Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19145

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,300,000	+		HGI48_RS19140	0.48	-0.4
4,300,000	+		HGI48_RS19140	0.48	-0.4
4,300,000	+		HGI48_RS19140	0.48	-0.4
4,300,000	+		HGI48_RS19140	0.48	-0.2
4,300,000	+		HGI48_RS19140	0.48	+0.8
4,300,001	-		HGI48_RS19140	0.48	+0.5
4,300,009	+		HGI48_RS19140	0.49	-0.2
4,300,012	+		HGI48_RS19140	0.49	-0.2
4,300,051	+		HGI48_RS19140	0.51	-2.2
4,300,052	-		HGI48_RS19140	0.51	-0.5
4,300,052	-		HGI48_RS19140	0.51	-1.4
4,300,052	-		HGI48_RS19140	0.51	+1.3
4,300,123	+		HGI48_RS19140	0.55	+0.8
4,300,124	-		HGI48_RS19140	0.55	+0.1
4,300,135	+		HGI48_RS19140	0.56	+0.5
4,300,135	+		HGI48_RS19140	0.56	+0.2
4,300,136	-		HGI48_RS19140	0.56	+0.3
4,300,191	-		HGI48_RS19140	0.59	-1.7
4,300,290	-		HGI48_RS19140	0.65	+1.1
4,300,290	-		HGI48_RS19140	0.65	-0.3
4,300,298	-		HGI48_RS19140	0.65	+1.0
4,300,379	-		HGI48_RS19140	0.70	+0.4
4,300,379	-		HGI48_RS19140	0.70	-1.2
4,300,489	+		HGI48_RS19140	0.76	-1.6
4,300,489	+		HGI48_RS19140	0.76	-0.8
4,300,489	+		HGI48_RS19140	0.76	-0.8
4,300,489	+		HGI48_RS19140	0.76	+0.1
4,300,489	+		HGI48_RS19140	0.76	-0.6
4,300,489	+		HGI48_RS19140	0.76	-0.8
4,300,489	+		HGI48_RS19140	0.76	-0.8
4,300,489	+		HGI48_RS19140	0.76	-0.5
4,300,490	-		HGI48_RS19140	0.76	+1.2
4,300,490	-		HGI48_RS19140	0.76	+1.4
4,300,490	-		HGI48_RS19140	0.76	-1.8
4,300,493	+		HGI48_RS19140	0.76	-0.1
4,300,493	+		HGI48_RS19140	0.76	+1.0
4,300,493	+				-0.8
4,300,493	+		HGI48_RS19140	0.76	+0.9
4,300,598	-		HGI48_RS19140	0.82	-2.5
4,300,598	-		HGI48_RS19140	0.82	-0.4
4,300,598	-		HGI48_RS19140	0.82	+0.2
4,300,659	-		HGI48_RS19140	0.85	+0.3
4,300,660	+				-0.8
4,300,660	+		HGI48_RS19140	0.86	+0.3
4,300,660	+		HGI48_RS19140	0.86	+0.5
4,300,660	+		HGI48_RS19140	0.86	-0.6
4,300,661	-		HGI48_RS19140	0.86	+1.0
4,300,661	-		HGI48_RS19140	0.86	+0.5
4,300,661	-		HGI48_RS19140	0.86	+0.8
4,300,661	-		HGI48_RS19140	0.86	-0.5
4,300,697	-		HGI48_RS19140	0.88	-1.4
4,300,756	+				+1.2
4,300,756	+				+0.4
4,300,756	+				-2.2
4,300,756	+				-0.5
4,300,757	-				+1.0
4,300,757	-				+0.6
4,300,757	-				+0.6
4,300,757	-				-1.0
4,300,757	-				+0.8
4,300,766	+				+0.2
4,300,856	-				-1.8
4,300,856	-				+1.2
4,300,856	-				-0.2
4,301,078	-				+0.5
4,301,078	-				-0.9
4,301,117	-				+0.0
4,301,126	+		HGI48_RS19145	0.10	+0.0
4,301,127	-		HGI48_RS19145	0.10	-1.0
4,301,165	-		HGI48_RS19145	0.13	+0.2
4,301,165	-		HGI48_RS19145	0.13	-1.8
4,301,165	-		HGI48_RS19145	0.13	-0.2
4,301,165	-		HGI48_RS19145	0.13	+0.2
4,301,165	-		HGI48_RS19145	0.13	-0.4
4,301,191	+		HGI48_RS19145	0.15	+0.3
4,301,191	+		HGI48_RS19145	0.15	-0.1
4,301,192	-		HGI48_RS19145	0.15	-0.0
4,301,257	+		HGI48_RS19145	0.20	+0.5
4,301,257	+		HGI48_RS19145	0.20	-0.1
4,301,258	-		HGI48_RS19145	0.20	+0.8
4,301,258	-		HGI48_RS19145	0.20	-1.3
4,301,258	-		HGI48_RS19145	0.20	-1.8
4,301,264	-				+0.8
4,301,264	-		HGI48_RS19145	0.21	+1.0
