Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00345

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
87,265	+		HGI48_RS00335	0.29	-1.5
87,265	+		HGI48_RS00335	0.29	-2.2
87,265	+		HGI48_RS00335	0.29	-1.0
87,266	-		HGI48_RS00335	0.29	-0.2
87,266	-		HGI48_RS00335	0.29	-0.7
87,266	-		HGI48_RS00335	0.29	-1.6
87,266	-		HGI48_RS00335	0.29	+0.0
87,310	+		HGI48_RS00335	0.37	+0.8
87,311	-		HGI48_RS00335	0.37	+0.2
87,311	-		HGI48_RS00335	0.37	-0.2
87,494	+		HGI48_RS00335	0.69	-0.4
87,494	+		HGI48_RS00335	0.69	-1.2
87,494	+		HGI48_RS00335	0.69	-1.2
87,494	+		HGI48_RS00335	0.69	-0.2
87,494	+		HGI48_RS00335	0.69	-1.4
87,494	+		HGI48_RS00335	0.69	-0.4
87,494	+		HGI48_RS00335	0.69	+1.2
87,494	+		HGI48_RS00335	0.69	+1.8
87,494	+		HGI48_RS00335	0.69	-0.7
87,495	-		HGI48_RS00335	0.69	+1.0
87,495	-		HGI48_RS00335	0.69	-1.6
87,495	-		HGI48_RS00335	0.69	-2.0
87,495	-		HGI48_RS00335	0.69	+1.3
87,495	-		HGI48_RS00335	0.69	-1.2
87,531	-		HGI48_RS00335	0.75	-1.3
87,531	-		HGI48_RS00335	0.75	-0.3
87,533	+		HGI48_RS00335	0.75	+1.2
87,533	+		HGI48_RS00335	0.75	-1.2
87,533	+		HGI48_RS00335	0.75	+1.4
87,533	+		HGI48_RS00335	0.75	-1.2
87,533	+		HGI48_RS00335	0.75	-0.6
87,534	-		HGI48_RS00335	0.76	-0.9
87,534	-		HGI48_RS00335	0.76	+0.5
87,538	+		HGI48_RS00335	0.76	+0.3
87,538	+		HGI48_RS00335	0.76	-1.8
87,538	+		HGI48_RS00335	0.76	+0.5
87,538	+		HGI48_RS00335	0.76	-0.8
87,539	-		HGI48_RS00335	0.76	+1.4
87,544	+		HGI48_RS00335	0.77	-0.2
87,544	+		HGI48_RS00335	0.77	-0.5
87,545	-		HGI48_RS00335	0.77	+0.4
87,545	-		HGI48_RS00335	0.77	-1.6
87,618	-				+1.2
87,618	-				-0.3
87,618	-				-2.8
87,618	-				-0.8
87,677	+				-0.8
87,677	+				-1.0
87,677	+				-1.3
87,677	+				+0.8
87,678	-				+0.2
87,678	-				+0.3
87,678	-				+0.3
87,820	+				+0.6
87,820	+				-2.5
87,820	+				-0.8
87,820	+				-1.4
87,820	+				-1.8
87,821	-				+0.3
87,821	-				-1.4
87,821	-				-0.4
87,821	-				-0.6
87,822	+				-1.9
87,822	+				+0.6
87,822	+				-0.6
87,822	+				-0.2
87,822	+				-1.9
87,822	+				-2.3
87,822	+				+0.5
87,822	+				+0.6
87,822	+				-0.6
87,822	+				+0.7
87,822	+				+0.8
87,822	+				-1.4
87,822	+				+0.1
87,822	+				-1.0
87,822	+				+0.9
87,822	+				-0.7
87,822	+				+0.4
87,822	+				+0.9
87,822	+				+0.2
87,823	-				-0.8
87,823	-				+0.2
87,823	-				+0.5
87,823	-				-1.0
87,842	+				+0.3
87,843	-				+0.3
87,843	-				-0.6
87,849	+				+0.2
87,849	+				-0.3
87,849	+				-0.4
87,849	+				+0.8
87,850	-				-1.4
87,850	-				+0.2
87,850	-				-0.4
87,850	-				-2.1
87,850	-				+0.2
87,851	+				+1.6
87,851	+				+0.7
87,851	+				+0.1
87,851	+				+0.8
87,851	+				+1.3
87,851	+				+0.1
87,851	+				-1.3
87,852	-				-1.4
87,852	-				-2.4
87,852	-				+0.1
88,110	+				-0.8
88,111	-				-0.4
88,175	+				+2.2
88,175	+				-0.2
88,176	-				+0.2
88,214	+				-1.4
88,214	+				+0.6
88,215	-				+0.2
88,215	-				+0.1
88,218	+				+0.0
88,218	+				+1.8
88,218	+				+0.9
88,218	+				-0.4
88,218	+				+0.4
88,218	+				+0.7
88,218	+				+0.2
88,219	-				+0.3
88,219	-				+1.7
88,219	-				-0.4
88,219	-				+0.7
88,219	-				-0.6
88,219	-				+0.6
88,272	+				+0.6
88,347	+		HGI48_RS00345	0.14	-1.8
88,450	+		HGI48_RS00345	0.25	+0.2
88,450	+		HGI48_RS00345	0.25	+0.9
