Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02715 and HGI48_RS02720 are separated by 21 nucleotides HGI48_RS02720 and HGI48_RS02725 are separated by 53 nucleotides HGI48_RS02725 and HGI48_RS02730 are separated by 129 nucleotides HGI48_RS02730 and HGI48_RS02735 are separated by 109 nucleotides
HGI48_RS02715: HGI48_RS02715 - chorismate lyase, at 587,105 to 587,620
_RS02715
HGI48_RS02720: HGI48_RS02720 - 4-hydroxybenzoate octaprenyltransferase, at 587,642 to 588,505
_RS02720
HGI48_RS02725: HGI48_RS02725 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 588,559 to 591,042
_RS02725
HGI48_RS02730: HGI48_RS02730 - diacylglycerol kinase, at 591,172 to 591,537
_RS02730
HGI48_RS02735: HGI48_RS02735 - repressor LexA, at 591,647 to 592,258
_RS02735
Position (kb) 588
589
590
591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 587.594 kb on + strand at 587.594 kb on + strand at 588.503 kb on + strand at 588.504 kb on - strand at 588.527 kb on - strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.565 kb on + strand at 588.566 kb on - strand at 588.566 kb on - strand at 588.566 kb on - strand at 588.566 kb on - strand at 591.101 kb on + strand at 591.156 kb on + strand at 591.167 kb on + strand at 591.168 kb on - strand at 591.199 kb on - strand at 591.297 kb on + strand, within HGI48_RS02730 at 591.301 kb on - strand, within HGI48_RS02730 at 591.427 kb on + strand, within HGI48_RS02730 at 591.473 kb on + strand, within HGI48_RS02730 at 591.548 kb on - strand at 591.605 kb on + strand at 591.606 kb on - strand at 591.606 kb on - strand at 591.606 kb on - strand at 591.606 kb on - strand at 591.607 kb on + strand at 591.608 kb on - strand at 591.608 kb on - strand at 591.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 587,594 + -1.7 587,594 + +0.8 588,503 + -1.0 588,504 - -0.3 588,527 - +0.1 588,565 + +0.1 588,565 + +0.1 588,565 + -1.3 588,565 + +0.3 588,566 - +0.1 588,566 - -1.3 588,566 - -1.5 588,566 - -2.1 591,101 + +0.6 591,156 + +1.7 591,167 + +0.8 591,168 - +0.8 591,199 - -1.2 591,297 + HGI48_RS02730 0.34 +0.8 591,301 - HGI48_RS02730 0.35 +0.4 591,427 + HGI48_RS02730 0.70 +1.3 591,473 + HGI48_RS02730 0.82 -0.9 591,548 - -0.5 591,605 + +0.2 591,606 - -1.2 591,606 - +0.1 591,606 - -0.9 591,606 - +0.5 591,607 + -0.2 591,608 - -0.9 591,608 - -1.2 591,608 - -0.5
Or see this region's nucleotide sequence