Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04205 and HGI48_RS04210 are separated by 452 nucleotides HGI48_RS04210 and HGI48_RS04215 overlap by 17 nucleotides HGI48_RS04215 and HGI48_RS04220 are separated by 138 nucleotides HGI48_RS04220 and HGI48_RS04225 are separated by 694 nucleotides
HGI48_RS04205: HGI48_RS04205 - integrase arm-type DNA-binding domain-containing protein, at 886,117 to 886,315
_RS04205
HGI48_RS04210: HGI48_RS04210 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 886,768 to 887,313
_RS04210
HGI48_RS04215: HGI48_RS04215 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 887,297 to 888,214
_RS04215
HGI48_RS04220: HGI48_RS04220 - transposase, at 888,353 to 888,501
_RS04220
HGI48_RS04225: HGI48_RS04225 - hypothetical protein, at 889,196 to 889,498
_RS04225
Position (kb) 887
888
889 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 886.318 kb on + strand at 886.319 kb on - strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.380 kb on + strand at 886.380 kb on + strand at 886.401 kb on + strand at 886.402 kb on - strand at 886.402 kb on - strand at 886.402 kb on - strand at 886.404 kb on - strand at 886.409 kb on + strand at 886.409 kb on + strand at 886.443 kb on + strand at 886.444 kb on - strand at 886.444 kb on - strand at 886.444 kb on - strand at 886.447 kb on - strand at 886.529 kb on - strand at 886.553 kb on + strand at 886.554 kb on - strand at 886.555 kb on + strand at 886.559 kb on + strand at 886.565 kb on + strand at 886.566 kb on - strand at 886.567 kb on + strand at 886.715 kb on + strand at 886.724 kb on - strand at 886.724 kb on - strand at 886.724 kb on - strand at 886.738 kb on + strand at 886.742 kb on + strand at 886.743 kb on - strand at 886.882 kb on - strand at 886.904 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.942 kb on + strand, within HGI48_RS04210 at 886.943 kb on - strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.948 kb on + strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.949 kb on - strand, within HGI48_RS04210 at 886.951 kb on - strand, within HGI48_RS04210 at 886.951 kb on - strand, within HGI48_RS04210 at 886.976 kb on - strand, within HGI48_RS04210 at 886.977 kb on + strand at 886.977 kb on + strand, within HGI48_RS04210 at 886.977 kb on + strand, within HGI48_RS04210 at 886.978 kb on - strand, within HGI48_RS04210 at 887.017 kb on + strand, within HGI48_RS04210 at 887.017 kb on + strand at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.018 kb on - strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.019 kb on + strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.020 kb on - strand, within HGI48_RS04210 at 887.023 kb on + strand, within HGI48_RS04210 at 887.023 kb on + strand at 887.024 kb on - strand, within HGI48_RS04210 at 887.024 kb on - strand, within HGI48_RS04210 at 887.121 kb on + strand, within HGI48_RS04210 at 887.122 kb on - strand, within HGI48_RS04210 at 887.149 kb on - strand at 887.154 kb on + strand, within HGI48_RS04210 at 887.188 kb on - strand, within HGI48_RS04210 at 887.188 kb on - strand, within HGI48_RS04210 at 887.188 kb on - strand, within HGI48_RS04210 