Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07035

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,490,795	+				-2.1
1,490,801	+				-0.7
1,490,801	+				+0.3
1,490,836	+		HGI48_RS07025	0.24	-1.7
1,490,837	-		HGI48_RS07025	0.25	+1.1
1,490,845	+		HGI48_RS07025	0.30	-2.1
1,490,846	-		HGI48_RS07025	0.30	-1.3
1,490,856	+		HGI48_RS07025	0.36	+0.2
1,490,856	+		HGI48_RS07025	0.36	+1.5
1,490,879	+		HGI48_RS07025	0.50	+0.9
1,490,879	+		HGI48_RS07025	0.50	-0.6
1,490,880	-		HGI48_RS07025	0.51	+1.0
1,490,880	-		HGI48_RS07025	0.51	+0.9
1,490,880	-		HGI48_RS07025	0.51	+1.8
1,490,982	-				+0.6
1,491,002	+				-1.1
1,491,047	+		HGI48_RS07030	0.10	+0.5
1,491,049	+		HGI48_RS07030	0.10	+1.4
1,491,049	+		HGI48_RS07030	0.10	+2.4
1,491,049	+				+0.9
1,491,050	-		HGI48_RS07030	0.11	-0.7
1,491,050	-		HGI48_RS07030	0.11	+1.3
1,491,116	+				+2.9
1,491,116	+		HGI48_RS07030	0.18	+2.6
1,491,116	+		HGI48_RS07030	0.18	+1.1
1,491,116	+		HGI48_RS07030	0.18	+2.7
1,491,117	-		HGI48_RS07030	0.19	-1.9
1,491,180	+		HGI48_RS07030	0.26	-0.4
1,491,180	+		HGI48_RS07030	0.26	+1.4
1,491,223	+		HGI48_RS07030	0.31	+1.9
1,491,229	-		HGI48_RS07030	0.32	-1.0
1,491,231	+		HGI48_RS07030	0.32	+2.8
1,491,247	+		HGI48_RS07030	0.34	+1.8
1,491,398	-				-0.7
1,491,401	-		HGI48_RS07030	0.53	-0.4
1,491,447	+		HGI48_RS07030	0.58	-0.4
1,491,485	-		HGI48_RS07030	0.63	-1.0
1,491,487	+		HGI48_RS07030	0.63	+0.8
1,491,529	-		HGI48_RS07030	0.68	+0.2
1,491,560	-		HGI48_RS07030	0.72	+0.6
1,491,581	+		HGI48_RS07030	0.75	+1.8
1,491,607	+		HGI48_RS07030	0.78	+0.4
1,491,688	+				+0.3
1,491,695	-		HGI48_RS07030	0.88	-1.7
1,491,716	+				+1.6
1,491,716	+				+0.9
1,491,716	+				+2.5
1,491,716	+				+1.5
1,491,717	-				+1.9
1,491,718	+				+0.1
1,491,760	+				+1.2
1,491,761	-				+1.3
1,491,764	+				-0.1
1,491,764	+				+0.4
1,491,764	+				+1.8
1,491,764	+				+1.6
1,491,804	-				+0.2
1,491,830	+				-0.7
1,491,855	+				-0.7
1,491,863	+				+1.5
1,491,863	+				+0.2
1,491,864	-				-0.1
1,491,864	-				+0.6
1,491,865	+				+1.2
1,491,865	+				-1.5
1,491,865	+				-0.3
1,491,866	-				+3.2
1,491,866	-				+1.6
1,491,921	+		HGI48_RS07035	0.11	-0.8
1,491,925	+		HGI48_RS07035	0.12	-0.8
1,491,925	+		HGI48_RS07035	0.12	-1.4
1,491,926	-		HGI48_RS07035	0.12	+0.5
1,491,956	+		HGI48_RS07035	0.14	+0.4
1,491,957	-		HGI48_RS07035	0.14	-0.7
1,491,957	-		HGI48_RS07035	0.14	-0.9
