Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04750

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS04740 and HGI48_RS04745 overlap by 4 nucleotidesHGI48_RS04745 and HGI48_RS04750 are separated by 4 nucleotidesHGI48_RS04750 and HGI48_RS04755 overlap by 4 nucleotides HGI48_RS04740: HGI48_RS04740 - HAD family hydrolase, at 993,581 to 994,276 _RS04740 HGI48_RS04745: HGI48_RS04745 - hypothetical protein, at 994,273 to 995,142 _RS04745 HGI48_RS04750: HGI48_RS04750 - hypothetical protein, at 995,147 to 995,938 _RS04750 HGI48_RS04755: HGI48_RS04755 - phosphotransferase, at 995,935 to 996,981 _RS04755 Position (kb) 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 994.155 kb on + strand, within HGI48_RS04740at 994.191 kb on + strand, within HGI48_RS04740at 994.237 kb on - strandat 994.254 kb on + strandat 994.255 kb on - strandat 994.347 kb on + strandat 994.348 kb on - strandat 994.348 kb on - strandat 994.444 kb on + strand, within HGI48_RS04745at 994.572 kb on + strand, within HGI48_RS04745at 994.573 kb on - strand, within HGI48_RS04745at 994.573 kb on - strandat 994.685 kb on + strand, within HGI48_RS04745at 994.710 kb on + strandat 994.711 kb on - strand, within HGI48_RS04745at 994.741 kb on + strand, within HGI48_RS04745at 994.744 kb on - strand, within HGI48_RS04745at 994.774 kb on - strand, within HGI48_RS04745at 994.808 kb on + strand, within HGI48_RS04745at 994.808 kb on + strand, within HGI48_RS04745at 994.809 kb on - strand, within HGI48_RS04745at 994.811 kb on - strand, within HGI48_RS04745at 994.850 kb on + strand, within HGI48_RS04745at 994.851 kb on - strand, within HGI48_RS04745at 994.897 kb on + strand, within HGI48_RS04745at 994.910 kb on + strand, within HGI48_RS04745at 994.978 kb on + strandat 994.979 kb on - strand, within HGI48_RS04745at 994.982 kb on + strand, within HGI48_RS04745at 995.001 kb on - strand, within HGI48_RS04745at 995.012 kb on + strand, within HGI48_RS04745at 995.024 kb on + strand, within HGI48_RS04745at 995.036 kb on + strand, within HGI48_RS04745at 995.036 kb on + strand, within HGI48_RS04745at 995.036 kb on + strandat 995.037 kb on - strandat 995.037 kb on - strand, within HGI48_RS04745at 995.052 kb on + strand, within HGI48_RS04745at 995.052 kb on + strand, within HGI48_RS04745at 995.053 kb on - strand, within HGI48_RS04745at 995.057 kb on - strandat 995.085 kb on - strandat 995.085 kb on - strandat 995.086 kb on + strandat 995.087 kb on - strandat 995.125 kb on - strandat 995.170 kb on - strandat 995.178 kb on - strandat 995.197 kb on + strandat 995.198 kb on - strandat 995.226 kb on + strandat 995.227 kb on - strand, within HGI48_RS04750at 995.227 kb on - strand, within HGI48_RS04750at 995.227 kb on - strand, within HGI48_RS04750at 995.227 kb on - strand, within HGI48_RS04750at 995.276 kb on + strand, within HGI48_RS04750at 995.318 kb on - strand, within HGI48_RS04750at 995.318 kb on - strand, within HGI48_RS04750at 995.339 kb on - strandat 995.340 kb on + strand, within HGI48_RS04750at 995.341 kb on - strand, within HGI48_RS04750at 995.342 kb on - strand, within HGI48_RS04750at 995.416 kb on + strandat 995.416 kb on + strand, within HGI48_RS04750at 995.417 kb on - strand, within HGI48_RS04750at 995.417 kb on - strand, within HGI48_RS04750at 995.432 kb on - strand, within HGI48_RS04750at 995.457 kb on - strand, within HGI48_RS04750at 995.513 kb on - strand, within HGI48_RS04750at 995.649 kb on + strandat 995.650 kb on - strand, within HGI48_RS04750at 995.654 kb on - strand, within HGI48_RS04750at 995.668 kb on - strand, within HGI48_RS04750at 995.706 kb on + strand, within HGI48_RS04750at 995.709 kb on + strand, within HGI48_RS04750at 