Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17665

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,952,283	+		HGI48_RS17650	0.76	-0.2
3,952,283	+		HGI48_RS17650	0.76	+1.4
3,952,284	-		HGI48_RS17650	0.76	+0.1
3,952,292	+		HGI48_RS17650	0.78	-1.9
3,952,421	+				-2.1
3,952,421	+				+0.5
3,952,421	+				-0.3
3,952,421	+				+0.4
3,952,421	+				-0.5
3,952,421	+				-0.2
3,952,421	+				+0.7
3,952,422	-				+0.0
3,952,422	-				-2.3
3,952,422	-				+0.7
3,952,422	-				+0.1
3,952,422	-				-0.4
3,952,428	-				+0.7
3,952,705	+		HGI48_RS17660	0.14	-2.3
3,952,705	+		HGI48_RS17660	0.14	-0.2
3,952,705	+		HGI48_RS17660	0.14	-1.3
3,952,705	+		HGI48_RS17660	0.14	+0.0
3,952,705	+		HGI48_RS17660	0.14	-0.2
3,952,706	-		HGI48_RS17660	0.15	-0.6
3,952,774	+		HGI48_RS17660	0.25	-0.7
3,952,774	+				-0.9
3,952,774	+		HGI48_RS17660	0.25	-0.4
3,952,775	-		HGI48_RS17660	0.25	-0.9
3,952,775	-		HGI48_RS17660	0.25	-0.7
3,952,775	-				+0.7
3,952,775	-		HGI48_RS17660	0.25	-0.2
3,952,775	-		HGI48_RS17660	0.25	-0.2
3,952,886	-		HGI48_RS17660	0.42	+0.7
3,952,891	+		HGI48_RS17660	0.43	-0.4
3,953,044	+		HGI48_RS17660	0.67	+0.4
3,953,044	+		HGI48_RS17660	0.67	+2.0
3,953,044	+		HGI48_RS17660	0.67	-0.9
3,953,044	+		HGI48_RS17660	0.67	+0.0
3,953,044	+		HGI48_RS17660	0.67	-0.4
3,953,045	-		HGI48_RS17660	0.67	+0.9
3,953,045	-		HGI48_RS17660	0.67	-0.5
3,953,045	-		HGI48_RS17660	0.67	-1.1
3,953,045	-		HGI48_RS17660	0.67	-1.1
3,953,045	-		HGI48_RS17660	0.67	+0.1
3,953,045	-		HGI48_RS17660	0.67	-0.4
3,953,045	-				+1.4
3,953,114	+		HGI48_RS17660	0.77	-1.3
3,953,114	+		HGI48_RS17660	0.77	-1.0
3,953,155	+		HGI48_RS17660	0.84	-0.2
3,953,156	-		HGI48_RS17660	0.84	-1.3
3,953,170	+		HGI48_RS17660	0.86	-1.9
3,953,170	+		HGI48_RS17660	0.86	+1.5
3,953,171	-		HGI48_RS17660	0.86	-1.9
3,953,173	+		HGI48_RS17660	0.87	-1.6
3,953,174	-				-0.9
3,953,174	-		HGI48_RS17660	0.87	-1.6
3,953,174	-				+0.7
3,953,174	-		HGI48_RS17660	0.87	+0.4
3,953,217	+				+0.1
3,953,217	+				-0.9
3,953,217	+				-0.4
3,953,217	+				+0.1
3,953,217	+				-2.3
3,953,218	-				+0.1
3,953,218	-				-0.1
3,953,218	-				+0.7
3,953,239	+				-0.3
3,953,239	+				+1.6
3,953,240	-				-1.5
3,953,240	-				+0.3
3,953,240	-				-0.2
3,953,240	-				+1.3
3,953,265	+				-0.9
3,953,364	-				+0.6
3,953,525	+		HGI48_RS17665	0.14	+0.3
3,953,525	+		HGI48_RS17665	0.14	-0.2
3,953,525	+		HGI48_RS17665	0.14	-0.0
3,953,525	+		HGI48_RS17665	0.14	+1.2
3,953,525	+		HGI48_RS17665	0.14	-0.1
3,953,526	-		HGI48_RS17665	0.14	-0.5
3,953,526	-		HGI48_RS17665	0.14	-0.0
3,953,526	-		HGI48_RS17665	0.14	-0.9
3,953,647	+		HGI48_RS17665	0.21	+1.2
3,953,647	+		HGI48_RS17665	0.21	+1.1
3,953,647	+		HGI48_RS17665	0.21	+1.1
