Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS06155 and HGI48_RS06160 are separated by 231 nucleotides HGI48_RS06160 and HGI48_RS06165 are separated by 547 nucleotides HGI48_RS06165 and HGI48_RS06170 are separated by 61 nucleotides HGI48_RS06170 and HGI48_RS06175 are separated by 209 nucleotides
HGI48_RS06155: HGI48_RS06155 - ArsC family reductase, at 1,310,947 to 1,311,330
_RS06155
HGI48_RS06160: HGI48_RS06160 - protein YpfM, at 1,311,562 to 1,311,621
_RS06160
HGI48_RS06165: HGI48_RS06165 - transcription antiterminator/RNA stability regulator CspE, at 1,312,169 to 1,312,378
_RS06165
HGI48_RS06170: HGI48_RS06170 - fluoride efflux transporter CrcB, at 1,312,440 to 1,312,823
_RS06170
HGI48_RS06175: HGI48_RS06175 - deaminated glutathione amidase, at 1,313,033 to 1,313,821
_RS06175
Position (kb) 1312
1313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1311.376 kb on - strand at 1311.383 kb on - strand at 1311.383 kb on - strand at 1311.517 kb on + strand at 1311.517 kb on + strand at 1311.518 kb on - strand at 1311.519 kb on + strand at 1311.520 kb on - strand at 1311.523 kb on - strand at 1311.555 kb on + strand at 1311.616 kb on - strand at 1311.619 kb on + strand at 1311.620 kb on - strand at 1311.636 kb on - strand at 1311.636 kb on - strand at 1311.640 kb on + strand at 1311.640 kb on + strand at 1311.641 kb on - strand at 1311.664 kb on + strand at 1311.665 kb on - strand at 1311.688 kb on - strand at 1311.690 kb on + strand at 1311.798 kb on + strand at 1311.955 kb on + strand at 1312.004 kb on + strand at 1312.008 kb on - strand at 1312.016 kb on - strand at 1312.058 kb on + strand at 1312.180 kb on + strand at 1312.181 kb on - strand at 1312.181 kb on - strand at 1312.254 kb on + strand, within HGI48_RS06165 at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.420 kb on + strand at 1312.452 kb on + strand at 1312.656 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.664 kb on - strand at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.683 kb on - strand at 1312.683 kb on - strand, within HGI48_RS06170 at 1312.742 kb on + strand, within HGI48_RS06170 at 1312.742 kb on + strand, within HGI48_RS06170 at 1312.743 kb on - strand, within HGI48_RS06170 at 1312.746 kb on - strand, within HGI48_RS06170 at 1312.809 kb on + strand at 1312.809 kb on + strand at 1312.814 kb on + strand at 1312.815 kb on - strand at 1312.817 kb on + strand at 1312.817 kb on + strand at 1312.817 kb on + strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.945 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.987 kb on + strand at 1313.003 kb on - strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.014 kb on - strand at 1313.014 kb on - strand at 1313.014 kb on - strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.018 kb on - strand at 1313.018 kb on - strand at 1313.018 kb on - strand at 1313.070 kb on + strand at 1313.097 kb on + strand at 1313.097 kb on + strand at 1313.103 kb on + strand at 1313.173 kb on + strand at 1313.173 kb on + strand, within HGI48_RS06175 at 1313.174 kb on - strand, within HGI48_RS06175 at 1313.275 kb on + strand at 1313.285 kb on - strand, within HGI48_RS06175 at 1313.311 kb on + strand, within HGI48_RS06175 at 1313.311 kb on + strand at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.354 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand at 1313.372 kb on + strand at 1313.373 kb on - strand, within HGI48_RS06175
