Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06990

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,482,502	+		HGI48_RS06985	0.45	+0.1
1,482,502	+		HGI48_RS06985	0.45	+0.2
1,482,502	+		HGI48_RS06985	0.45	-0.4
1,482,503	-		HGI48_RS06985	0.45	-0.1
1,482,503	-		HGI48_RS06985	0.45	-1.3
1,482,503	-		HGI48_RS06985	0.45	+0.4
1,482,503	-		HGI48_RS06985	0.45	-2.3
1,482,515	+		HGI48_RS06985	0.46	-0.6
1,482,516	-		HGI48_RS06985	0.46	+0.1
1,482,554	-		HGI48_RS06985	0.49	+0.9
1,482,601	+				-0.7
1,482,602	-		HGI48_RS06985	0.53	-1.9
1,482,609	-		HGI48_RS06985	0.53	-1.9
1,482,634	-		HGI48_RS06985	0.55	-0.7
1,482,685	+		HGI48_RS06985	0.59	+0.0
1,482,749	+		HGI48_RS06985	0.64	-0.1
1,482,750	-		HGI48_RS06985	0.64	-0.2
1,482,750	-		HGI48_RS06985	0.64	+0.1
1,482,776	+				+1.3
1,482,776	+				+0.9
1,482,809	+		HGI48_RS06985	0.69	+0.4
1,482,810	-		HGI48_RS06985	0.69	-0.1
1,482,886	+		HGI48_RS06985	0.75	+0.5
1,482,887	-		HGI48_RS06985	0.75	+0.2
1,482,888	+		HGI48_RS06985	0.75	+0.3
1,482,894	-		HGI48_RS06985	0.76	-1.6
1,482,975	-		HGI48_RS06985	0.82	+1.1
1,482,975	-		HGI48_RS06985	0.82	-0.7
1,482,986	+				-0.7
1,483,014	-				-0.1
1,483,035	+		HGI48_RS06985	0.87	-0.7
1,483,036	-		HGI48_RS06985	0.87	-0.6
1,483,036	-		HGI48_RS06985	0.87	+1.1
1,483,075	+				+0.2
1,483,076	-				-0.9
1,483,080	+				+1.9
1,483,097	+				-0.8
1,483,201	-				-0.1
1,483,208	-				-0.9
1,483,241	-				+0.5
1,483,293	+				+0.8
1,483,329	-				+1.8
1,483,370	+				+0.9
1,483,372	+				+0.9
1,483,408	+				-1.1
1,483,426	-				+1.5
1,483,442	+				+0.9
1,483,504	+				+0.0
1,483,504	+				+1.0
1,483,504	+				+1.1
1,483,585	+				-1.4
1,483,586	-				-2.4
1,483,724	-		HGI48_RS06990	0.25	-0.5
1,483,803	+		HGI48_RS06990	0.34	+0.7
1,483,942	+		HGI48_RS06990	0.50	+0.1
1,483,943	-		HGI48_RS06990	0.50	-2.2
1,483,989	+		HGI48_RS06990	0.55	+1.6
1,483,990	-		HGI48_RS06990	0.55	-2.7
1,484,068	-		HGI48_RS06990	0.64	-0.5
1,484,068	-		HGI48_RS06990	0.64	+0.4
1,484,146	-		HGI48_RS06990	0.72	-1.3
1,484,150	-		HGI48_RS06990	0.73	-0.2
1,484,150	-		HGI48_RS06990	0.73	-0.1
1,484,150	-		HGI48_RS06990	0.73	+1.1
1,484,156	+		HGI48_RS06990	0.73	-0.3
1,484,156	+		HGI48_RS06990	0.73	-0.7
1,484,157	-		HGI48_RS06990	0.74	-0.0
1,484,157	-		HGI48_RS06990	0.74	-1.4
1,484,157	-		HGI48_RS06990	0.74	+1.0
1,484,157	-		HGI48_RS06990	0.74	-0.2
1,484,157	-		HGI48_RS06990	0.74	+0.3
1,484,159	+		HGI48_RS06990	0.74	-0.1
1,484,159	+		HGI48_RS06990	0.74	+1.6
1,484,159	+		HGI48_RS06990	0.74	+0.6
1,484,159	+		HGI48_RS06990	0.74	+0.7
1,484,160	-		HGI48_RS06990	0.74	-0.3
1,484,206	+		HGI48_RS06990	0.79	-1.5
