Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04220

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04215 and HGI48_RS04220 are separated by 138 nucleotidesHGI48_RS04220 and HGI48_RS04225 are separated by 694 nucleotides HGI48_RS04215: HGI48_RS04215 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 887,297 to 888,214 _RS04215 HGI48_RS04220: HGI48_RS04220 - transposase, at 888,353 to 888,501 _RS04220 HGI48_RS04225: HGI48_RS04225 - hypothetical protein, at 889,196 to 889,498 _RS04225 Position (kb) 888 889Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 887.396 kb on + strand, within HGI48_RS04215at 887.419 kb on + strand, within HGI48_RS04215at 887.443 kb on + strand, within HGI48_RS04215at 887.443 kb on + strand, within HGI48_RS04215at 887.443 kb on + strand, within HGI48_RS04215at 887.444 kb on - strand, within HGI48_RS04215at 887.444 kb on - strand, within HGI48_RS04215at 887.563 kb on + strand, within HGI48_RS04215at 887.573 kb on + strand, within HGI48_RS04215at 887.574 kb on - strand, within HGI48_RS04215at 887.574 kb on - strand, within HGI48_RS04215at 887.574 kb on - strand, within HGI48_RS04215at 887.578 kb on - strand, within HGI48_RS04215at 887.607 kb on + strand, within HGI48_RS04215at 887.608 kb on - strand, within HGI48_RS04215at 887.608 kb on - strand, within HGI48_RS04215at 887.608 kb on - strand, within HGI48_RS04215at 887.608 kb on - strand, within HGI48_RS04215at 887.626 kb on - strand, within HGI48_RS04215at 887.626 kb on - strand, within HGI48_RS04215at 887.626 kb on - strand, within HGI48_RS04215at 887.662 kb on + strand, within HGI48_RS04215at 887.662 kb on + strand, within HGI48_RS04215at 887.662 kb on + strand, within HGI48_RS04215at 887.662 kb on + strand, within HGI48_RS04215at 887.663 kb on - strandat 887.680 kb on + strand, within HGI48_RS04215at 887.705 kb on - strand, within HGI48_RS04215at 887.705 kb on - strand, within HGI48_RS04215at 887.750 kb on + strand, within HGI48_RS04215at 887.751 kb on - strand, within HGI48_RS04215at 887.772 kb on + strand, within HGI48_RS04215at 887.772 kb on + strand, within HGI48_RS04215at 887.772 kb on + strand, within HGI48_RS04215at 887.773 kb on - strand, within HGI48_RS04215at 887.783 kb on + strand, within HGI48_RS04215at 887.783 kb on + strandat 887.783 kb on + strand, within HGI48_RS04215at 887.783 kb on + strandat 887.783 kb on + strand, within HGI48_RS04215at 887.783 kb on + strand, within HGI48_RS04215at 887.783 kb on + strand, within HGI48_RS04215at 887.783 kb on + strand, within HGI48_RS04215at 887.784 kb on - strandat 887.784 kb on - strand, within HGI48_RS04215at 887.784 kb on - strand, within HGI48_RS04215at 887.784 kb on - strand, within HGI48_RS04215at 887.784 kb on - strand, within HGI48_RS04215at 887.784 kb on - strand, within HGI48_RS04215at 887.821 kb on + strand, within HGI48_RS04215at 887.822 kb on - strand, within HGI48_RS04215at 887.822 kb on - strand, within HGI48_RS04215at 887.822 kb on - strand, within HGI48_RS04215at 887.844 kb on + strand, within HGI48_RS04215at 887.845 kb on - strand, within HGI48_RS04215at 887.885 kb on + strand, within HGI48_RS04215at 887.886 kb on - strandat 887.886 kb on - strand, within HGI48_RS04215at 887.886 kb on - strand, within HGI48_RS04215at 887.888 kb on - strand, within HGI48_RS04215at 887.914 kb on - strand, within HGI48_RS04215at 887.942 kb on + strandat 887.943 kb on - strand, within HGI48_RS04215at 887.943 kb on - strand, within HGI48_RS04215at 887.993 kb on + strand, within HGI48_RS04215at 887.994 kb on - strand, within HGI48_RS04215at 887.994 kb on - strand, within HGI48_RS04215at 887.994 kb on - strand, within HGI48_RS04215at 888.004 kb on - strand, within HGI48_RS04215at 888.128 kb on + strandat 888.166 kb on - strandat 888.166 kb on - strandat 888.177 kb on + strandat 888.177 kb on + strandat 888.231 kb on - strandat 888.262 kb on + strandat 888.262 kb on + strandat 888.263 kb on - strandat 888.304 kb on - strandat 888.309 kb on - strandat 888.347 kb on + strandat 888.348 kb on - strandat 888.348 kb on - strandat 888.369 kb on - strand, within HGI48_RS04220at 888.369 kb on - strand, within HGI48_RS04220at 888.370 kb on + strand, within HGI48_RS04220at 888.370 kb on + strand, within HGI48_RS04220at 888.467 kb on + strand, within HGI48_RS04220at 888.474 kb on - strand, within HGI48_RS04220at 888.552 kb on + strandat 888.553 kb on - strandat 888.612 kb on - strandat 888.636 kb on - strandat 888.781 kb on - strandat 888.790 kb on - strandat 888.819 kb on + strandat 888.838 kb on - strandat 888.991 kb on + strandat 889.014 kb on + strandat 889.017 kb on + strandat 889.030 kb on + strandat 889.040 kb on + strandat 889.066 kb on - strandat 889.183 kb on + strandat 889.246 kb on + strand, within HGI48_RS04225at 889.253 kb on + strand, within HGI48_RS04225at 889.254 kb on - strandat 889.254 kb on - strand, within HGI48_RS04225at 889.254 kb on - strand, within HGI48_RS04225at 889.254 kb on - strand, within HGI48_RS04225at 889.322 kb on - strandat 889.418 kb on + strandat 889.419 kb on - strand, within HGI48_RS04225at 889.448 kb on - strand, within HGI48_RS04225at 889.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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887,396 + HGI48_RS04215 0.11 -0.5
887,419 + HGI48_RS04215 0.13 -1.6
887,443 + HGI48_RS04215 0.16 +0.1
887,443 + HGI48_RS04215 0.16 -1.9
887,443 + HGI48_RS04215 0.16 +1.4
887,444 - HGI48_RS04215 0.16 -0.5
887,444 - HGI48_RS04215 0.16 +0.2
887,563 + HGI48_RS04215 0.29 -0.1
887,573 + HGI48_RS04215 0.30 +0.6
887,574 - HGI48_RS04215 0.30 +0.8
887,574 - HGI48_RS04215 0.30 -0.4
887,574 - HGI48_RS04215 0.30 -0.9
