Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05980

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,271,376	-				-1.6
1,271,443	+				+0.0
1,271,664	-		HGI48_RS05975	0.32	+1.3
1,271,669	-		HGI48_RS05975	0.33	-0.0
1,271,703	+		HGI48_RS05975	0.36	+0.4
1,271,704	-		HGI48_RS05975	0.36	+0.5
1,271,745	+		HGI48_RS05975	0.41	+0.6
1,271,745	+		HGI48_RS05975	0.41	-0.3
1,271,745	+		HGI48_RS05975	0.41	+0.4
1,271,746	-		HGI48_RS05975	0.41	-1.5
1,271,759	+		HGI48_RS05975	0.42	+1.2
1,271,759	+		HGI48_RS05975	0.42	-1.0
1,271,759	+		HGI48_RS05975	0.42	-1.0
1,271,760	-		HGI48_RS05975	0.42	+0.2
1,271,760	-		HGI48_RS05975	0.42	+0.8
1,271,780	-		HGI48_RS05975	0.44	+0.3
1,271,784	+		HGI48_RS05975	0.45	+0.2
1,271,785	-		HGI48_RS05975	0.45	-0.0
1,271,785	-		HGI48_RS05975	0.45	-1.4
1,271,879	+		HGI48_RS05975	0.54	+0.9
1,271,879	+		HGI48_RS05975	0.54	-0.3
1,272,043	+		HGI48_RS05975	0.71	+0.7
1,272,044	-		HGI48_RS05975	0.72	+0.2
1,272,044	-		HGI48_RS05975	0.72	+0.4
1,272,046	+				+1.4
1,272,046	+		HGI48_RS05975	0.72	-1.3
1,272,046	+		HGI48_RS05975	0.72	-1.0
1,272,046	+		HGI48_RS05975	0.72	-1.4
1,272,047	-		HGI48_RS05975	0.72	-1.4
1,272,047	-		HGI48_RS05975	0.72	+0.3
1,272,047	-		HGI48_RS05975	0.72	+1.2
1,272,047	-		HGI48_RS05975	0.72	-0.3
1,272,047	-		HGI48_RS05975	0.72	+1.5
1,272,047	-		HGI48_RS05975	0.72	+0.6
1,272,220	+		HGI48_RS05975	0.90	-1.6
1,272,221	-		HGI48_RS05975	0.90	+0.3
1,272,229	+				+1.4
1,272,230	-				+1.3
1,272,420	+				+0.5
1,272,420	+				+2.2
1,272,420	+				+0.6
1,272,421	-				-1.4
1,272,421	-				-0.1
1,272,501	+		HGI48_RS05980	0.14	-0.5
1,272,502	-		HGI48_RS05980	0.14	+0.4
1,272,502	-		HGI48_RS05980	0.14	-0.4
1,272,573	+		HGI48_RS05980	0.19	-1.4
1,272,573	+		HGI48_RS05980	0.19	-1.6
1,272,634	+				+2.5
1,272,634	+		HGI48_RS05980	0.24	-0.5
1,272,634	+		HGI48_RS05980	0.24	-1.0
1,272,634	+		HGI48_RS05980	0.24	-0.4
1,272,634	+		HGI48_RS05980	0.24	+0.3
1,272,635	-		HGI48_RS05980	0.24	+2.1
1,272,655	-		HGI48_RS05980	0.25	+0.1
1,272,655	-		HGI48_RS05980	0.25	+0.2
1,272,655	-		HGI48_RS05980	0.25	-0.6
1,272,771	+		HGI48_RS05980	0.34	+1.4
1,272,771	+		HGI48_RS05980	0.34	-0.0
1,272,771	+		HGI48_RS05980	0.34	-0.0
1,272,772	-				+0.4
1,272,772	-		HGI48_RS05980	0.34	-0.3
1,272,772	-		HGI48_RS05980	0.34	-0.6
1,272,772	-		HGI48_RS05980	0.34	-2.2
1,272,772	-				+1.4
1,272,963	+				+2.0
1,272,963	+		HGI48_RS05980	0.48	-0.6
1,272,963	+		HGI48_RS05980	0.48	+0.5
1,272,964	-		HGI48_RS05980	0.48	-0.0
1,272,964	-		HGI48_RS05980	0.48	-0.3
1,273,447	+		HGI48_RS05980	0.83	+0.5
1,273,447	+		HGI48_RS05980	0.83	+0.4
1,273,447	+		HGI48_RS05980	0.83	+0.1
1,273,448	-		HGI48_RS05980	0.83	-1.6
1,273,591	+				+0.6
1,273,591	+				-0.4
1,273,749	+				+1.1
1,273,749	+				+1.4