1,484,206	+		HGI48_RS06990	0.79	-0.7
1,484,207	-		HGI48_RS06990	0.79	+0.4
1,484,266	+		HGI48_RS06990	0.86	+0.9
1,484,266	+		HGI48_RS06990	0.86	-1.4
1,484,267	-		HGI48_RS06990	0.86	+0.5
1,484,267	-		HGI48_RS06990	0.86	+1.8
1,484,268	+		HGI48_RS06990	0.86	-1.4
1,484,306	-				+1.6
1,484,311	+				-1.1
1,484,519	+		HGI48_RS06995	0.11	-0.7
1,484,519	+		HGI48_RS06995	0.11	+0.7
1,484,519	+		HGI48_RS06995	0.11	+0.2
1,484,519	+		HGI48_RS06995	0.11	-1.4
1,484,520	-		HGI48_RS06995	0.11	+1.5
1,484,520	-		HGI48_RS06995	0.11	-0.1
1,484,520	-		HGI48_RS06995	0.11	-0.1
1,484,617	-		HGI48_RS06995	0.20	+0.9
1,484,629	-		HGI48_RS06995	0.21	+1.1
1,484,629	-		HGI48_RS06995	0.21	-0.3
1,484,708	-		HGI48_RS06995	0.28	-1.4
1,484,758	-		HGI48_RS06995	0.32	+0.2
1,484,800	+		HGI48_RS06995	0.36	-0.5
1,484,801	-		HGI48_RS06995	0.36	+0.4
1,484,806	+		HGI48_RS06995	0.37	+2.1
1,484,807	-		HGI48_RS06995	0.37	-0.7
1,484,807	-		HGI48_RS06995	0.37	+0.1
1,484,807	-		HGI48_RS06995	0.37	-0.3
1,484,807	-		HGI48_RS06995	0.37	+0.0
1,484,830	+		HGI48_RS06995	0.39	+0.1
1,485,026	-		HGI48_RS06995	0.56	+0.4
1,485,026	-				+0.9
1,485,026	-		HGI48_RS06995	0.56	-2.2
1,485,067	+		HGI48_RS06995	0.60	-0.7
1,485,067	+		HGI48_RS06995	0.60	-1.1
1,485,105	+		HGI48_RS06995	0.63	-0.7
1,485,105	+		HGI48_RS06995	0.63	+0.3
1,485,105	+		HGI48_RS06995	0.63	-1.4
1,485,106	-		HGI48_RS06995	0.63	-1.3
1,485,107	+		HGI48_RS06995	0.64	-2.5
1,485,108	-				-0.7
1,485,108	-		HGI48_RS06995	0.64	-0.6
1,485,108	-		HGI48_RS06995	0.64	-0.3
1,485,108	-		HGI48_RS06995	0.64	-2.5
1,485,108	-		HGI48_RS06995	0.64	-1.2
1,485,134	-		HGI48_RS06995	0.66	-0.9
1,485,192	+		HGI48_RS06995	0.71	+1.2
1,485,193	-		HGI48_RS06995	0.71	+0.1
1,485,193	-		HGI48_RS06995	0.71	-0.5
1,485,193	-		HGI48_RS06995	0.71	+1.4
1,485,236	+		HGI48_RS06995	0.75	-0.9
1,485,236	+		HGI48_RS06995	0.75	-0.3
1,485,237	-		HGI48_RS06995	0.75	-0.9
1,485,237	-		HGI48_RS06995	0.75	+0.4
1,485,237	-		HGI48_RS06995	0.75	-1.4
1,485,308	+		HGI48_RS06995	0.82	-0.1
1,485,308	+		HGI48_RS06995	0.82	-0.1
1,485,308	+		HGI48_RS06995	0.82	+0.5
1,485,308	+		HGI48_RS06995	0.82	-0.9
1,485,309	-				+1.3
1,485,309	-		HGI48_RS06995	0.82	+1.1
1,485,310	+		HGI48_RS06995	0.82	+0.2
1,485,310	+		HGI48_RS06995	0.82	-2.3
1,485,310	+		HGI48_RS06995	0.82	-1.4
1,485,310	+		HGI48_RS06995	0.82	-0.3
1,485,310	+		HGI48_RS06995	0.82	-2.5
1,485,311	-		HGI48_RS06995	0.82	-1.7
1,485,311	-		HGI48_RS06995	0.82	-1.1
1,485,323	+		HGI48_RS06995	0.83	-0.4
1,485,324	-		HGI48_RS06995	0.83	+1.0
1,485,324	-		HGI48_RS06995	0.83	-0.7
1,485,324	-		HGI48_RS06995	0.83	-0.8