Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21575

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,813,605	+		HGI48_RS21570	0.16	-0.4
4,813,605	+		HGI48_RS21570	0.16	+0.9
4,813,606	-		HGI48_RS21570	0.16	+0.2
4,813,636	+		HGI48_RS21570	0.20	-0.0
4,813,636	+		HGI48_RS21570	0.20	-0.6
4,813,636	+		HGI48_RS21570	0.20	+0.7
4,813,636	+		HGI48_RS21570	0.20	+1.5
4,813,637	-		HGI48_RS21570	0.20	-3.3
4,813,637	-		HGI48_RS21570	0.20	+1.5
4,813,637	-		HGI48_RS21570	0.20	-0.9
4,813,779	-		HGI48_RS21570	0.36	-0.3
4,813,829	-		HGI48_RS21570	0.42	+0.6
4,813,881	-		HGI48_RS21570	0.47	-1.0
4,813,881	-		HGI48_RS21570	0.47	+0.9
4,813,882	+		HGI48_RS21570	0.48	+1.0
4,813,882	+		HGI48_RS21570	0.48	-0.3
4,813,882	+		HGI48_RS21570	0.48	-0.9
4,813,883	-		HGI48_RS21570	0.48	+0.0
4,813,883	-		HGI48_RS21570	0.48	-0.3
4,813,883	-		HGI48_RS21570	0.48	-1.7
4,814,021	+		HGI48_RS21570	0.63	+0.7
4,814,032	+		HGI48_RS21570	0.64	-0.2
4,814,149	+		HGI48_RS21570	0.78	-2.0
4,814,149	+		HGI48_RS21570	0.78	-2.1
4,814,149	+		HGI48_RS21570	0.78	-0.6
4,814,150	-		HGI48_RS21570	0.78	+0.6
4,814,150	-		HGI48_RS21570	0.78	-1.1
4,814,150	-		HGI48_RS21570	0.78	+1.1
4,814,345	+				+0.2
4,814,370	-				-0.8
4,814,370	-				-0.3
4,814,382	+				+0.6
4,814,382	+				-2.1
4,814,382	+				+0.1
4,814,382	+				+1.3
4,814,382	+				-1.1
4,814,382	+				+0.0
4,814,382	+				-0.4
4,814,382	+				-1.2
4,814,382	+				-0.4
4,814,382	+				-0.6
4,814,382	+				+0.0
4,814,383	-				+1.3
4,814,383	-				-0.3
4,814,383	-				-0.8
4,814,383	-				-2.1
4,814,383	-				+0.0
4,814,383	-				-0.8
4,814,383	-				-0.3
4,814,383	-				-1.6
4,814,383	-				+1.5
4,814,383	-				+0.3
4,814,383	-				+0.5
4,814,383	-				-2.1
4,814,383	-				+0.4
4,814,384	+				+0.7
4,814,384	+				+0.9
4,814,384	+				+0.5
4,814,385	-				+0.2
4,814,385	-				+0.4
4,814,385	-				+2.3
4,814,385	-				-1.3
4,814,385	-				-1.8
4,814,385	-				+1.3
4,814,385	-				+2.3
4,814,385	-				-1.1
4,814,385	-				-2.7
4,814,385	-				+2.3
4,814,443	+				-0.3
4,814,443	+				+1.7
4,814,444	-				-0.3
4,814,444	-				-1.3
4,814,495	+				-2.1
4,814,495	+				+1.3
4,814,496	-				-0.3
4,814,496	-				+0.7
4,814,496	-				-0.3
4,814,542	+		HGI48_RS21575	0.13	-1.1
4,814,542	+		HGI48_RS21575	0.13	-1.2
4,814,543	-		HGI48_RS21575	0.14	+0.2
4,814,611	+		HGI48_RS21575	0.22	-0.3
4,814,612	-				+1.3
4,814,619	-		HGI48_RS21575	0.23	-0.6
4,814,619	-		HGI48_RS21575	0.23	-0.1
4,814,619	-				+1.3
4,814,619	-		HGI48_RS21575	0.23	-0.1
4,814,619	-		HGI48_RS21575	0.23	-0.3
4,814,628	-		HGI48_RS21575	0.24	+0.9
4,814,718	+		HGI48_RS21575	0.36	+0.2
4,814,718	+		HGI48_RS21575	0.36	-0.6
4,814,719	-		HGI48_RS21575	0.36	+0.0
4,814,762	+		HGI48_RS21575	0.42	+2.3
4,814,763	-		HGI48_RS21575	0.42	+0.3
4,814,763	-		HGI48_RS21575	0.42	-0.7
4,814,770	+		HGI48_RS21575	0.43	-0.4
4,814,771	-		HGI48_RS21575	0.43	-1.3
4,814,771	-		HGI48_RS21575	0.43	-1.8
