Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00825 and HGI48_RS00830 are separated by 289 nucleotides HGI48_RS00830 and HGI48_RS00835 are separated by 234 nucleotides
HGI48_RS00825: HGI48_RS00825 - dienelactone hydrolase family protein, at 188,384 to 189,211
_RS00825
HGI48_RS00830: HGI48_RS00830 - uridine phosphorylase, at 189,501 to 190,262
_RS00830
HGI48_RS00835: HGI48_RS00835 - tyrosine-protein phosphatase, at 190,497 to 191,279
_RS00835
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.724 kb on + strand, within HGI48_RS00825 at 188.795 kb on + strand, within HGI48_RS00825 at 188.796 kb on - strand, within HGI48_RS00825 at 188.889 kb on + strand, within HGI48_RS00825 at 188.916 kb on + strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.917 kb on - strand, within HGI48_RS00825 at 188.941 kb on - strand, within HGI48_RS00825 at 188.951 kb on - strand, within HGI48_RS00825 at 188.978 kb on - strand, within HGI48_RS00825 at 188.988 kb on - strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.057 kb on + strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.058 kb on - strand, within HGI48_RS00825 at 189.125 kb on - strand, within HGI48_RS00825 at 189.194 kb on + strand at 189.194 kb on + strand at 189.194 kb on + strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.195 kb on - strand at 189.223 kb on + strand at 189.278 kb on + strand at 189.290 kb on - strand at 189.290 kb on - strand at 189.290 kb on - strand at 189.290 kb on - strand at 189.294 kb on + strand at 189.294 kb on + strand at 189.294 kb on + strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.295 kb on - strand at 189.317 kb on + strand at 189.317 kb on + strand at 189.318 kb on - strand at 189.318 kb on - strand at 189.361 kb on + strand at 189.361 kb on + strand at 189.361 kb on + strand at 189.379 kb on + strand at 189.413 kb on + strand at 189.442 kb on - strand at 189.442 kb on - strand at 189.500 kb on + strand at 189.500 kb on + strand at 189.500 kb on + strand at 189.501 kb on - strand at 189.501 kb on - strand at 189.511 kb on + strand at 189.512 kb on - strand at 189.512 kb on - strand at 189.526 kb on + strand at 189.541 kb on + strand at 189.542 kb on - strand at 189.542 kb on - strand at 189.902 kb on + strand, within HGI48_RS00830 at 189.902 kb on + strand, within HGI48_RS00830 at 189.903 kb on - strand, within HGI48_RS00830 at 190.000 kb on - strand, within HGI48_RS00830 at 190.008 kb on + strand, within HGI48_RS00830 at 190.008 kb on + strand, within HGI48_RS00830 at 190.077 kb on + strand, within HGI48_RS00830 at 190.077 kb on + strand, within HGI48_RS00830 at 190.077 kb on + strand, within HGI48_RS00830 at 190.078 kb on - strand, within HGI48_RS00830 at 190.112 kb on + strand, within HGI48_RS00830 at 190.112 kb on + strand, within HGI48_RS00830 at 190.113 kb on - strand, within HGI48_RS00830 at 190.113 kb on - strand at 190.113 kb on - strand, within HGI48_RS00830 at 190.317 kb on + strand at 190.317 kb on + strand at 190.318 kb on - strand at 190.318 kb on - strand at 190.374 kb on + strand at 190.374 kb on + strand at 190.374 kb on + strand at 190.375 kb on - strand at 190.375 kb on - strand at 190.379 kb on + strand at 190.379 kb on + strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.380 kb on - strand at 190.395 kb on + strand at 190.399 kb on - strand at 190.399 kb on - strand at 190.399 kb on - strand at 190.431 kb on - strand at 190.437 kb on - strand at 190.453 kb on + strand at 190.454 kb on - strand at 190.468 kb on - strand at 190.478 kb on + strand at 190.478 kb on + strand at 190.478 kb on + strand at 190.478 kb on + strand at 190.479 kb on - strand at 190.479 kb on - strand at 190.479 kb on - strand at 190.479 kb on - strand at 190.480 kb on + strand at 190.480 kb on + strand at 190.480 kb on + strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.481 kb on - strand at 190.484 kb on + strand at 190.484 kb on + strand at 190.485 kb on - strand at 190.514 kb on - strand at 190.514 kb on - strand at 190.753 kb on - strand, within HGI48_RS00835 at 190.850 kb on + strand, within HGI48_RS00835 at 190.850 kb on + strand, within HGI48_RS00835 at 190.851 kb on - strand, within HGI48_RS00835 at 190.851 kb on - strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.038 kb on - strand, within HGI48_RS00835 at 191.177 kb on + strand at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.180 kb on + strand at 191.180 kb on + strand, within HGI48_RS00835