at 887.191 kb on + strand, within HGI48_RS04210 at 887.192 kb on - strand, within HGI48_RS04210 at 887.224 kb on - strand at 887.246 kb on + strand, within HGI48_RS04210 at 887.262 kb on + strand at 887.291 kb on + strand at 887.291 kb on + strand at 887.291 kb on + strand at 887.292 kb on - strand at 887.292 kb on - strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.293 kb on + strand at 887.396 kb on + strand, within HGI48_RS04215 at 887.419 kb on + strand, within HGI48_RS04215 at 887.443 kb on + strand, within HGI48_RS04215 at 887.443 kb on + strand, within HGI48_RS04215 at 887.443 kb on + strand, within HGI48_RS04215 at 887.444 kb on - strand, within HGI48_RS04215 at 887.444 kb on - strand, within HGI48_RS04215 at 887.563 kb on + strand, within HGI48_RS04215 at 887.573 kb on + strand, within HGI48_RS04215 at 887.574 kb on - strand, within HGI48_RS04215 at 887.574 kb on - strand, within HGI48_RS04215 at 887.574 kb on - strand, within HGI48_RS04215 at 887.578 kb on - strand, within HGI48_RS04215 at 887.607 kb on + strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.608 kb on - strand, within HGI48_RS04215 at 887.626 kb on - strand, within HGI48_RS04215 at 887.626 kb on - strand, within HGI48_RS04215 at 887.626 kb on - strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.662 kb on + strand, within HGI48_RS04215 at 887.663 kb on - strand at 887.680 kb on + strand, within HGI48_RS04215 at 887.705 kb on - strand, within HGI48_RS04215 at 887.705 kb on - strand, within HGI48_RS04215 at 887.750 kb on + strand, within HGI48_RS04215 at 887.751 kb on - strand, within HGI48_RS04215 at 887.772 kb on + strand, within HGI48_RS04215 at 887.772 kb on + strand, within HGI48_RS04215 at 887.772 kb on + strand, within HGI48_RS04215 at 887.773 kb on - strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.783 kb on + strand, within HGI48_RS04215 at 887.784 kb on - strand at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.784 kb on - strand, within HGI48_RS04215 at 887.821 kb on + strand, within HGI48_RS04215 at 887.822 kb on - strand, within HGI48_RS04215 at 887.822 kb on - strand, within HGI48_RS04215 at 887.822 kb on - strand, within HGI48_RS04215 at 887.844 kb on + strand, within HGI48_RS04215 at 887.845 kb on - strand, within HGI48_RS04215 at 887.885 kb on + strand, within HGI48_RS04215 at 887.886 kb on - strand at 887.886 kb on - strand, within HGI48_RS04215 at 887.886 kb on - strand, within HGI48_RS04215 at 887.888 kb on - strand, within HGI48_RS04215 at 887.914 kb on - strand, within HGI48_RS04215 at 887.942 kb on + strand at 887.943 kb on - strand, within HGI48_RS04215 at 887.943 kb on - strand, within HGI48_RS04215 at 887.993 kb on + strand, within HGI48_RS04215 at 887.994 kb on - strand, within HGI48_RS04215 at 887.994 kb on - strand, within HGI48_RS04215 at 887.994 kb on - strand, within HGI48_RS04215 at 888.004 kb on - strand, within HGI48_RS04215 at 888.128 kb on + strand at 888.166 kb on - strand at 888.166 kb on - strand at 888.177 kb on + strand at 888.177 kb on + strand at 888.231 kb on - strand at 888.262 kb on + strand at 888.262 kb on + strand at 888.263 kb on - strand at 