4,815,047	+				+3.4
4,815,047	+		HGI48_RS21575	0.78	+0.9
4,815,047	+		HGI48_RS21575	0.78	-0.1
4,815,047	+		HGI48_RS21575	0.78	+0.7
4,815,047	+		HGI48_RS21575	0.78	-0.7
4,815,048	-				+0.2
4,815,048	-		HGI48_RS21575	0.79	-2.1
4,815,048	-		HGI48_RS21575	0.79	+1.3
4,815,048	-		HGI48_RS21575	0.79	+0.0
4,815,048	-		HGI48_RS21575	0.79	+0.3
4,815,048	-				+0.7
4,815,049	+		HGI48_RS21575	0.79	+0.7
4,815,050	-		HGI48_RS21575	0.79	-0.6
4,815,050	-		HGI48_RS21575	0.79	-0.0
4,815,050	-		HGI48_RS21575	0.79	+0.1
4,815,070	+		HGI48_RS21575	0.81	+0.0
4,815,070	+		HGI48_RS21575	0.81	-0.3
4,815,070	+		HGI48_RS21575	0.81	+0.0
4,815,071	-		HGI48_RS21575	0.81	-0.8
4,815,112	+		HGI48_RS21575	0.87	-1.3
4,815,112	+				+2.1
4,815,112	+		HGI48_RS21575	0.87	+0.3
4,815,112	+		HGI48_RS21575	0.87	-1.6
4,815,113	-		HGI48_RS21575	0.87	+1.3
4,815,116	+		HGI48_RS21575	0.87	-1.6
4,815,116	+		HGI48_RS21575	0.87	-2.1
4,815,191	+				+1.2
4,815,191	+				-0.5
4,815,191	+				+0.4
4,815,191	+				+0.7
4,815,191	+				-0.5
4,815,191	+				-0.3
4,815,191	+				-2.6
4,815,191	+				-0.3
4,815,191	+				-2.3
4,815,191	+				-1.1
4,815,191	+				+0.0
4,815,191	+				-0.2
4,815,191	+				-1.3
4,815,192	-				+1.1
4,815,217	-				+1.6
4,815,224	+				+1.3
4,815,224	+				-1.3
4,815,224	+				-1.3
4,815,224	+				-1.7
4,815,224	+				-0.0
4,815,224	+				+1.4
4,815,957	+				+0.7
4,815,957	+				-0.8
4,815,958	-				-2.1
4,815,968	+				-0.8
4,815,968	+				-1.6
4,815,968	+				+0.1
4,815,969	-				-0.2
4,815,969	-				+0.4
4,815,969	-				-1.3
4,815,969	-				+0.3
4,815,973	-				+0.2
4,815,973	-				+0.2
4,816,029	+				+0.0
4,816,044	-				-1.2
4,816,044	-				+1.3
4,816,044	-				+0.2
4,816,044	-				-0.7
4,816,044	-				+0.1
4,816,090	-				-2.1
4,816,091	+				-0.1
4,816,091	+				-0.4
4,816,091	+				-1.3
4,816,091	+				-1.3
4,816,092	-				+0.1
4,816,092	-				+0.4
4,816,092	-				-1.3
4,816,092	-				+0.3
4,816,096	+				-0.7
4,816,096	+				-0.3
4,816,096	+				-0.8
4,816,096	+				+0.2
4,816,096	+				+0.4
4,816,096	+				-1.2
4,816,096	+				+0.7
4,816,096	+				-0.3
4,816,096	+				-1.6
4,816,096	+				-1.0
4,816,096	+				-1.6
4,816,096	+				-0.3
4,816,096	+				+0.6
4,816,096	+				+0.0
4,816,096	+				-2.4
4,816,096	+				-0.8
4,816,097	-				-0.1
4,816,097	-				-0.9
4,816,097	-				+0.7
4,816,097	-				-0.7
4,816,097	-				-1.1
4,816,097	-				+0.2
4,816,097	-				+1.0
4,816,097	-				+2.5
4,816,097	-				-0.8
4,816,097	-				-1.8
4,816,097	-				+1.3
4,816,097	-				+0.2
4,816,097	-				-0.3
4,816,097	-				-2.6
4,816,097	-				-0.5
4,816,097	-				-0.8
4,816,104	+				-0.8
4,816,104	+				-0.7
4,816,105	-				+0.7
4,816,105	-				+0.3
4,816,105	-				-1.3
4,816,105	-				+1.9
4,816,105	-				+0.3
4,816,108	-				+0.9
4,816,117	+				+0.5
4,816,117	+				-0.0
4,816,118	-				+0.2
4,816,118	-				-1.1
4,816,118	-				+1.5
4,816,123	-				-0.7
4,816,123	-				-3.0
4,816,167	+				-1.6