Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01560 and HGI48_RS01565 are separated by 717 nucleotides HGI48_RS01565 and HGI48_RS01570 are separated by 93 nucleotides
HGI48_RS01560: HGI48_RS01560 - glutamate synthase large subunit, at 340,440 to 344,900
_RS01560
HGI48_RS01565: HGI48_RS01565 - TIGR01212 family radical SAM protein, at 345,618 to 346,547
_RS01565
HGI48_RS01570: HGI48_RS01570 - aerobic respiration two-component sensor histidine kinase ArcB, at 346,641 to 348,980
_RS01570
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.659 kb on + strand at 344.730 kb on + strand at 344.730 kb on + strand at 344.730 kb on + strand at 344.731 kb on - strand at 344.731 kb on - strand at 344.731 kb on - strand at 344.822 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.841 kb on + strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.842 kb on - strand at 344.893 kb on + strand at 344.893 kb on + strand at 344.893 kb on + strand at 344.894 kb on - strand at 344.894 kb on - strand at 344.894 kb on - strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.900 kb on + strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.901 kb on - strand at 344.927 kb on + strand at 344.927 kb on + strand at 344.928 kb on - strand at 344.928 kb on - strand at 344.928 kb on - strand at 344.971 kb on + strand at 344.974 kb on + strand at 344.974 kb on + strand at 344.974 kb on + strand at 344.974 kb on + strand at 345.057 kb on + strand at 345.071 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.126 kb on + strand at 345.127 kb on - strand at 345.127 kb on - strand at 345.130 kb on + strand at 345.130 kb on + strand at 345.131 kb on - strand at 345.131 kb on - strand at 345.227 kb on + strand at 345.236 kb on + strand at 345.323 kb on + strand at 345.323 kb on + strand at 345.335 kb on - strand at 345.335 kb on - strand at 345.335 kb on - strand at 345.387 kb on + strand at 345.387 kb on + strand at 345.387 kb on + strand at 345.388 kb on - strand at 345.415 kb on + strand at 345.468 kb on + strand at 345.478 kb on + strand at 345.530 kb on + strand at 345.530 kb on + strand at 345.531 kb on - strand at 345.532 kb on + strand at 345.584 kb on + strand at 345.597 kb on + strand at 345.634 kb on + strand at 345.634 kb on + strand at 345.635 kb on - strand at 345.642 kb on - strand at 345.642 kb on - strand at 345.697 kb on + strand at 345.698 kb on - strand at 345.710 kb on + strand at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.711 kb on - strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.752 kb on + strand, within HGI48_RS01565 at 345.753 kb on - strand at 345.753 kb on - strand at 345.753 kb on - strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.876 kb on + strand, within HGI48_RS01565 at 345.877 kb on - strand, within HGI48_RS01565 at 345.878 kb on + strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.879 kb on - strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand at 345.888 kb on + strand, within HGI48_RS01565 at 345.888 kb on + strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.889 kb on - strand, within HGI48_RS01565 at 345.918 kb on + strand, within HGI48_RS01565 at 346.014 kb on + strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.030 kb on - strand, within HGI48_RS01565 at 346.114 kb on - strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand at 346.156 kb on + strand, within HGI48_RS01565 at 346.156 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.285 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.338 kb on + strand, within HGI48_RS01565 at 346.339 kb on - strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.389 kb on + strand, within HGI48_RS01565 at 346.390 kb on - strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.397 kb on + strand, within HGI48_RS01565 at 346.398 kb on - strand at 346.482 kb on + strand at 346.482 kb on + strand at 346.483 kb on - strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.545 kb on + strand at 346.546 kb on - strand at 346.582 kb on - strand at 346.602 kb on - strand at 346.621 kb on + strand at 346.622 kb on - strand at 346.622 kb on - strand at 346.627 kb on + strand at 346.671 kb on + strand at 346.671 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.681 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 346.851 kb on + strand at 