Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00610 and HGI48_RS00615 overlap by 8 nucleotides HGI48_RS00615 and HGI48_RS00620 overlap by 19 nucleotides
HGI48_RS00610: HGI48_RS00610 - TolC family protein, at 144,640 to 146,121
_RS00610
HGI48_RS00615: HGI48_RS00615 - HlyD family efflux transporter periplasmic adaptor subunit, at 146,114 to 147,376
_RS00615
HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326
_RS00620
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 145.182 kb on + strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.200 kb on + strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.445 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand at 145.568 kb on - strand at 145.568 kb on - strand at 145.605 kb on - strand, within HGI48_RS00610 at 145.605 kb on - strand, within HGI48_RS00610 at 145.623 kb on + strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610 at 145.683 kb on + strand, within HGI48_RS00610 at 145.683 kb on + strand, within HGI48_RS00610 at 145.684 kb on - strand, within HGI48_RS00610 at 145.684 kb on - strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.717 kb on + strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand, within HGI48_RS00610 at 145.718 kb on - strand at 145.859 kb on + strand, within HGI48_RS00610 at 146.044 kb on + strand at 146.044 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.046 kb on + strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.047 kb on - strand at 146.119 kb on + strand at 146.120 kb on - strand at 146.311 kb on + strand, within HGI48_RS00615 at 146.311 kb on + strand, within HGI48_RS00615 at 146.311 kb on + strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.312 kb on - strand, within HGI48_RS00615 at 146.358 kb on + strand, within HGI48_RS00615 at 146.358 kb on + strand at 146.359 kb on - strand at 146.359 kb on - strand, within HGI48_RS00615 at 146.359 kb on - strand, within HGI48_RS00615 at 146.398 kb on + strand, within HGI48_RS00615 at 146.398 kb on + strand, within HGI48_RS00615 at 146.399 kb on - strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.456 kb on - strand at 146.456 kb on - strand, within HGI48_RS00615 at 146.456 kb on - strand, within HGI48_RS00615 at 146.456 kb on - strand, within HGI48_RS00615 at 146.460 kb on + strand, within HGI48_RS00615 at 146.498 kb on - strand at 146.498 kb on - strand, within HGI48_RS00615 at 146.508 kb on + strand, within HGI48_RS00615 at 146.509 kb on - strand, within HGI48_RS00615 at 146.571 kb on + strand, within HGI48_RS00615 at 146.571 kb on + strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.692 kb on + strand, within HGI48_RS00615 at 146.693 kb on - strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.822 kb on - strand, within HGI48_RS00615 at 146.893 kb on + strand, within HGI48_RS00615 at 146.893 kb on + strand, within HGI48_RS00615 at 146.894 kb on - strand, within HGI48_RS00615 at 146.980 kb on + strand, within HGI48_RS00615 at 146.980 kb on + strand, within HGI48_RS00615 at 146.981 kb on - strand at 146.981 kb on - strand, within HGI48_RS00615 at 147.043 kb on + strand, within HGI48_RS00615 at 147.043 kb on + strand, within HGI48_RS00615 at 147.044 kb on - strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.249 kb on - strand at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.353 kb on + strand at 147.354 kb on - strand at 147.354 kb on - strand at 147.363 kb on + strand at 147.364 kb on - strand at 147.404 kb on + strand at 147.405 kb on - strand at 147.405 kb on - strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.420 kb on - strand at 147.420 kb on - strand at 147.451 kb on - strand at 147.579 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.651 kb on - strand, within HGI48_RS00620 at 148.074 kb on + strand at 148.122 kb on + strand, within HGI48_RS00620 at 148.