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 188,724 + HGI48_RS00825 0.41 -2.3 188,795 + HGI48_RS00825 0.50 +2.0 188,796 - HGI48_RS00825 0.50 +0.2 188,889 + HGI48_RS00825 0.61 -0.2 188,916 + HGI48_RS00825 0.64 +0.8 188,917 - HGI48_RS00825 0.64 +1.2 188,917 - HGI48_RS00825 0.64 -0.7 188,917 - HGI48_RS00825 0.64 +0.7 188,941 - HGI48_RS00825 0.67 -0.8 188,951 - HGI48_RS00825 0.68 -2.7 188,978 - HGI48_RS00825 0.72 -0.0 188,988 - HGI48_RS00825 0.73 -0.8 189,057 + HGI48_RS00825 0.81 +0.2 189,057 + HGI48_RS00825 0.81 -0.6 189,057 + HGI48_RS00825 0.81 -1.6 189,057 + HGI48_RS00825 0.81 +0.2 189,057 + HGI48_RS00825 0.81 -0.5 189,057 + HGI48_RS00825 0.81 +0.7 189,058 - HGI48_RS00825 0.81 -2.0 189,058 - HGI48_RS00825 0.81 +1.2 189,058 - HGI48_RS00825 0.81 -1.4 189,058 - HGI48_RS00825 0.81 +0.6 189,058 - HGI48_RS00825 0.81 +0.7 189,058 - HGI48_RS00825 0.81 -0.5 189,058 - HGI48_RS00825 0.81 +0.2 189,125 - HGI48_RS00825 0.89 +0.9 189,194 + -0.4 189,194 + -0.3 189,194 + +0.5 189,195 - +0.7 189,195 - -1.2 189,195 - +1.2 189,195 - -1.3 189,195 - -2.0 189,223 + -0.1 189,278 + +0.6 189,290 - +0.2 189,290 - -0.4 189,290 - -0.4 189,290 - -0.1 189,294 + -0.4 189,294 + -0.4 189,294 + -1.2 189,295 - +0.7 189,295 - -0.4 189,295 - -0.2 189,295 - +1.4 189,295 - -0.6 189,317 + -0.4 189,317 + +2.7 189,318 - +0.9 189,318 - +0.4 189,361 + +1.3 189,361 + -0.1 189,361 + -2.5 189,379 + -2.0 189,413 + +1.0 189,442 - +0.2 189,442 - -0.4 189,500 + -0.9 189,500 + +0.2 189,500 + +0.0 189,501 - -0.3 189,501 - -0.4 189,511 + -0.8 189,512 - -0.4 189,512 - -0.2 189,526 + -0.3 189,541 + +1.2 189,542 - +0.8 189,542 - -1.2 189,902 + HGI48_RS00830 0.53 +1.2 189,902 + HGI48_RS00830 0.53 -1.2 189,903 - HGI48_RS00830 0.53 -0.0 190,000 - HGI48_RS00830 0.65 -1.2 190,008 + HGI48_RS00830 0.67 +0.2 190,008 + HGI48_RS00830 0.67 +0.6 190,077 + HGI48_RS00830 0.76 +1.4 190,077 + HGI48_RS00830 0.76 -0.8 190,077 + HGI48_RS00830 0.76 -0.6 190,078 - HGI48_RS00830 0.76 +0.2 190,112 + HGI48_RS00830 0.80 +0.2 190,112 + HGI48_RS00830 0.80 +0.4 190,113 - HGI48_RS00830 0.80 +0.8 190,113 - -0.4 190,113 - HGI48_RS00830 0.80 -1.2 190,317 + -0.2 190,317 + -0.3 190,318 - -1.2 190,318 - -1.4 190,374 + +0.7 190,374 + -1.4 190,374 + +0.2 190,375 - -0.1 190,375 - -0.1 190,379 + +0.0 190,379 + -0.6 190,380 - +0.6 190,380 - -0.4 190,380 - -0.2 190,380 - -0.4 190,380 - +2.2 190,395 + +1.9 190,399 - -1.6 190,399 - +0.8 190,399 - -0.5 190,431 - +0.2 190,437 - +0.2 190,453 + +1.2 190,454 - +1.7 190,468 - -1.6 190,478 + -0.8 190,478 + -1.0 190,478 + -0.8 190,478 + -0.2 190,479 - -0.8 190,479 - -2.7 190,479 - +1.2 190,479 - +0.9 190,480 + -0.3 190,480 + -0.3 190,480 + +1.4 190,481 - +0.4 190,481 - -0.4 190,481 - +0.7 190,481 - -0.8 190,481 - -0.2 190,481 - -1.8 190,484 + +0.5 190,484 + +0.6 190,485 - +1.5 190,514 - +0.6 190,514 - -0.3 190,753 - HGI48_RS00835 0.33 -0.9 190,850 + HGI48_RS00835 0.45 -0.7 190,850 + HGI48_RS00835 0.45 +1.0 190,851 - HGI48_RS00835 0.45 -1.8 190,851 - HGI48_RS00835 0.45 +1.2 191,037 + HGI48_RS00835 0.69 +0.7 191,037 + HGI48_RS00835 0.69 +0.1 191,037 + HGI48_RS00835 0.69 -1.0 191,038 - HGI48_RS00835 0.69 +0.5 191,177 + -0.4 191,177 + HGI48_RS00835 0.87 +1.0 191,177 + HGI48_RS00835 0.87 -1.0 191,177 + HGI48_RS00835 0.87 -1.2 191,177 + HGI48_RS00835 0.87 +0.7 191,177 + HGI48_RS00835 0.87 +0.4 191,177 + HGI48_RS00835 0.87 -1.1 191,177 + HGI48_RS00835 0.87 -0.4 191,178 - HGI48_RS00835 0.87 +0.4 191,178 - HGI48_RS00835 0.87 +0.7 191,178 - HGI48_RS00835 0.87 +0.4 191,180 + +1.2 191,180 + HGI48_RS00835 0.87 +0.2
Or see this region's nucleotide sequence