1,491,957	-		HGI48_RS07035	0.14	+0.3
1,491,960	-		HGI48_RS07035	0.14	-1.1
1,492,029	-		HGI48_RS07035	0.20	-1.1
1,492,029	-		HGI48_RS07035	0.20	-0.9
1,492,073	+		HGI48_RS07035	0.24	+0.6
1,492,073	+		HGI48_RS07035	0.24	-1.4
1,492,074	-		HGI48_RS07035	0.24	+0.9
1,492,074	-		HGI48_RS07035	0.24	-0.8
1,492,074	-		HGI48_RS07035	0.24	+0.5
1,492,104	+		HGI48_RS07035	0.26	-0.7
1,492,104	+		HGI48_RS07035	0.26	-1.1
1,492,142	+		HGI48_RS07035	0.30	+0.2
1,492,143	-		HGI48_RS07035	0.30	-1.1
1,492,143	-		HGI48_RS07035	0.30	-0.8
1,492,158	+		HGI48_RS07035	0.31	-0.2
1,492,158	+		HGI48_RS07035	0.31	-0.9
1,492,158	+				+1.6
1,492,159	-		HGI48_RS07035	0.31	-1.1
1,492,242	+		HGI48_RS07035	0.38	-0.7
1,492,243	-		HGI48_RS07035	0.38	-0.3
1,492,249	-		HGI48_RS07035	0.39	-0.7
1,492,255	-		HGI48_RS07035	0.39	-1.7
1,492,339	+		HGI48_RS07035	0.46	-1.2
1,492,339	+		HGI48_RS07035	0.46	-0.4
1,492,340	-		HGI48_RS07035	0.46	+0.5
1,492,340	-		HGI48_RS07035	0.46	-0.7
1,492,340	-		HGI48_RS07035	0.46	+1.1
1,492,365	-		HGI48_RS07035	0.48	+0.1
1,492,413	+		HGI48_RS07035	0.52	+0.3
1,492,417	+		HGI48_RS07035	0.53	-1.9
1,492,417	+		HGI48_RS07035	0.53	+1.4
1,492,418	-		HGI48_RS07035	0.53	-1.1
1,492,418	-		HGI48_RS07035	0.53	+0.4
1,492,418	-		HGI48_RS07035	0.53	+0.6
1,492,455	-		HGI48_RS07035	0.56	-0.5
1,492,455	-		HGI48_RS07035	0.56	-0.2
1,492,469	+				+0.3
1,492,502	-		HGI48_RS07035	0.60	+0.6
1,492,503	+		HGI48_RS07035	0.60	-1.9
1,492,503	+		HGI48_RS07035	0.60	-1.9
1,492,503	+		HGI48_RS07035	0.60	-0.2
1,492,504	-		HGI48_RS07035	0.60	-0.5
1,492,504	-		HGI48_RS07035	0.60	-0.4
1,492,514	+		HGI48_RS07035	0.61	+0.6
1,492,596	+		HGI48_RS07035	0.68	-1.9
1,492,596	+		HGI48_RS07035	0.68	+0.9
1,492,597	-		HGI48_RS07035	0.68	-1.3
1,492,618	+				+1.6
1,492,619	-		HGI48_RS07035	0.70	-0.7
1,492,620	+		HGI48_RS07035	0.70	-0.3
1,492,639	-		HGI48_RS07035	0.71	-0.9
1,492,674	-		HGI48_RS07035	0.74	-0.7
1,492,678	+		HGI48_RS07035	0.74	+0.5
1,492,678	+		HGI48_RS07035	0.74	-0.0
1,492,679	-		HGI48_RS07035	0.75	-0.4
1,492,744	+		HGI48_RS07035	0.80	+0.1
1,492,744	+		HGI48_RS07035	0.80	+0.6
1,492,744	+		HGI48_RS07035	0.80	-0.4
1,492,744	+		HGI48_RS07035	0.80	+1.4
1,492,744	+				-0.7
1,492,745	-		HGI48_RS07035	0.80	+0.5
1,492,745	-		HGI48_RS07035	0.80	+0.4
1,492,745	-		HGI48_RS07035	0.80	-1.1
1,492,745	-		HGI48_RS07035	0.80	+0.2