88,450	+		HGI48_RS00345	0.25	+0.8
88,450	+		HGI48_RS00345	0.25	-0.1
88,450	+		HGI48_RS00345	0.25	-0.1
88,450	+		HGI48_RS00345	0.25	-1.2
88,451	-		HGI48_RS00345	0.25	-0.8
88,451	-		HGI48_RS00345	0.25	+0.0
88,467	+		HGI48_RS00345	0.26	+0.8
88,587	+		HGI48_RS00345	0.39	-1.0
88,587	+		HGI48_RS00345	0.39	+0.3
88,587	+		HGI48_RS00345	0.39	-0.9
88,588	-		HGI48_RS00345	0.39	+0.6
88,723	-		HGI48_RS00345	0.54	+0.4
88,781	-		HGI48_RS00345	0.60	-0.8
88,944	+		HGI48_RS00345	0.77	+0.2
88,945	-				+2.8
88,945	-		HGI48_RS00345	0.77	-1.2
89,086	+				-0.2
89,086	+				+0.6
89,122	+				+2.3
89,122	+				+0.2
89,122	+				+1.4
89,122	+				-0.2
89,122	+				+0.3
89,122	+				+0.5
89,122	+				-0.3
89,122	+				-0.9
89,122	+				+1.2
89,122	+				+2.4
89,122	+				-1.4
89,122	+				+0.4
89,122	+				-0.6
89,122	+				+1.7
89,122	+				+0.1
89,122	+				+1.5
89,123	-				+0.2
89,123	-				+2.2
89,123	-				+1.4
89,123	-				-1.4
89,123	-				+0.2
89,123	-				-0.8
89,123	-				-1.2
89,124	+				-0.1
89,124	+				-2.8
89,125	-				-1.9
89,125	-				+0.0
89,159	-				-0.2
89,435	+				-0.4
89,435	+				-1.4
89,436	-				+0.9
89,442	-				-0.4
89,467	+				-0.6
89,468	-				+1.8
89,468	-				+0.5
89,470	+				-0.8
89,470	+				-1.1
89,470	+				+0.4
89,470	+				+1.7
89,470	+				+0.4
89,470	+				-1.2
89,470	+				-0.1
89,471	-				+2.0
89,471	-				-0.4
89,471	-				-0.8
89,471	-				+0.7
89,471	-				+0.6
89,471	-				+0.4
89,471	-				-0.8
89,474	+				+1.9
89,474	+				-1.4
89,475	-				-2.3
89,475	-				-0.2
89,475	-				+0.2
89,475	-				+0.2
89,475	-				+0.9
89,475	-				+0.8
89,475	-				-0.4
89,475	-				+0.2
89,475	-				+0.5
89,543	+				-1.2
89,589	+				-1.2
89,590	-				+0.1
89,590	-				-0.2
89,595	+				+0.9
89,595	+				-0.1
89,595	+				+0.2
89,595	+				+1.0
89,595	+				-0.3
89,596	-				+1.2
89,596	-				+1.7
89,596	-				-2.0
89,596	-				-0.7
89,596	-				-1.8
89,596	-				+0.6
89,631	+		HGI48_RS00355	0.12	+0.8
89,631	+		HGI48_RS00355	0.12	-0.3
89,632	-		HGI48_RS00355	0.12	+1.8
89,632	-		HGI48_RS00355	0.12	+0.1
89,632	-		HGI48_RS00355	0.12	-1.4
89,632	-				-0.4
89,632	-		HGI48_RS00355	0.12	+0.8
89,696	+		HGI48_RS00355	0.16	-0.1
89,748	-		HGI48_RS00355	0.20	+0.6
89,769	+		HGI48_RS00355	0.22	-3.2
89,769	+		HGI48_RS00355	0.22	-0.3
89,769	+		HGI48_RS00355	0.22	-2.4
89,769	+		HGI48_RS00355	0.22	+2.0
89,769	+		HGI48_RS00355	0.22	+0.6
89,769	+		HGI48_RS00355	0.22	-0.5
89,770	-		HGI48_RS00355	0.22	+0.5
89,770	-		HGI48_RS00355	0.22	+0.8
89,846	+		HGI48_RS00355	0.27	+1.8
89,847	-		HGI48_RS00355	0.28	-0.8
89,847	-		HGI48_RS00355	0.28	-0.3
89,847	-		HGI48_RS00355	0.28	+1.7
89,847	-		HGI48_RS00355	0.28	+0.6
89,868	+		HGI48_RS00355	0.29	-0.2
89,869	-		HGI48_RS00355	0.29	+0.5
89,935	-		HGI48_RS00355	0.34	+0.2
89,935	-		HGI48_RS00355	0.34	+0.2
89,999	+		HGI48_RS00355	0.39	-0.2
90,000	-		HGI48_RS00355	0.39	+0.7
90,000	-		HGI48_RS00355	0.39	+1.8
90,021	+		HGI48_RS00355	0.40	+0.2
90,045	+		HGI48_RS00355	0.42	+0.2
90,045	+				+0.2
90,045	+		HGI48_RS00355	0.42	+1.1
90,046	-				+2.2
90,046	-		HGI48_RS00355	0.42	+0.3
90,046	-		HGI48_RS00355	0.42	-0.8
90,051	-		HGI48_RS00355	0.43	+0.7
90,125	+		HGI48_RS00355	0.48	+1.3
90,144	-		HGI48_RS00355	0.50	+0.4