Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02330 and HGI48_RS02335 are separated by 716 nucleotides HGI48_RS02335 and HGI48_RS02340 are separated by 494 nucleotides
HGI48_RS02330: HGI48_RS02330 - hypothetical protein, at 505,830 to 506,558
_RS02330
HGI48_RS02335: HGI48_RS02335 - DUF1440 domain-containing protein, at 507,275 to 507,817
_RS02335
HGI48_RS02340: HGI48_RS02340 - FAD-dependent 2-octaprenylphenol hydroxylase, at 508,312 to 509,523
_RS02340
Position (kb) 507
508 Strain fitness (log2 ratio) -2
-1
0
1
2 at 506.309 kb on + strand, within HGI48_RS02330 at 506.358 kb on - strand, within HGI48_RS02330 at 506.360 kb on + strand, within HGI48_RS02330 at 506.360 kb on + strand, within HGI48_RS02330 at 506.361 kb on - strand, within HGI48_RS02330 at 506.387 kb on - strand, within HGI48_RS02330 at 506.496 kb on + strand at 506.555 kb on - strand at 506.559 kb on - strand at 506.596 kb on - strand at 506.628 kb on - strand at 506.648 kb on - strand at 506.661 kb on + strand at 506.947 kb on - strand at 507.001 kb on + strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.024 kb on + strand at 507.025 kb on - strand at 507.038 kb on - strand at 507.081 kb on + strand at 507.169 kb on + strand at 507.169 kb on + strand at 507.170 kb on - strand at 507.211 kb on + strand at 507.211 kb on + strand at 507.212 kb on - strand at 507.212 kb on - strand at 507.302 kb on - strand at 507.302 kb on - strand at 507.322 kb on + strand at 507.376 kb on + strand, within HGI48_RS02335 at 507.376 kb on + strand, within HGI48_RS02335 at 507.376 kb on + strand, within HGI48_RS02335 at 507.376 kb on + strand, within HGI48_RS02335 at 507.376 kb on + strand, within HGI48_RS02335 at 507.376 kb on + strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.377 kb on - strand, within HGI48_RS02335 at 507.544 kb on - strand, within HGI48_RS02335 at 507.544 kb on - strand at 507.553 kb on + strand, within HGI48_RS02335 at 507.554 kb on - strand, within HGI48_RS02335 at 507.559 kb on + strand, within HGI48_RS02335 at 507.621 kb on + strand, within HGI48_RS02335 at 507.621 kb on + strand, within HGI48_RS02335 at 507.622 kb on - strand at 507.622 kb on - strand, within HGI48_RS02335 at 507.665 kb on + strand, within HGI48_RS02335 at 507.666 kb on - strand, within HGI48_RS02335 at 507.666 kb on - strand, within HGI48_RS02335 at 507.865 kb on - strand at 507.952 kb on + strand at 508.019 kb on + strand at 508.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 506,309 + HGI48_RS02330 0.66 -1.2 506,358 - HGI48_RS02330 0.72 +0.5 506,360 + HGI48_RS02330 0.73 -1.5 506,360 + HGI48_RS02330 0.73 -1.2 506,361 - HGI48_RS02330 0.73 -1.1 506,387 - HGI48_RS02330 0.76 -0.1 506,496 + -0.9 506,555 - +0.2 506,559 - -0.2 506,596 - -0.2 506,628 - +0.8 506,648 - -1.1 506,661 + +0.7 506,947 - +0.1 507,001 + +0.1 507,024 + -1.2 507,024 + +1.5 507,024 + -0.2 507,025 - -0.3 507,038 - -1.4 507,081 + +0.4 507,169 + -0.3 507,169 + -2.7 507,170 - -0.6 507,211 + -1.2 507,211 + +0.1 507,212 - +0.4 507,212 - -2.2 507,302 - +0.7 507,302 - -0.3 507,322 + +1.7 507,376 + HGI48_RS02335 0.19 -0.9 507,376 + HGI48_RS02335 0.19 -0.7 507,376 + HGI48_RS02335 0.19 +1.7 507,376 + HGI48_RS02335 0.19 -0.6 507,376 + HGI48_RS02335 0.19 -0.8 507,376 + HGI48_RS02335 0.19 -1.5 507,377 - HGI48_RS02335 0.19 +0.1 507,377 - HGI48_RS02335 0.19 +0.1 507,377 - HGI48_RS02335 0.19 -1.5 507,377 - HGI48_RS02335 0.19 -0.9 507,377 - HGI48_RS02335 0.19 -0.2 507,377 - HGI48_RS02335 0.19 -1.5 507,377 - HGI48_RS02335 0.19 +1.1 507,377 - HGI48_RS02335 0.19 -0.2 507,377 - HGI48_RS02335 0.19 +1.7 507,377 - HGI48_RS02335 0.19 +0.4 507,377 - HGI48_RS02335 0.19 +0.6 507,377 - HGI48_RS02335 0.19 -1.5 507,544 - HGI48_RS02335 0.50 -0.5 507,544 - +1.1 507,553 + HGI48_RS02335 0.51 -0.2 507,554 - HGI48_RS02335 0.51 +0.4 507,559 + HGI48_RS02335 0.52 +1.8 507,621 + HGI48_RS02335 0.64 -1.0 507,621 + HGI48_RS02335 0.64 -1.4 507,622 - +1.1 507,622 - HGI48_RS02335 0.64 +0.1 507,665 + HGI48_RS02335 0.72 -0.1 507,666 - HGI48_RS02335 0.72 +0.5 507,666 - HGI48_RS02335 0.72 -0.5 507,865 - +0.7 507,952 + +0.4 508,019 + +2.7 508,102 - -1.3
Or see this region's nucleotide sequence