347.197 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.322 kb on + strand, within HGI48_RS01570 at 347.323 kb on - strand, within HGI48_RS01570 at 347.397 kb on - strand, within HGI48_RS01570 at 347.439 kb on - strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.447 kb on + strand, within HGI48_RS01570 at 347.534 kb on + strand, within HGI48_RS01570 at 347.535 kb on - strand, within HGI48_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 344,659 + +0.2 344,730 + -1.0 344,730 + +0.2 344,730 + +0.7 344,731 - -0.8 344,731 - +0.0 344,731 - +1.5 344,822 + -0.7 344,841 + -1.2 344,841 + -1.8 344,841 + +0.8 344,841 + -1.7 344,841 + +0.0 344,841 + -0.8 344,841 + -2.0 344,841 + -0.6 344,841 + -0.4 344,841 + -2.4 344,841 + -0.4 344,841 + +1.2 344,841 + +1.2 344,841 + -0.8 344,842 - +0.3 344,842 - +2.0 344,842 - -0.6 344,842 - +1.2 344,842 - -1.7 344,842 - -0.8 344,842 - +0.6 344,842 - +1.3 344,842 - -0.1 344,842 - -0.2 344,842 - -0.4 344,842 - +1.2 344,842 - -0.4 344,893 + -0.4 344,893 + -2.0 344,893 + -2.2 344,894 - +2.2 344,894 - -0.8 344,894 - +1.6 344,900 + -1.7 344,900 + -0.5 344,900 + +0.4 344,900 + -1.5 344,900 + -1.7 344,900 + -0.4 344,901 - -1.0 344,901 - +1.3 344,901 - +0.9 344,901 - +0.2 344,901 - -1.2 344,901 - +0.2 344,927 + -0.2 344,927 + +1.5 344,928 - +1.5 344,928 - +1.2 344,928 - +0.0 344,971 + +1.6 344,974 + +0.9 344,974 + -1.8 344,974 + -0.4 344,974 + -0.8 345,057 + -0.8 345,071 + -0.6 345,126 + +0.2 345,126 + -0.4 345,126 + +0.6 345,126 + -1.5 345,126 + -0.3 345,126 + -0.7 345,126 + -1.7 345,126 + -0.3 345,126 + -1.2 345,127 - -2.3 345,127 - -0.3 345,130 + -0.9 345,130 + +0.2 345,131 - -0.2 345,131 - +1.4 345,227 + -0.6 345,236 + +0.2 345,323 + +2.2 345,323 + -1.0 345,335 - -0.7 345,335 - -0.4 345,335 - +0.0 345,387 + -1.8 345,387 + -0.7 345,387 + +2.2 345,388 - -0.7 345,415 + -0.0 345,468 + -0.8 345,478 + -1.2 345,530 + +0.1 345,530 + -0.3 345,531 - -0.4 345,532 + +1.2 345,584 + -1.2 345,597 + -0.6 345,634 + -1.0 345,634 + -1.3 345,635 - -1.2 345,642 - -1.0 345,642 - +0.7 345,697 + -0.2 345,698 - +1.5 345,710 + +0.2 345,711 - HGI48_RS01565 0.10 -0.1 345,711 - HGI48_RS01565 0.10 -1.7 345,711 - HGI48_RS01565 0.10 -0.7 345,752 + HGI48_RS01565 0.14 +0.3 345,752 + HGI48_RS01565 0.14 -1.2 345,753 - +1.2 345,753 - +1.2 345,753 - HGI48_RS01565 0.15 -0.7 345,876 + HGI48_RS01565 0.28 +0.7 345,876 + HGI48_RS01565 0.28 +0.3 345,876 + HGI48_RS01565 0.28 -0.8 345,876 + HGI48_RS01565 0.28 -1.1 345,877 - HGI48_RS01565 0.28 +0.8 345,878 + HGI48_RS01565 0.28 -1.2 345,879 - HGI48_RS01565 0.28 -1.7 345,879 - HGI48_RS01565 0.28 +0.6 345,879 - HGI48_RS01565 0.28 -0.7 345,888 + HGI48_RS01565 0.29 -0.8 345,888 + HGI48_RS01565 0.29 -0.2 345,888 + +1.2 345,888 + HGI48_RS01565 0.29 +1.8 345,888 + HGI48_RS01565 0.29 -1.2 345,889 - HGI48_RS01565 0.29 +0.3 345,889 - HGI48_RS01565 0.29 +0.6 345,918 + HGI48_RS01565 0.32 -0.3 346,014 + HGI48_RS01565 0.43 -0.2 346,030 - HGI48_RS01565 0.44 +0.0 346,030 - HGI48_RS01565 0.44 +0.4 346,030 - HGI48_RS01565 0.44 +0.2 346,114 - HGI48_RS01565 0.53 -0.1 346,156 + HGI48_RS01565 0.58 +0.7 346,156 + +1.9 346,156 + HGI48_RS01565 0.58 -0.8 346,156 + HGI48_RS01565 0.58 +0.7 346,285 + HGI48_RS01565 0.72 +0.2 346,285 + HGI48_RS01565 0.72 -1.2 346,285 + HGI48_RS01565 0.72 -1.2 346,285 + HGI48_RS01565 0.72 +0.4 346,285 + HGI48_RS01565 0.72 +1.7 346,338 + HGI48_RS01565 0.77 -0.4 346,338 + HGI48_RS01565 0.77 +0.2 346,339 - HGI48_RS01565 0.78 -1.2 346,389 + HGI48_RS01565 0.83 +0.5 346,389 + HGI48_RS01565 0.83 +0.7 346,390 - HGI48_RS01565 0.83 +0.3 346,397 + HGI48_RS01565 0.84 -0.0 346,397 + HGI48_RS01565 0.84 -0.2 346,398 - -0.4 346,482 + +1.2 346,482 + +0.3 346,483 - +0.9 346,545 + +1.6 346,545 + +1.0 346,545 + +0.2 346,545 + +1.5 346,545 + +0.2 346,546 - +1.4 346,582 - +1.3 346,602 - +0.1 346,621 + +1.2 346,622 - -0.3 346,622 - -1.3 346,627 + -0.5 346,671 + -0.6 346,671 + +1.9 346,681 + -0.8 346,681 + -1.1 346,681 + -2.2 346,851 + -0.8 346,851 + +0.2 346,851 + +0.4 347,197 + HGI48_RS01570 0.24 -1.1 347,322 + HGI48_RS01570 0.29 -0.4 347,322 + HGI48_RS01570 0.29 -0.2 347,323 - HGI48_RS01570 0.29 +0.7 347,397 - HGI48_RS01570 0.32 -1.9 347,439 - HGI48_RS01570 0.34 -1.2 347,447 + HGI48_RS01570 0.34 -0.9 347,447 + HGI48_RS01570 0.34 -1.2 347,534 + HGI48_RS01570 0.38 -0.2 347,535 - HGI48_RS01570 0.38 -0.3
Or see this region's nucleotide sequence