	-0.7
1,738,770	-		HGI48_RS08090	0.64	+0.7
1,738,895	-		HGI48_RS08090	0.70	-0.3
1,738,895	-				-0.7
1,738,952	-		HGI48_RS08090	0.73	+1.4
1,738,993	+		HGI48_RS08090	0.74	+0.4
1,738,993	+				+0.8
1,738,993	+		HGI48_RS08090	0.74	-1.2
1,739,122	+		HGI48_RS08090	0.80	-0.7
1,739,123	-				-0.7
1,739,123	-		HGI48_RS08090	0.80	+0.5
1,739,123	-		HGI48_RS08090	0.80	-1.2
1,739,248	+		HGI48_RS08090	0.86	-1.7
1,739,249	-		HGI48_RS08090	0.86	-1.1
1,739,395	+				+0.4
1,739,540	+				+1.8
1,739,564	+				+2.4
1,739,564	+				-0.2
1,739,569	+				+1.1
1,739,569	+				+0.8
1,739,569	+				-2.3
1,739,569	+				-2.2
1,739,569	+				-0.3
1,739,570	-				-0.2
1,739,570	-				+0.5
1,739,570	-				+0.5
1,739,721	+				+0.6
1,739,754	+				-0.4
1,739,754	+				+0.5
1,739,754	+				-1.2
1,739,755	-				+0.2
1,739,755	-				+0.9
1,739,755	-				-0.2
1,739,760	-				+1.8
1,739,791	+				+0.6
1,739,791	+				-0.1
1,739,792	-				-1.2
1,739,792	-				-0.1
1,739,792	-				-2.2
1,739,807	+				+0.8
1,739,808	-				+0.0
1,739,808	-				-1.7
1,739,811	+				+0.1
1,739,812	-				-0.4
1,739,814	+				+0.5
1,739,815	-				-0.7
1,739,815	-				+0.8
1,739,854	+				-1.5
1,739,861	-				+1.3
1,739,861	-				-1.6
1,739,861	-				-0.7
1,739,887	+				+0.6
1,739,887	+				-1.0
1,739,963	-				+0.1
1,739,997	-				+0.8
1,740,053	-				+1.6
1,740,110	+				-1.6
1,740,110	+				+0.3
1,740,123	+				-0.5
1,740,124	-				+1.1
1,740,127	-				+0.4
1,740,133	-				-0.7
1,740,148	-				+1.4
1,740,165	+				+0.5
1,740,165	+				+0.8
1,740,166	-				-1.1
1,740,166	-				-1.2
1,740,166	-				-0.0
1,740,166	-				-1.2
1,740,166	-				-0.3
1,740,180	+				-1.0
1,740,181	-				+3.2
1,740,181	-				-0.4
1,740,195	+				-1.6
1,740,196	-				+0.5
1,740,269	+		HGI48_RS08095	0.11	-0.1
1,740,269	+		HGI48_RS08095	0.11	+0.0
1,740,269	+		HGI48_RS08095	0.11	-0.9
1,740,270	-		HGI48_RS08095	0.12	+0.2
1,740,270	-				+1.4
1,740,270	-		HGI48_RS08095	0.12	-0.5
1,740,271	+				+0.8
1,740,271	+		HGI48_RS08095	0.12	+0.1
1,740,271	+		HGI48_RS08095	0.12	-1.0
1,740,271	+		HGI48_RS08095	0.12	-1.4
1,740,272	-		HGI48_RS08095	0.12	-1.0
1,740,272	-		HGI48_RS08095	0.12	-0.6
1,740,272	-		HGI48_RS08095	0.12	-0.4
1,740,272	-		HGI48_RS08095	0.12	-0.0
1,740,272	-		HGI48_RS08095	0.12	-1.7
1,740,272	-		HGI48_RS08095	0.12	-0.9
1,740,272	-		HGI48_RS08095	0.12	-0.6
1,740,294	+		HGI48_RS08095	0.15	-2.0
1,740,334	-		HGI48_RS08095	0.20	-0.9
1,740,455	-				+1.8
1,740,488	+		HGI48_RS08095	0.39	-2.0
1,740,488	+		HGI48_RS08095	0.39	+0.1
1,740,526	+		HGI48_RS08095	0.44	-0.0
1,740,527	-		HGI48_RS08095	0.44	+0.6
1,740,527	-		HGI48_RS08095	0.44	-0.9
1,740,527	-		HGI48_RS08095	0.44	+0.8