995.709 kb on + strand, within HGI48_RS04750at 995.709 kb on + strand, within HGI48_RS04750at 995.710 kb on - strand, within HGI48_RS04750at 995.710 kb on - strand, within HGI48_RS04750at 995.718 kb on + strand, within HGI48_RS04750at 995.776 kb on + strand, within HGI48_RS04750at 995.776 kb on + strand, within HGI48_RS04750at 995.932 kb on + strandat 995.933 kb on - strandat 995.982 kb on - strandat 996.019 kb on - strandat 996.083 kb on - strand, within HGI48_RS04755at 996.348 kb on - strand, within HGI48_RS04755at 996.423 kb on - strand, within HGI48_RS04755at 996.674 kb on - strandat 996.737 kb on + strand, within HGI48_RS04755at 996.798 kb on - strand, within HGI48_RS04755at 996.835 kb on - strand, within HGI48_RS04755at 996.844 kb on + strand, within HGI48_RS04755at 996.863 kb on - strand, within HGI48_RS04755at 996.867 kb on - strand, within HGI48_RS04755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
994,155 + HGI48_RS04740 0.82 -0.2
994,191 + HGI48_RS04740 0.88 +0.0
994,237 - -0.4
994,254 + -0.6
994,255 - -0.4
994,347 + +1.6
994,348 - +0.8
994,348 - +0.0
994,444 + HGI48_RS04745 0.20 -1.3
994,572 + HGI48_RS04745 0.34 -0.1
994,573 - HGI48_RS04745 0.34 -1.0
994,573 - +0.4
994,685 + HGI48_RS04745 0.47 -1.0
994,710 + +1.8
994,711 - HGI48_RS04745 0.50 +0.2
994,741 + HGI48_RS04745 0.54 +1.3
994,744 - HGI48_RS04745 0.54 -0.8
994,774 - HGI48_RS04745 0.58 -0.6
994,808 + HGI48_RS04745 0.61 -0.8
994,808 + HGI48_RS04745 0.61 -0.2
994,809 - HGI48_RS04745 0.62 +1.0
994,811 - HGI48_RS04745 0.62 -2.3
994,850 + HGI48_RS04745 0.66 -0.1
994,851 - HGI48_RS04745 0.66 -0.4
994,897 + HGI48_RS04745 0.72 +1.0
994,910 + HGI48_RS04745 0.73 -1.8
994,978 + +1.0
994,979 - HGI48_RS04745 0.81 -0.8
994,982 + HGI48_RS04745 0.81 -1.3
995,001 - HGI48_RS04745 0.84 -0.4
995,012 + HGI48_RS04745 0.85 -3.2
995,024 + HGI48_RS04745 0.86 +0.6
995,036 + HGI48_RS04745 0.88 +0.7
995,036 + HGI48_RS04745 0.88 -0.3
995,036 + +1.0
995,037 - +0.0
995,037 - HGI48_RS04745 0.88 -1.3
995,052 + HGI48_RS04745 0.90 -1.4
995,052 + HGI48_RS04745 0.90 +0.9
995,053 - HGI48_RS04745 0.90 +0.0
995,057 - +1.8
995,085 - +1.3
995,085 - +1.6
995,086 + +1.0
995,087 - +0.3
995,125 - -0.3
995,170 - -0.1
995,178 - -2.4
995,197 + +1.8
995,198 - +1.0
995,226 + -0.8
995,227 - HGI48_RS04750 0.10 -1.6
995,227 - HGI48_RS04750 0.10 +0.1
995,227 - HGI48_RS04750 0.10 -1.8
995,227 - HGI48_RS04750 0.10 +1.2
995,276 + HGI48_RS04750 0.16 +0.7
995,318 - HGI48_RS04750 0.22 -1.1
995,318 - HGI48_RS04750 0.22 -1.6
995,339 - +0.0
995,340 + HGI48_RS04750 0.24 -1.4
995,341 - HGI48_RS04750 0.24 -1.2
995,342 - HGI48_RS04750 0.25 -0.5
995,416 + +1.0
995,416 + HGI48_RS04750 0.34 +0.0
995,417 - HGI48_RS04750 0.34 +0.1
995,417 - HGI48_RS04750 0.34 -1.0
995,432 - HGI48_RS04750 0.36 +1.3
995,457 - HGI48_RS04750 0.39 +0.2
995,513 - HGI48_RS04750 0.46 -0.1
995,649 + +0.0
995,650 - HGI48_RS04750 0.64 +0.4
995,654 - HGI48_RS04750 0.64 +0.6
995,668 - HGI48_RS04750 0.66 -0.6
995,706 + HGI48_RS04750 0.71 -0.4
995,709 + HGI48_RS04750 0.71 -0.6
995,709 + HGI48_RS04750 0.71 +0.0
995,709 + HGI48_RS04750 0.71 +0.5
995,710 - HGI48_RS04750 0.71 +0.0
995,710 - HGI48_RS04750 0.71 -0.3
995,718 + HGI48_RS04750 0.72 +0.6
995,776 + HGI48_RS04750 0.79 -0.1
995,776 + HGI48_RS04750 0.79 -1.3
995,932 + -0.3
995,933 - -1.6
995,982 - -1.0
996,019 - +0.0
996,083 - HGI48_RS04755 0.14 -1.0
996,348 - HGI48_RS04755 0.39 -0.6
996,423 - HGI48_RS04755 0.47 +0.8
996,674 - +0.4
996,737 + HGI48_RS04755 0.77 -1.6
996,798 - HGI48_RS04755 0.82 -0.3
996,835 - HGI48_RS04755 0.86 -0.3
996,844 + HGI48_RS04755 0.87 +1.3
996,863 - HGI48_RS04755 0.89 -0.9
996,867 - HGI48_RS04755 0.89 +0.0

Or see this region's nucleotide sequence