Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04180 and HGI48_RS04185 are separated by 337 nucleotides HGI48_RS04185 and HGI48_RS04190 are separated by 85 nucleotides HGI48_RS04190 and HGI48_RS04195 are separated by 67 nucleotides HGI48_RS04195 and HGI48_RS04200 overlap by 4 nucleotides
HGI48_RS04180: HGI48_RS04180 - DUF1330 domain-containing protein, at 882,746 to 883,066
_RS04180
HGI48_RS04185: HGI48_RS04185 - transposase, at 883,404 to 883,700
_RS04185
HGI48_RS04190: HGI48_RS04190 - transposase, at 883,786 to 884,160
_RS04190
HGI48_RS04195: HGI48_RS04195 - AAA family ATPase, at 884,228 to 885,010
_RS04195
HGI48_RS04200: HGI48_RS04200 - IS21 family transposase, at 885,007 to 886,030
_RS04200
Position (kb) 883
884
885 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 882.801 kb on - strand, within HGI48_RS04180 at 882.801 kb on - strand, within HGI48_RS04180 at 882.813 kb on - strand, within HGI48_RS04180 at 882.813 kb on - strand, within HGI48_RS04180 at 882.813 kb on - strand, within HGI48_RS04180 at 882.880 kb on + strand, within HGI48_RS04180 at 882.912 kb on + strand, within HGI48_RS04180 at 882.912 kb on + strand, within HGI48_RS04180 at 882.912 kb on + strand, within HGI48_RS04180 at 882.921 kb on + strand, within HGI48_RS04180 at 882.921 kb on + strand, within HGI48_RS04180 at 882.950 kb on - strand at 882.950 kb on - strand at 882.959 kb on + strand, within HGI48_RS04180 at 882.959 kb on + strand, within HGI48_RS04180 at 882.960 kb on - strand, within HGI48_RS04180 at 882.960 kb on - strand at 882.960 kb on - strand, within HGI48_RS04180 at 882.960 kb on - strand, within HGI48_RS04180 at 882.960 kb on - strand, within HGI48_RS04180 at 883.053 kb on + strand at 883.053 kb on + strand at 883.053 kb on + strand at 883.054 kb on - strand at 883.064 kb on + strand at 883.065 kb on - strand at 883.131 kb on - strand at 883.131 kb on - strand at 883.211 kb on + strand at 883.211 kb on + strand at 883.211 kb on + strand at 883.211 kb on + strand at 883.211 kb on + strand at 883.212 kb on - strand at 883.212 kb on - strand at 883.212 kb on - strand at 883.212 kb on - strand at 883.212 kb on - strand at 883.212 kb on - strand at 883.212 kb on - strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.263 kb on - strand at 883.263 kb on - strand at 883.263 kb on - strand at 883.263 kb on - strand at 883.271 kb on - strand at 883.335 kb on + strand at 883.335 kb on + strand at 883.336 kb on - strand at 883.336 kb on - strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.338 kb on - strand at 883.345 kb on + strand at 883.385 kb on + strand at 883.406 kb on - strand at 883.406 kb on - strand at 883.419 kb on - strand at 883.419 kb on - strand at 883.419 kb on - strand at 883.496 kb on + strand, within HGI48_RS04185 at 883.497 kb on - strand, within HGI48_RS04185 at 883.497 kb on - strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand at 883.503 kb on + strand, within HGI48_RS04185 at 883.503 kb on + strand, within HGI48_RS04185 at 883.503 kb on + strand, within HGI48_RS04185 at 883.503 kb on + strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.605 kb on - strand, within HGI48_RS04185 at 883.710 kb on - strand at 883.895 kb on - strand, within HGI48_RS04190 at 883.966 kb on - strand, within HGI48_RS04190 at 883.966 kb on - strand at 884.022 kb on - strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.026 kb on - strand, within HGI48_RS04190 at 884.133 kb on + strand at 884.133 kb on + strand at 884.137 kb on + strand at 884.137 kb on + strand at 884.