888.304 kb on - strand at 888.309 kb on - strand at 888.347 kb on + strand at 888.348 kb on - strand at 888.348 kb on - strand at 888.369 kb on - strand, within HGI48_RS04220 at 888.369 kb on - strand, within HGI48_RS04220 at 888.370 kb on + strand, within HGI48_RS04220 at 888.370 kb on + strand, within HGI48_RS04220 at 888.467 kb on + strand, within HGI48_RS04220 at 888.474 kb on - strand, within HGI48_RS04220 at 888.552 kb on + strand at 888.553 kb on - strand at 888.612 kb on - strand at 888.636 kb on - strand at 888.781 kb on - strand at 888.790 kb on - strand at 888.819 kb on + strand at 888.838 kb on - strand at 888.991 kb on + strand at 889.014 kb on + strand at 889.017 kb on + strand at 889.030 kb on + strand at 889.040 kb on + strand at 889.066 kb on - strand at 889.183 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 886,318 + +3.1 886,319 - +0.3 886,373 + -0.4 886,373 + -0.5 886,380 + +0.7 886,380 + -1.5 886,401 + +0.1 886,402 - -1.9 886,402 - -0.1 886,402 - +0.2 886,404 - -0.1 886,409 + -0.7 886,409 + +0.7 886,443 + -0.9 886,444 - -0.8 886,444 - +0.6 886,444 - +1.1 886,447 - -0.9 886,529 - +0.7 886,553 + +3.8 886,554 - -0.2 886,555 + +0.4 886,559 + -1.8 886,565 + +0.5 886,566 - -2.4 886,567 + +0.1 886,715 + +0.5 886,724 - +0.3 886,724 - -0.1 886,724 - -0.2 886,738 + -1.3 886,742 + -0.8 886,743 - -0.3 886,882 - +1.0 886,904 + HGI48_RS04210 0.25 +0.4 886,942 + HGI48_RS04210 0.32 -1.5 886,942 + HGI48_RS04210 0.32 -0.3 886,942 + HGI48_RS04210 0.32 +0.8 886,943 - HGI48_RS04210 0.32 -1.3 886,948 + HGI48_RS04210 0.33 +0.3 886,948 + HGI48_RS04210 0.33 -1.0 886,948 + HGI48_RS04210 0.33 -2.5 886,948 + HGI48_RS04210 0.33 -1.1 886,948 + HGI48_RS04210 0.33 +1.5 886,948 + HGI48_RS04210 0.33 +2.0 886,949 - HGI48_RS04210 0.33 +0.3 886,949 - HGI48_RS04210 0.33 +0.7 886,949 - HGI48_RS04210 0.33 +0.2 886,951 - HGI48_RS04210 0.34 -0.5 886,951 - HGI48_RS04210 0.34 +0.6 886,976 - HGI48_RS04210 0.38 -2.4 886,977 + +3.0 886,977 + HGI48_RS04210 0.38 +1.4 886,977 + HGI48_RS04210 0.38 -0.3 886,978 - HGI48_RS04210 0.38 +0.4 887,017 + HGI48_RS04210 0.46 -1.0 887,017 + +1.5 887,018 - HGI48_RS04210 0.46 -1.5 887,018 - HGI48_RS04210 0.46 -0.8 887,018 - HGI48_RS04210 0.46 +0.2 887,018 - HGI48_RS04210 0.46 +0.7 887,018 - HGI48_RS04210 0.46 -2.7 887,019 + HGI48_RS04210 0.46 -0.1 887,019 + HGI48_RS04210 0.46 -1.0 887,019 + HGI48_RS04210 0.46 -0.4 887,019 + HGI48_RS04210 0.46 +1.7 887,019 + +1.0 887,019 + HGI48_RS04210 0.46 -0.3 887,019 + HGI48_RS04210 0.46 -0.5 887,019 + HGI48_RS04210 0.46 +3.0 887,019 + HGI48_RS04210 0.46 +0.0 887,020 - HGI48_RS04210 0.46 -1.3 887,020 - HGI48_RS04210 0.46 -0.8 887,020 - HGI48_RS04210 0.46 +1.9 887,020 - HGI48_RS04210 0.46 -0.1 887,020 - HGI48_RS04210 0.46 +0.3 887,020 - HGI48_RS04210 0.46 -0.1 887,023 + HGI48_RS04210 0.47 +1.0 887,023 + +2.0 887,024 - HGI48_RS04210 0.47 -0.7 887,024 - HGI48_RS04210 0.47 +2.2 887,121 + HGI48_RS04210 0.65 -1.3 887,122 - HGI48_RS04210 0.65 -2.0 887,149 - +0.5 887,154 + HGI48_RS04210 0.71 -1.3 887,188 - HGI48_RS04210 0.77 -0.8 887,188 - HGI48_RS04210 0.77 +0.0 887,188 - HGI48_RS04210 0.77 +0.5 887,191 + HGI48_RS04210 0.77 -1.8 887,192 - HGI48_RS04210 