1,273,749	+				+0.7
1,273,749	+				+0.2
1,273,749	+				-1.4
1,273,749	+				-0.8
1,273,750	-				+0.3
1,273,750	-				+1.4
1,273,750	-				-0.4
1,273,750	-				+1.0
1,273,788	+				+1.3
1,273,789	-				-0.8
1,273,789	-				+0.1
1,273,792	+				+1.3
1,273,792	+				+2.5
1,273,793	-				-0.6
1,273,793	-				+1.4
1,273,793	-				-0.3
1,273,815	+				+1.0
1,273,816	-				-0.0
1,273,820	-				+0.5
1,273,831	+				+1.7
1,273,831	+				-1.0
1,273,832	-				-0.6
1,273,860	+				-1.5
1,273,860	+				-2.4
1,273,861	-				-1.0
1,273,861	-				+0.4
1,273,879	+				-0.5
1,273,879	+				-0.0
1,273,879	+				-0.2
1,273,880	-				+0.8
1,273,880	-				-0.4
1,273,880	-				+2.1
1,273,880	-				-0.4
1,273,880	-				-0.0
1,273,880	-				-1.4
1,273,898	+				+1.5
1,273,952	+				+1.4
1,273,953	-		HGI48_RS05985	0.13	-1.2
1,273,953	-		HGI48_RS05985	0.13	-0.6
1,273,953	-		HGI48_RS05985	0.13	-0.0
1,273,977	+		HGI48_RS05985	0.17	-0.0
1,273,977	+		HGI48_RS05985	0.17	-1.8
1,273,977	+		HGI48_RS05985	0.17	-0.0
1,273,977	+		HGI48_RS05985	0.17	-0.0
1,273,978	-		HGI48_RS05985	0.17	-0.0
1,273,978	-		HGI48_RS05985	0.17	-0.5
1,273,978	-		HGI48_RS05985	0.17	-1.5
1,273,978	-		HGI48_RS05985	0.17	-0.6
1,274,070	+		HGI48_RS05985	0.34	+0.3
1,274,088	+		HGI48_RS05985	0.37	+0.5
1,274,089	-		HGI48_RS05985	0.38	+0.4
1,274,089	-		HGI48_RS05985	0.38	+1.4
1,274,090	+		HGI48_RS05985	0.38	-0.1
1,274,090	+		HGI48_RS05985	0.38	-1.8
1,274,090	+		HGI48_RS05985	0.38	+1.8
1,274,090	+				+1.4
1,274,090	+		HGI48_RS05985	0.38	+1.0
1,274,091	-		HGI48_RS05985	0.38	-1.8
1,274,091	-		HGI48_RS05985	0.38	+0.5
1,274,139	+		HGI48_RS05985	0.47	+1.2
1,274,139	+		HGI48_RS05985	0.47	-0.5
1,274,139	+		HGI48_RS05985	0.47	-0.5
1,274,139	+		HGI48_RS05985	0.47	-1.8
1,274,140	-		HGI48_RS05985	0.47	-1.5
1,274,159	+		HGI48_RS05985	0.50	+0.0
1,274,160	-		HGI48_RS05985	0.51	-0.8
1,274,160	-		HGI48_RS05985	0.51	-0.3
1,274,169	+		HGI48_RS05985	0.52	-0.3
1,274,194	+		HGI48_RS05985	0.57	+0.2
1,274,194	+		HGI48_RS05985	0.57	+0.1
1,274,195	-		HGI48_RS05985	0.57	-1.8
1,274,195	-		HGI48_RS05985	0.57	-1.0
1,274,238	+				-0.6
1,274,238	+				+1.0
1,274,238	+		HGI48_RS05985	0.65	+0.7
1,274,239	-		HGI48_RS05985	0.65	-0.0
1,274,239	-		HGI48_RS05985	0.65	-1.0
1,274,277	+		HGI48_RS05985	0.72	+0.3
1,274,277	+		HGI48_RS05985	0.72	+0.4
1,274,277	+		HGI48_RS05985	0.72	+1.0
1,274,278	-		HGI48_RS05985	0.72	-1.4
1,274,278	-		HGI48_RS05985	0.72	-1.9
1,274,278	-		HGI48_RS05985	0.72	-0.5
1,274,278	-				-0.0
1,274,278	-		HGI48_RS05985	0.72	+0.5
1,274,346	+		HGI48_RS05985	0.85	-0.5
1,274,347	-		HGI48_RS05985	0.85	+1.4
1,274,355	-		HGI48_RS05985	0.86	-0.0
1,274,403	+				-2.7
1,274,403	+				-0.2
1,274,404	-				-0.2
1,274,404	-				-0.6
1,274,404	-				-0.9
1,274,404	-				-0.4
1,274,465	+				+0.2