4,301,264	-		HGI48_RS19145	0.21	-1.6
4,301,350	+		HGI48_RS19145	0.27	-2.8
4,301,350	+		HGI48_RS19145	0.27	+0.3
4,301,350	+		HGI48_RS19145	0.27	-0.6
4,301,351	-		HGI48_RS19145	0.27	-1.4
4,301,504	+		HGI48_RS19145	0.39	-1.2
4,301,509	+		HGI48_RS19145	0.40	-0.2
4,301,510	-		HGI48_RS19145	0.40	+1.6
4,301,510	-		HGI48_RS19145	0.40	-0.8
4,301,510	-		HGI48_RS19145	0.40	+0.2
4,301,554	+		HGI48_RS19145	0.43	-1.0
4,301,554	+		HGI48_RS19145	0.43	+1.2
4,301,631	+		HGI48_RS19145	0.49	-0.6
4,301,632	-		HGI48_RS19145	0.49	-0.8
4,301,918	+		HGI48_RS19145	0.71	-1.7
4,301,918	+		HGI48_RS19145	0.71	-0.2
4,301,918	+		HGI48_RS19145	0.71	+1.1
4,301,918	+				-0.8
4,301,919	-		HGI48_RS19145	0.71	-1.7
4,301,919	-		HGI48_RS19145	0.71	-1.4
4,301,919	-		HGI48_RS19145	0.71	-2.2
4,301,919	-		HGI48_RS19145	0.71	+0.7
4,301,919	-		HGI48_RS19145	0.71	+0.3
4,301,919	-		HGI48_RS19145	0.71	+1.8
4,301,919	-		HGI48_RS19145	0.71	+2.3
4,301,919	-		HGI48_RS19145	0.71	+0.1
4,301,928	-		HGI48_RS19145	0.72	-0.2
4,301,928	-		HGI48_RS19145	0.72	-0.8
4,301,928	-		HGI48_RS19145	0.72	-0.8
4,301,928	-		HGI48_RS19145	0.72	-0.3
4,301,954	+		HGI48_RS19145	0.74	-1.0
4,301,980	+		HGI48_RS19145	0.76	+0.5
4,301,980	+		HGI48_RS19145	0.76	-0.1
4,301,981	-		HGI48_RS19145	0.76	-0.0
4,302,031	+		HGI48_RS19145	0.79	+1.2
4,302,031	+		HGI48_RS19145	0.79	-2.0
4,302,031	+		HGI48_RS19145	0.79	-0.6
4,302,031	+				+0.8
4,302,031	+		HGI48_RS19145	0.79	-0.0
4,302,031	+		HGI48_RS19145	0.79	+0.3
4,302,031	+		HGI48_RS19145	0.79	+0.4
4,302,032	-		HGI48_RS19145	0.80	+0.4
4,302,032	-		HGI48_RS19145	0.80	-1.6
4,302,032	-		HGI48_RS19145	0.80	+0.9
4,302,098	+		HGI48_RS19145	0.85	-0.4
4,302,098	+		HGI48_RS19145	0.85	-0.4
4,302,098	+		HGI48_RS19145	0.85	+0.3
4,302,168	-		HGI48_RS19145	0.90	-3.0
4,302,324	+				+0.8
4,302,332	+				-0.6
4,302,332	+				+1.5
4,302,332	+				-1.5
4,302,332	+				+0.2
4,302,333	-				-0.1
4,302,333	-				+0.5
4,302,553	+		HGI48_RS19150	0.14	+0.3
4,302,559	+		HGI48_RS19150	0.15	-0.4
4,302,560	-		HGI48_RS19150	0.15	-1.8
4,302,642	+		HGI48_RS19150	0.20	+0.0
4,302,642	+		HGI48_RS19150	0.20	-1.6
4,302,643	-		HGI48_RS19150	0.20	-0.1
4,302,643	-		HGI48_RS19150	0.20	-0.2
4,302,993	+		HGI48_RS19150	0.42	-1.2
4,302,994	-		HGI48_RS19150	0.42	-0.2
4,303,090	-		HGI48_RS19150	0.48	-1.1
4,303,090	-		HGI48_RS19150	0.48	+0.8
4,303,233	+		HGI48_RS19150	0.57	+0.8
4,303,233	+		HGI48_RS19150	0.57	+0.4
4,303,233	+		HGI48_RS19150	0.57	+0.2
4,303,241	+				-0.8
4,303,241	+		HGI48_RS19150	0.57	-1.1
4,303,241	+		HGI48_RS19150	0.57	+1.2
4,303,241	+		HGI48_RS19150	0.57	+1.0
4,303,241	+		HGI48_RS19150	0.57	-1.0
4,303,241	+		HGI48_RS19150	0.57	-2.0
4,303,241	+		HGI48_RS19150	0.57	-1.2
4,303,241	+		HGI48_RS19150	0.57	-0.8
4,303,241	+		HGI48_RS19150	0.57	+0.6
4,303,241	+		HGI48_RS19150	0.57	-0.8
4,303,241	+		HGI48_RS19150	0.57	+0.8
4,303,242	-				+2.6
4,303,242	-		HGI48_RS19150	0.57	+1.3
4,303,242	-				+1.8
4,303,290	+		HGI48_RS19150	0.60	-1.1