3,953,648	-		HGI48_RS17665	0.21	-0.0
3,953,648	-		HGI48_RS17665	0.21	+0.6
3,953,675	+		HGI48_RS17665	0.23	+0.8
3,953,675	+				+1.7
3,953,675	+		HGI48_RS17665	0.23	-0.9
3,953,758	-		HGI48_RS17665	0.27	-1.3
3,953,758	-		HGI48_RS17665	0.27	-0.1
3,953,813	+		HGI48_RS17665	0.30	+0.7
3,953,937	+		HGI48_RS17665	0.37	+0.3
3,953,937	+		HGI48_RS17665	0.37	+0.2
3,953,938	-				-0.3
3,954,240	+				+1.3
3,954,253	+		HGI48_RS17665	0.55	+0.2
3,954,254	-		HGI48_RS17665	0.55	-1.9
3,954,254	-		HGI48_RS17665	0.55	-1.3
3,954,254	-		HGI48_RS17665	0.55	+1.5
3,954,316	-		HGI48_RS17665	0.58	-1.1
3,954,401	+		HGI48_RS17665	0.63	-2.1
3,954,402	-		HGI48_RS17665	0.63	-1.3
3,954,402	-		HGI48_RS17665	0.63	-0.3
3,954,455	+		HGI48_RS17665	0.66	-0.9
3,954,511	+		HGI48_RS17665	0.69	-0.5
3,954,511	+		HGI48_RS17665	0.69	+0.4
3,954,511	+		HGI48_RS17665	0.69	+1.1
3,954,511	+		HGI48_RS17665	0.69	+0.5
3,954,511	+		HGI48_RS17665	0.69	-0.5
3,954,512	-		HGI48_RS17665	0.69	-1.9
3,954,512	-		HGI48_RS17665	0.69	+1.2
3,954,512	-		HGI48_RS17665	0.69	+0.6
3,954,512	-		HGI48_RS17665	0.69	-0.7
3,954,514	+		HGI48_RS17665	0.69	-1.3
3,954,514	+		HGI48_RS17665	0.69	+1.0
3,954,515	-		HGI48_RS17665	0.69	+0.1
3,954,515	-		HGI48_RS17665	0.69	-2.1
3,954,577	+		HGI48_RS17665	0.73	+0.4
3,954,578	-		HGI48_RS17665	0.73	-0.2
3,954,589	-		HGI48_RS17665	0.74	+0.2
3,954,589	-		HGI48_RS17665	0.74	-0.9
3,954,622	+		HGI48_RS17665	0.75	-0.3
3,954,622	+		HGI48_RS17665	0.75	+1.0
3,954,623	-		HGI48_RS17665	0.75	+0.2
3,954,623	-		HGI48_RS17665	0.75	+0.6
3,954,623	-		HGI48_RS17665	0.75	-1.9
3,954,623	-		HGI48_RS17665	0.75	+2.3
3,955,060	+				-0.5
3,955,060	+				-0.1
3,955,060	+				-1.3
3,955,060	+				-0.6
3,955,061	-				+1.2
3,955,061	-				-0.8
3,955,061	-				+0.9
3,955,066	+				-1.9
3,955,066	+				-3.1
3,955,067	-				+0.5
3,955,067	-				-1.0
3,955,067	-				+1.4
3,955,086	+				-0.8
3,955,087	-				+0.7
3,955,087	-				-0.3
3,955,087	-				-0.3
3,955,087	-				+1.4
3,955,101	+				+0.1
3,955,102	-				-2.8
3,955,107	+				+0.4
3,955,107	+				-2.8
3,955,108	-				-0.9
3,955,108	-				-0.9
3,955,108	-				+1.6
3,955,108	-				+0.3
3,955,265	+				+0.7
3,955,266	-				+0.7
3,955,398	+				-1.6
3,955,444	-				-2.4
3,955,444	-				+0.7
3,955,447	+				+0.1
3,955,447	+				+1.6
3,955,448	-				+0.1
3,955,448	-				+0.1
3,955,476	+				-2.1
3,955,476	+				-0.5
3,955,477	-				+0.5
3,955,477	-				+0.1
3,955,477	-				-1.3
3,955,477	-				-0.1
3,955,477	-				+0.9
3,955,731	+				+2.1
3,955,731	+				-2.3
3,955,731	+				-1.6
3,955,731	+				+0.8
3,955,731	+				+1.7
3,955,732	-				-0.4
3,955,732	-				+1.4
3,955,737	+				-0.2
3,955,738	-				+0.3
3,955,738	-				+1.7
3,955,738	-				-0.7
3,955,738	-				+0.7