1,492,745	-		HGI48_RS07035	0.80	+0.5
1,492,764	+		HGI48_RS07035	0.82	+0.8
1,492,765	-		HGI48_RS07035	0.82	+0.2
1,492,766	+		HGI48_RS07035	0.82	+1.1
1,492,832	+		HGI48_RS07035	0.87	+0.4
1,492,848	+		HGI48_RS07035	0.89	+2.0
1,492,940	+				+1.0
1,492,941	-				+0.3
1,492,984	+				+0.9
1,493,118	+		HGI48_RS07040	0.19	+0.9
1,493,119	-		HGI48_RS07040	0.19	-0.8
1,493,139	+		HGI48_RS07040	0.22	+1.9
1,493,140	-		HGI48_RS07040	0.22	-1.1
1,493,140	-		HGI48_RS07040	0.22	-1.1
1,493,153	-		HGI48_RS07040	0.24	-1.7
1,493,153	-		HGI48_RS07040	0.24	+0.9
1,493,161	+		HGI48_RS07040	0.26	-0.5
1,493,162	-		HGI48_RS07040	0.26	+0.9
1,493,186	+		HGI48_RS07040	0.29	-1.9
1,493,187	-				+1.6
1,493,189	-		HGI48_RS07040	0.30	-0.1
1,493,240	+		HGI48_RS07040	0.37	-0.8
1,493,241	-		HGI48_RS07040	0.37	+0.5
1,493,241	-		HGI48_RS07040	0.37	+1.2
1,493,244	-				-0.7
1,493,244	-		HGI48_RS07040	0.38	+0.4
1,493,254	+		HGI48_RS07040	0.39	+0.5
1,493,254	+		HGI48_RS07040	0.39	-1.7
1,493,255	-				-0.1
1,493,255	-		HGI48_RS07040	0.39	+0.1
1,493,312	-		HGI48_RS07040	0.47	-0.3
1,493,338	+		HGI48_RS07040	0.51	+0.1
1,493,339	-		HGI48_RS07040	0.51	-0.5
1,493,390	+		HGI48_RS07040	0.59	-0.1
1,493,391	-		HGI48_RS07040	0.59	-1.3
1,493,400	+		HGI48_RS07040	0.60	-0.1
1,493,401	-				+1.9
1,493,447	+		HGI48_RS07040	0.67	-0.1
1,493,447	+		HGI48_RS07040	0.67	-0.2
1,493,447	+		HGI48_RS07040	0.67	-1.4
1,493,448	-		HGI48_RS07040	0.67	-1.7
1,493,448	-		HGI48_RS07040	0.67	-1.1
1,493,449	+		HGI48_RS07040	0.67	-1.5
1,493,450	-		HGI48_RS07040	0.67	+1.5
1,493,473	+		HGI48_RS07040	0.71	+1.0
1,493,473	+		HGI48_RS07040	0.71	-1.9
1,493,513	+		HGI48_RS07040	0.77	-0.6
1,493,514	-		HGI48_RS07040	0.77	-1.4
1,493,514	-				-0.7
1,493,514	-		HGI48_RS07040	0.77	-0.7
1,493,514	-		HGI48_RS07040	0.77	-1.1
1,493,546	-		HGI48_RS07040	0.81	-0.7
1,493,588	-		HGI48_RS07040	0.87	-0.2
1,493,603	-				-0.1
1,493,605	+		HGI48_RS07040	0.90	-1.4
1,493,605	+		HGI48_RS07040	0.90	+1.4
1,493,606	-				-1.0
1,493,695	+				+0.2
1,493,696	-				-0.7
1,493,696	-				+0.9
1,493,712	-				-1.0
1,493,729	+				-0.2
1,493,730	-				+0.1
1,493,734	+				+0.1
1,493,738	+				+0.7
1,493,739	-				-0.1
1,493,807	+				+0.6
1,493,808	-				-0.6
1,493,925	+				-0.7
1,493,925	+				+0.2
1,493,925	+				+1.2
1,493,925	+				+1.1
1,493,925	+				+0.6
1,493,926	-				+1.0
1,493,926	-				-1.7
1,493,926	-				-0.1