887,578 - HGI48_RS04215 0.31 -1.5
887,607 + HGI48_RS04215 0.34 +0.8
887,608 - HGI48_RS04215 0.34 -2.1
887,608 - HGI48_RS04215 0.34 +0.3
887,608 - HGI48_RS04215 0.34 -1.1
887,608 - HGI48_RS04215 0.34 -1.1
887,626 - HGI48_RS04215 0.36 +0.5
887,626 - HGI48_RS04215 0.36 +1.1
887,626 - HGI48_RS04215 0.36 -1.4
887,662 + HGI48_RS04215 0.40 -2.3
887,662 + HGI48_RS04215 0.40 -0.2
887,662 + HGI48_RS04215 0.40 +0.3
887,662 + HGI48_RS04215 0.40 -0.9
887,663 - -0.5
887,680 + HGI48_RS04215 0.42 -0.5
887,705 - HGI48_RS04215 0.44 -0.3
887,705 - HGI48_RS04215 0.44 +0.3
887,750 + HGI48_RS04215 0.49 -1.5
887,751 - HGI48_RS04215 0.49 +1.3
887,772 + HGI48_RS04215 0.52 -1.1
887,772 + HGI48_RS04215 0.52 +0.1
887,772 + HGI48_RS04215 0.52 -0.5
887,773 - HGI48_RS04215 0.52 -0.8
887,783 + HGI48_RS04215 0.53 +0.7
887,783 + +0.1
887,783 + HGI48_RS04215 0.53 +0.1
887,783 + +2.1
887,783 + HGI48_RS04215 0.53 +0.7
887,783 + HGI48_RS04215 0.53 -1.3
887,783 + HGI48_RS04215 0.53 -1.3
887,783 + HGI48_RS04215 0.53 -0.2
887,784 - -0.5
887,784 - HGI48_RS04215 0.53 -0.9
887,784 - HGI48_RS04215 0.53 -2.3
887,784 - HGI48_RS04215 0.53 +0.3
887,784 - HGI48_RS04215 0.53 -0.5
887,784 - HGI48_RS04215 0.53 -1.3
887,821 + HGI48_RS04215 0.57 +0.1
887,822 - HGI48_RS04215 0.57 -0.6
887,822 - HGI48_RS04215 0.57 -1.3
887,822 - HGI48_RS04215 0.57 +1.1
887,844 + HGI48_RS04215 0.60 -0.2
887,845 - HGI48_RS04215 0.60 -1.5
887,885 + HGI48_RS04215 0.64 +1.1
887,886 - +0.5
887,886 - HGI48_RS04215 0.64 -2.3
887,886 - HGI48_RS04215 0.64 +1.1
887,888 - HGI48_RS04215 0.64 -0.3
887,914 - HGI48_RS04215 0.67 +0.2
887,942 + +0.5
887,943 - HGI48_RS04215 0.70 +0.2
887,943 - HGI48_RS04215 0.70 -0.3
887,993 + HGI48_RS04215 0.76 -0.9
887,994 - HGI48_RS04215 0.76 -1.3
887,994 - HGI48_RS04215 0.76 +0.1
887,994 - HGI48_RS04215 0.76 -1.9
888,004 - HGI48_RS04215 0.77 +0.9
888,128 + -2.3
888,166 - +0.2
888,166 - -1.3
888,177 + -0.9
888,177 + +0.6
888,231 - -2.3
888,262 + +0.0
888,262 + -1.0
888,263 - +1.0
888,304 - -0.1
888,309 - +1.0
888,347 + -0.1
888,348 - +1.8
888,348 - +0.0
888,369 - HGI48_RS04220 0.11 -2.1
888,369 - HGI48_RS04220 0.11 +0.4
888,370 + HGI48_RS04220 0.11 -0.2
888,370 + HGI48_RS04220 0.11 -1.3
888,467 + HGI48_RS04220 0.77 -0.5
888,474 - HGI48_RS04220 0.81 +0.4
888,552 + -1.3
888,553 - -1.3
888,612 - -0.5
888,636 - -1.2
888,781 - -1.4
888,790 - +0.0
888,819 + +0.7
888,838 - -0.5
888,991 + +4.7
889,014 + -1.1
889,017 + +0.3
889,030 + +0.2
889,040 + +0.2
889,066 - +0.0
889,183 + +0.6
889,246 + HGI48_RS04225 0.17 +1.3
889,253 + HGI48_RS04225 0.19 +0.8
889,254 - +0.5
889,254 - HGI48_RS04225 0.19 +0.1
889,254 - HGI48_RS04225 0.19 -0.5
889,254 - HGI48_RS04225 0.19 -2.8
889,322 - +0.5
889,418 + +2.0
889,419 - HGI48_RS04225 0.74 -1.5
889,448 - HGI48_RS04225 0.83 -0.5
889,468 + +0.4

Or see this region's nucleotide sequence