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,311,376 - +0.1 1,311,383 - +0.7 1,311,383 - -0.1 1,311,517 + -0.3 1,311,517 + +1.4 1,311,518 - +0.5 1,311,519 + -0.3 1,311,520 - -1.6 1,311,523 - +0.3 1,311,555 + +0.3 1,311,616 - +1.1 1,311,619 + -2.1 1,311,620 - -2.2 1,311,636 - -1.1 1,311,636 - -0.6 1,311,640 + -0.1 1,311,640 + +1.4 1,311,641 - -2.1 1,311,664 + -1.6 1,311,665 - -0.6 1,311,688 - +0.1 1,311,690 + +0.3 1,311,798 + +0.5 1,311,955 + +2.5 1,312,004 + -1.6 1,312,008 - -0.6 1,312,016 - +0.5 1,312,058 + +0.7 1,312,180 + -1.6 1,312,181 - +0.4 1,312,181 - +0.8 1,312,254 + HGI48_RS06165 0.40 -1.1 1,312,377 - -0.5 1,312,377 - +0.1 1,312,420 + -0.6 1,312,452 + -1.6 1,312,656 + HGI48_RS06170 0.56 -1.4 1,312,663 + HGI48_RS06170 0.58 -0.1 1,312,663 + HGI48_RS06170 0.58 +1.1 1,312,663 + HGI48_RS06170 0.58 -0.1 1,312,664 - +1.4 1,312,664 - HGI48_RS06170 0.58 -0.5 1,312,664 - HGI48_RS06170 0.58 -1.2 1,312,664 - HGI48_RS06170 0.58 +0.1 1,312,664 - HGI48_RS06170 0.58 -0.3 1,312,683 - +2.5 1,312,683 - HGI48_RS06170 0.63 -2.1 1,312,742 + HGI48_RS06170 0.79 +1.3 1,312,742 + HGI48_RS06170 0.79 +0.3 1,312,743 - HGI48_RS06170 0.79 -0.1 1,312,746 - HGI48_RS06170 0.80 +0.2 1,312,809 + -1.4 1,312,809 + -0.6 1,312,814 + +1.5 1,312,815 - -0.2 1,312,817 + +0.9 1,312,817 + -0.9 1,312,817 + -0.6 1,312,818 - -1.1 1,312,818 - -0.5 1,312,818 - +1.2 1,312,818 - -0.3 1,312,818 - +0.2 1,312,819 + +0.0 1,312,819 + -0.6 1,312,819 + -0.9 1,312,819 + +0.9 1,312,819 + +2.3 1,312,819 + +0.6 1,312,819 + +1.5 1,312,819 + +0.4 1,312,819 + +1.8 1,312,819 + -0.8 1,312,819 + +0.1 1,312,819 + -1.1 1,312,820 - -1.1 1,312,820 - +2.1 1,312,820 - -1.1 1,312,820 - +0.4 1,312,820 - +0.7 1,312,820 - -1.4 1,312,820 - -1.1 1,312,820 - -2.2 1,312,820 - +0.4 1,312,820 - +1.9 1,312,820 - +1.1 1,312,820 - +1.7 1,312,820 - -2.1 1,312,823 + -1.9 1,312,823 + -0.6 1,312,823 + -1.4 1,312,823 + -1.0 1,312,823 + -1.1 1,312,823 + -1.6 1,312,823 + +1.3 1,312,823 + +0.8 1,312,823 + -1.6 1,312,823 + -0.8 1,312,824 - +0.1 1,312,824 - -0.6 1,312,824 - -0.1 1,312,824 - -0.2 1,312,824 - -0.0 1,312,824 - +0.4 1,312,824 - -0.3 1,312,824 - -0.1 1,312,824 - -0.6 1,312,824 - -0.5 1,312,945 + +3.3 1,312,948 + -0.4 1,312,948 + +2.2 1,312,948 + -0.2 1,312,948 + +0.4 1,312,987 + +0.8 1,313,003 - -0.6 1,313,013 + -0.5 1,313,013 + -1.6 1,313,013 + +1.2 1,313,013 + -1.2 1,313,014 - -0.6 1,313,014 - +0.8 1,313,014 - -0.6 1,313,017 + -1.4 1,313,017 + +0.9 1,313,017 + +1.3 1,313,017 + +1.4 1,313,017 + -1.2 1,313,018 - -0.6 1,313,018 - +0.4 1,313,018 - +0.5 1,313,070 + -0.6 1,313,097 + +0.8 1,313,097 + +1.1 1,313,103 + +1.2 1,313,173 + +1.7 1,313,173 + HGI48_RS06175 0.18 +1.4 1,313,174 - HGI48_RS06175 0.18 -1.9 1,313,275 + +2.5 1,313,285 - HGI48_RS06175 0.32 +1.5 1,313,311 + HGI48_RS06175 0.35 -1.4 1,313,311 + +2.9 1,313,312 - HGI48_RS06175 0.35 +0.1 1,313,312 - HGI48_RS06175 0.35 +0.5 1,313,312 - HGI48_RS06175 0.35 -1.9 1,313,314 + HGI48_RS06175 0.36 +0.2 1,313,314 + HGI48_RS06175 0.36 +0.1 1,313,314 + HGI48_RS06175 0.36 +0.9 1,313,314 + HGI48_RS06175 0.36 -0.4 1,313,314 + HGI48_RS06175 0.36 +0.3 1,313,314 + HGI48_RS06175 0.36 -3.1 1,313,315 - HGI48_RS06175 0.36 -0.1 1,313,315 - HGI48_RS06175 0.36 -0.1 1,313,315 - HGI48_RS06175 0.36 -0.3 1,313,315 - HGI48_RS06175 0.36 -0.6 1,313,315 - -0.1 1,313,315 - HGI48_RS06175 0.36 +0.1 1,313,354 + HGI48_RS06175 0.41 -1.1 1,313,372 + HGI48_RS06175 0.43 +0.8 1,313,372 + HGI48_RS06175 0.43 -1.1 1,313,372 + HGI48_RS06175 0.43 -0.4 1,313,372 + +1.7 1,313,372 + +1.7 1,313,373 - HGI48_RS06175 0.43 -0.1
Or see this region's nucleotide sequence