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 882,801 - HGI48_RS04180 0.17 -1.3 882,801 - HGI48_RS04180 0.17 -2.1 882,813 - HGI48_RS04180 0.21 -0.9 882,813 - HGI48_RS04180 0.21 +0.0 882,813 - HGI48_RS04180 0.21 +0.1 882,880 + HGI48_RS04180 0.42 +1.3 882,912 + HGI48_RS04180 0.52 -0.8 882,912 + HGI48_RS04180 0.52 -0.9 882,912 + HGI48_RS04180 0.52 -0.9 882,921 + HGI48_RS04180 0.55 +0.2 882,921 + HGI48_RS04180 0.55 -0.2 882,950 - +2.1 882,950 - +0.1 882,959 + HGI48_RS04180 0.66 +1.4 882,959 + HGI48_RS04180 0.66 -0.9 882,960 - HGI48_RS04180 0.67 -0.0 882,960 - +1.1 882,960 - HGI48_RS04180 0.67 -0.9 882,960 - HGI48_RS04180 0.67 -0.5 882,960 - HGI48_RS04180 0.67 -0.7 883,053 + -1.5 883,053 + -0.7 883,053 + +0.1 883,054 - -0.5 883,064 + -0.9 883,065 - -0.5 883,131 - +1.1 883,131 - -0.9 883,211 + +0.3 883,211 + +1.4 883,211 + +1.7 883,211 + -1.3 883,211 + -1.7 883,212 - -1.4 883,212 - +1.8 883,212 - -2.5 883,212 - -0.8 883,212 - +1.7 883,212 - +0.3 883,212 - +0.1 883,262 + +0.8 883,262 + +0.7 883,262 + -0.3 883,262 + -2.1 883,262 + -1.8 883,262 + -0.8 883,262 + +0.1 883,263 - -0.5 883,263 - -0.2 883,263 - +1.2 883,263 - -0.8 883,271 - +2.2 883,335 + +0.6 883,335 + -0.5 883,336 - -0.9 883,336 - +1.1 883,337 + +0.1 883,337 + +0.1 883,337 + +1.1 883,337 + -0.9 883,337 + -0.9 883,338 - -0.9 883,345 + -0.4 883,385 + -0.8 883,406 - -0.5 883,406 - -0.5 883,419 - -0.8 883,419 - +0.9 883,419 - +0.5 883,496 + HGI48_RS04185 0.31 +0.1 883,497 - HGI48_RS04185 0.31 +0.9 883,497 - HGI48_RS04185 0.31 +1.6 883,498 + HGI48_RS04185 0.32 -1.5 883,498 + HGI48_RS04185 0.32 +1.0 883,498 + HGI48_RS04185 0.32 -1.5 883,498 + HGI48_RS04185 0.32 -0.5 883,498 + HGI48_RS04185 0.32 +1.1 883,498 + HGI48_RS04185 0.32 -0.6 883,498 + HGI48_RS04185 0.32 +0.2 883,498 + HGI48_RS04185 0.32 -0.6 883,499 - HGI48_RS04185 0.32 +1.7 883,499 - HGI48_RS04185 0.32 +0.2 883,499 - +0.1 883,499 - HGI48_RS04185 0.32 -0.1 883,499 - HGI48_RS04185 0.32 -1.3 883,499 - +4.2 883,503 + HGI48_RS04185 0.33 -0.9 883,503 + HGI48_RS04185 0.33 -0.9 883,503 + HGI48_RS04185 0.33 +0.8 883,503 + HGI48_RS04185 0.33 -1.3 883,504 - HGI48_RS04185 0.34 +0.2 883,504 - HGI48_RS04185 0.34 -0.4 883,504 - HGI48_RS04185 0.34 +0.7 883,504 - HGI48_RS04185 0.34 -0.5 883,504 - HGI48_RS04185 0.34 +0.1 883,605 - HGI48_RS04185 0.68 -0.5 883,710 - +1.1 883,895 - HGI48_RS04190 0.29 -0.3 883,966 - HGI48_RS04190 0.48 -0.5 883,966 - +1.1 884,022 - HGI48_RS04190 0.63 -1.8 884,025 + HGI48_RS04190 0.64 -0.3 884,025 + +0.1 884,025 + HGI48_RS04190 0.64 -1.1 884,025 + -0.5 884,025 + HGI48_RS04190 0.64 -0.5 884,025 + HGI48_RS04190 0.64 +0.8 884,025 + HGI48_RS04190 0.64 +0.5 884,025 + HGI48_RS04190 0.64 -0.1 884,026 - HGI48_RS04190 0.64 +1.9 884,133 + -0.5 884,133 + -1.3 884,137 + +1.4 884,137 + +0.1 884,190 - -2.3
Or see this region's nucleotide sequence