0.78 -0.1 887,224 - +1.5 887,246 + HGI48_RS04210 0.88 +0.2 887,262 + +2.0 887,291 + +1.8 887,291 + -1.5 887,291 + -2.5 887,292 - +0.0 887,292 - -1.0 887,293 + -0.2 887,293 + -0.2 887,293 + -1.3 887,293 + +1.3 887,293 + -1.3 887,293 + +1.0 887,396 + HGI48_RS04215 0.11 -0.5 887,419 + HGI48_RS04215 0.13 -1.6 887,443 + HGI48_RS04215 0.16 +0.1 887,443 + HGI48_RS04215 0.16 -1.9 887,443 + HGI48_RS04215 0.16 +1.4 887,444 - HGI48_RS04215 0.16 -0.5 887,444 - HGI48_RS04215 0.16 +0.2 887,563 + HGI48_RS04215 0.29 -0.1 887,573 + HGI48_RS04215 0.30 +0.6 887,574 - HGI48_RS04215 0.30 +0.8 887,574 - HGI48_RS04215 0.30 -0.4 887,574 - HGI48_RS04215 0.30 -0.9 887,578 - HGI48_RS04215 0.31 -1.5 887,607 + HGI48_RS04215 0.34 +0.8 887,608 - HGI48_RS04215 0.34 -2.1 887,608 - HGI48_RS04215 0.34 +0.3 887,608 - HGI48_RS04215 0.34 -1.1 887,608 - HGI48_RS04215 0.34 -1.1 887,626 - HGI48_RS04215 0.36 +0.5 887,626 - HGI48_RS04215 0.36 +1.1 887,626 - HGI48_RS04215 0.36 -1.4 887,662 + HGI48_RS04215 0.40 -2.3 887,662 + HGI48_RS04215 0.40 -0.2 887,662 + HGI48_RS04215 0.40 +0.3 887,662 + HGI48_RS04215 0.40 -0.9 887,663 - -0.5 887,680 + HGI48_RS04215 0.42 -0.5 887,705 - HGI48_RS04215 0.44 -0.3 887,705 - HGI48_RS04215 0.44 +0.3 887,750 + HGI48_RS04215 0.49 -1.5 887,751 - HGI48_RS04215 0.49 +1.3 887,772 + HGI48_RS04215 0.52 -1.1 887,772 + HGI48_RS04215 0.52 +0.1 887,772 + HGI48_RS04215 0.52 -0.5 887,773 - HGI48_RS04215 0.52 -0.8 887,783 + HGI48_RS04215 0.53 +0.7 887,783 + +0.1 887,783 + HGI48_RS04215 0.53 +0.1 887,783 + +2.1 887,783 + HGI48_RS04215 0.53 +0.7 887,783 + HGI48_RS04215 0.53 -1.3 887,783 + HGI48_RS04215 0.53 -1.3 887,783 + HGI48_RS04215 0.53 -0.2 887,784 - -0.5 887,784 - HGI48_RS04215 0.53 -0.9 887,784 - HGI48_RS04215 0.53 -2.3 887,784 - HGI48_RS04215 0.53 +0.3 887,784 - HGI48_RS04215 0.53 -0.5 887,784 - HGI48_RS04215 0.53 -1.3 887,821 + HGI48_RS04215 0.57 +0.1 887,822 - HGI48_RS04215 0.57 -0.6 887,822 - HGI48_RS04215 0.57 -1.3 887,822 - HGI48_RS04215 0.57 +1.1 887,844 + HGI48_RS04215 0.60 -0.2 887,845 - HGI48_RS04215 0.60 -1.5 887,885 + HGI48_RS04215 0.64 +1.1 887,886 - +0.5 887,886 - HGI48_RS04215 0.64 -2.3 887,886 - HGI48_RS04215 0.64 +1.1 887,888 - HGI48_RS04215 0.64 -0.3 887,914 - HGI48_RS04215 0.67 +0.2 887,942 + +0.5 887,943 - HGI48_RS04215 0.70 +0.2 887,943 - HGI48_RS04215 0.70 -0.3 887,993 + HGI48_RS04215 0.76 -0.9 887,994 - HGI48_RS04215 0.76 -1.3 887,994 - HGI48_RS04215 0.76 +0.1 887,994 - HGI48_RS04215 0.76 -1.9 888,004 - HGI48_RS04215 0.77 +0.9 888,128 + -2.3 888,166 - +0.2 888,166 - -1.3 888,177 + -0.9 888,177 + +0.6 888,231 - -2.3 888,262 + +0.0 888,262 + -1.0 888,263 - +1.0 888,304 - -0.1 888,309 - +1.0 888,347 + -0.1 888,348 - +1.8 888,348 - +0.0 888,369 - HGI48_RS04220 0.11 -2.1 888,369 - HGI48_RS04220 0.11 +0.4 888,370 + HGI48_RS04220 0.11 -0.2 888,370 + HGI48_RS04220 0.11 -1.3 888,467 + HGI48_RS04220 0.77 -0.5 888,474 - HGI48_RS04220 0.81 +0.4 888,552 + -1.3 888,553 - -1.3 888,612 - -0.5 888,636 - -1.2 888,781 - -1.4 888,790 - +0.0 888,819 + +0.7 888,838 - -0.5 888,991 + +4.7 889,014 + -1.1 889,017 + +0.3 889,030 + +0.2 889,040 + +0.2 889,066 - +0.0 889,183 + +0.6
Or see this region's nucleotide sequence