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 145,182 + HGI48_RS00610 0.37 +0.9 145,183 - HGI48_RS00610 0.37 +1.2 145,183 - HGI48_RS00610 0.37 -0.8 145,200 + HGI48_RS00610 0.38 +0.2 145,216 - HGI48_RS00610 0.39 -1.8 145,216 - HGI48_RS00610 0.39 -0.6 145,216 - HGI48_RS00610 0.39 +1.8 145,216 - HGI48_RS00610 0.39 -0.1 145,227 - HGI48_RS00610 0.40 -2.5 145,227 - HGI48_RS00610 0.40 +0.1 145,402 + HGI48_RS00610 0.51 +1.4 145,402 + HGI48_RS00610 0.51 -0.8 145,445 + HGI48_RS00610 0.54 -2.0 145,448 + HGI48_RS00610 0.55 +0.7 145,448 + HGI48_RS00610 0.55 -0.8 145,448 + HGI48_RS00610 0.55 +0.4 145,448 + HGI48_RS00610 0.55 -0.0 145,448 + HGI48_RS00610 0.55 -1.3 145,448 + HGI48_RS00610 0.55 +0.6 145,448 + HGI48_RS00610 0.55 -0.1 145,448 + HGI48_RS00610 0.55 +0.4 145,449 - HGI48_RS00610 0.55 -0.4 145,449 - HGI48_RS00610 0.55 +0.4 145,449 - HGI48_RS00610 0.55 -0.0 145,449 - HGI48_RS00610 0.55 -2.6 145,567 + HGI48_RS00610 0.63 +0.3 145,567 + HGI48_RS00610 0.63 +0.2 145,567 + +1.9 145,568 - -0.4 145,568 - +0.6 145,605 - HGI48_RS00610 0.65 -1.4 145,605 - HGI48_RS00610 0.65 +1.9 145,623 + HGI48_RS00610 0.66 -0.2 145,624 - HGI48_RS00610 0.66 -1.0 145,624 - HGI48_RS00610 0.66 +0.0 145,683 + HGI48_RS00610 0.70 -0.1 145,683 + HGI48_RS00610 0.70 +0.8 145,684 - HGI48_RS00610 0.70 -0.7 145,684 - HGI48_RS00610 0.70 -0.4 145,717 + HGI48_RS00610 0.73 +0.2 145,717 + HGI48_RS00610 0.73 +1.2 145,717 + HGI48_RS00610 0.73 -0.6 145,717 + HGI48_RS00610 0.73 -1.4 145,717 + HGI48_RS00610 0.73 -1.3 145,717 + HGI48_RS00610 0.73 -1.6 145,717 + HGI48_RS00610 0.73 -1.3 145,717 + HGI48_RS00610 0.73 -0.8 145,717 + HGI48_RS00610 0.73 +0.3 145,717 + HGI48_RS00610 0.73 -0.2 145,717 + HGI48_RS00610 0.73 -0.1 145,717 + HGI48_RS00610 0.73 -1.2 145,717 + HGI48_RS00610 0.73 +0.6 145,717 + HGI48_RS00610 0.73 -0.5 145,717 + HGI48_RS00610 0.73 +1.5 145,718 - HGI48_RS00610 0.73 +1.2 145,718 - HGI48_RS00610 0.73 +0.4 145,718 - HGI48_RS00610 0.73 +0.6 145,718 - HGI48_RS00610 0.73 +0.8 145,718 - HGI48_RS00610 0.73 +0.2 145,718 - HGI48_RS00610 0.73 -1.4 145,718 - HGI48_RS00610 0.73 +0.2 145,718 - HGI48_RS00610 0.73 -1.5 145,718 - HGI48_RS00610 0.73 -1.2 145,718 - HGI48_RS00610 0.73 -0.4 145,718 - HGI48_RS00610 0.73 -0.2 145,718 - HGI48_RS00610 0.73 -0.2 145,718 - -0.4 145,859 + HGI48_RS00610 0.82 +2.2 146,044 + -1.7 146,044 + -0.5 146,046 + +1.2 146,046 + +0.0 146,046 + -1.4 146,046 + -0.6 146,046 + -0.8 146,046 + +0.2 146,046 + -0.2 146,046 + -2.0 146,046 + +0.2 146,046 + +0.4 146,046 + -0.4 146,046 + +0.3 146,046 + -0.4 146,047 - +1.3 146,047 - -1.4 146,047 - -1.4 146,047 - +1.2 146,047 - -0.2 146,047 - +0.8 146,047 - -0.2 146,119 + -0.4 146,120 - -1.2 146,311 + HGI48_RS00615 0.16 -2.0 146,311 + HGI48_RS00615 0.16 -1.2 146,311 + HGI48_RS00615 0.16 +0.6 146,312 - HGI48_RS00615 0.16 +0.4 146,312 - HGI48_RS00615 0.16 +0.2 146,312 - +4.2 146,312 - HGI48_RS00615 0.16 +1.4 146,312 - HGI48_RS00615 0.16 +1.5 146,312 - HGI48_RS00615 0.16 -0.2 146,312 - HGI48_RS00615 0.16 +0.4 146,312 - HGI48_RS00615 0.16 -1.5 146,358 + HGI48_RS00615 0.19 -1.4 146,358 + +0.6 146,359 - +0.6 146,359 - HGI48_RS00615 0.19 -0.3 146,359 - HGI48_RS00615 0.19 -0.1 146,398 + HGI48_RS00615 0.22 -0.9 146,398 + HGI48_RS00615 0.22 +0.9 146,399 - HGI48_RS00615 0.23 +1.4 146,455 + HGI48_RS00615 0.27 +0.5 146,455 + HGI48_RS00615 0.27 -0.7 146,455 + HGI48_RS00615 0.27 -2.2 146,456 - -0.4 146,456 - HGI48_RS00615 0.27 -1.2 146,456 - HGI48_RS00615 0.27 +2.0 146,456 - HGI48_RS00615 0.27 -2.1 146,460 + HGI48_RS00615 0.27 -0.2 146,498 - -0.4 146,498 - HGI48_RS00615 0.30 -0.8 146,508 + HGI48_RS00615 0.31 -1.7 146,509 - HGI48_RS00615 0.31 +0.8 146,571 + HGI48_RS00615 0.36 -0.1 146,571 + HGI48_RS00615 0.36 -0.2 146,572 - HGI48_RS00615 0.36 -2.2 146,572 - HGI48_RS00615 0.36 -0.2 146,572 - HGI48_RS00615 0.36 +0.5 146,628 + HGI48_RS00615 0.41 -0.4 146,628 + HGI48_RS00615 0.41 -1.6 146,628 + HGI48_RS00615 0.41 +0.0 146,628 + HGI48_RS00615 0.41 -0.2 146,692 + HGI48_RS00615 0.46 +2.0 146,693 - HGI48_RS00615 0.46 -2.5 146,783 + HGI48_RS00615 0.53 -0.3 146,783 + HGI48_RS00615 0.53 -0.2 146,783 + +2.4 146,783 + HGI48_RS00615 0.53 +0.5 146,783 + HGI48_RS00615 0.53 +0.4 146,783 + HGI48_RS00615 0.53 +0.8 146,783 + HGI48_RS00615 0.53 -2.3 146,783 + -0.4 146,783 + HGI48_RS00615 0.53 -1.4 146,783 + HGI48_RS00615 0.53 -0.6 146,783 + HGI48_RS00615 0.53 +0.8 146,783 + HGI48_RS00615 0.53 +0.4 146,784 - HGI48_RS00615 0.53 -0.2 146,784 - HGI48_RS00615 0.53 -1.4 146,784 - HGI48_RS00615 0.53 +0.7 146,784 - HGI48_RS00615 0.53 +0.2 146,784 - HGI48_RS00615 0.53 +0.3 146,784 - HGI48_RS00615 0.53 -1.2 146,784 - HGI48_RS00615 0.53 +2.0 146,784 - HGI48_RS00615 0.53 -0.5 146,784 - HGI48_RS00615 0.53 -0.4 146,784 - HGI48_RS00615 0.53 -0.4 146,822 - HGI48_RS00615 0.56 -0.2 146,893 + HGI48_RS00615 0.62 -0.4 146,893 + HGI48_RS00615 0.62 -1.0 146,894 - HGI48_RS00615 0.62 -1.1 146,980 + HGI48_RS00615 0.69 -0.4 146,980 + HGI48_RS00615 0.69 +0.5 146,981 - +0.2 146,981 - HGI48_RS00615 0.69 -0.1 147,043 + HGI48_RS00615 0.74 -1.6 147,043 + HGI48_RS00615 0.74 +1.2 147,044 - HGI48_RS00615 0.74 +0.2 147,092 + HGI48_RS00615 0.77 -0.6 147,092 + +1.2 147,092 + HGI48_RS00615 0.77 -0.4 147,092 + HGI48_RS00615 0.77 -0.8 147,092 + HGI48_RS00615 0.77 +0.0 147,092 + HGI48_RS00615 0.77 -0.0 147,092 + HGI48_RS00615 0.77 -0.8 147,092 + HGI48_RS00615 0.77 -1.2 147,092 + HGI48_RS00615 0.77 +1.2 147,092 + HGI48_RS00615 0.77 -1.2 147,092 + HGI48_RS00615 0.77 -1.5 147,093 - HGI48_RS00615 0.78 -0.6 147,093 - HGI48_RS00615 0.78 -0.6 147,093 - HGI48_RS00615 0.78 -0.4 147,093 - HGI48_RS00615 0.78 -0.3 147,093 - HGI48_RS00615 0.78 -2.3 147,093 - HGI48_RS00615 0.78 -2.0 147,093 - HGI48_RS00615 0.78 +0.2 147,248 + HGI48_RS00615 0.90 -0.8 147,248 + HGI48_RS00615 0.90 +1.8 147,248 + HGI48_RS00615 0.90 +1.4 147,248 + HGI48_RS00615 0.90 -1.1 147,249 - +1.6 147,249 - HGI48_RS00615 0.90 +0.5 147,249 - HGI48_RS00615 0.90 -0.2 147,249 - HGI48_RS00615 0.90 +0.2 147,249 - HGI48_RS00615 0.90 -0.6 147,353 + +0.2 147,354 - +0.2 147,354 - +0.8 147,363 + -1.2 147,364 - -0.4 147,404 + +0.7 147,405 - +1.7 147,405 - +1.2 147,419 + -0.8 147,419 + +1.7 147,419 + +0.6 147,419 + +0.1 147,420 - +0.8 147,420 - -0.4 147,451 - +0.8 147,579 - HGI48_RS00620 0.23 -0.2 147,592 - HGI48_RS00620 0.24 -0.6 147,592 - HGI48_RS00620 0.24 +1.3 147,651 - HGI48_RS00620 0.30 -1.2 148,074 + +2.2 148,122 + HGI48_RS00620 0.79 -0.4 148,360 + +1.2
Or see this region's nucleotide sequence