Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12610

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,755,680	+		HGI48_RS12605	0.58	-2.0
2,755,680	+		HGI48_RS12605	0.58	-1.2
2,755,799	+		HGI48_RS12605	0.66	-1.9
2,755,799	+		HGI48_RS12605	0.66	-2.4
2,755,799	+		HGI48_RS12605	0.66	+0.2
2,755,799	+		HGI48_RS12605	0.66	+0.7
2,755,799	+		HGI48_RS12605	0.66	-0.2
2,755,799	+		HGI48_RS12605	0.66	-1.6
2,755,799	+		HGI48_RS12605	0.66	-1.2
2,755,799	+		HGI48_RS12605	0.66	-0.5
2,755,799	+		HGI48_RS12605	0.66	+0.8
2,755,799	+		HGI48_RS12605	0.66	-0.2
2,755,800	-		HGI48_RS12605	0.66	+0.8
2,755,800	-		HGI48_RS12605	0.66	-2.6
2,755,800	-				+1.2
2,755,824	-		HGI48_RS12605	0.67	-1.0
2,755,852	+				+1.6
2,755,852	+				+1.0
2,755,852	+		HGI48_RS12605	0.69	-1.6
2,755,852	+		HGI48_RS12605	0.69	-1.1
2,755,853	-		HGI48_RS12605	0.69	-1.7
2,755,938	+		HGI48_RS12605	0.74	-0.9
2,755,938	+		HGI48_RS12605	0.74	-2.9
2,755,939	-				+0.4
2,755,939	-		HGI48_RS12605	0.74	-0.6
2,755,949	+		HGI48_RS12605	0.75	-2.3
2,755,949	+		HGI48_RS12605	0.75	-0.5
2,755,949	+		HGI48_RS12605	0.75	-1.0
2,755,949	+		HGI48_RS12605	0.75	+0.4
2,755,949	+		HGI48_RS12605	0.75	+0.1
2,755,949	+		HGI48_RS12605	0.75	-1.3
2,755,949	+		HGI48_RS12605	0.75	-1.4
2,755,949	+		HGI48_RS12605	0.75	-0.4
2,755,950	-		HGI48_RS12605	0.75	-1.2
2,755,950	-		HGI48_RS12605	0.75	-0.2
2,755,950	-		HGI48_RS12605	0.75	-2.2
2,756,079	+				+0.4
2,756,079	+		HGI48_RS12605	0.83	-1.7
2,756,086	-				+0.4
2,756,179	+		HGI48_RS12605	0.89	+0.1
2,756,179	+		HGI48_RS12605	0.89	-2.2
2,756,180	-		HGI48_RS12605	0.89	-1.4
2,756,180	-		HGI48_RS12605	0.89	+1.1
2,756,180	-		HGI48_RS12605	0.89	+0.1
2,756,180	-		HGI48_RS12605	0.89	-1.0
2,756,180	-				+0.4
2,756,180	-		HGI48_RS12605	0.89	+0.0
2,756,197	-				-0.2
2,756,304	+				-1.6
2,756,305	-				-0.2
2,756,314	+				-0.8
2,756,315	-				-0.9
2,756,315	-				-0.6
2,756,315	-				-0.3
2,756,315	-				-0.6
2,756,446	+				-1.6
2,756,446	+				-0.1
2,756,447	-				+0.1
2,756,447	-				-1.0
2,756,449	+				-1.0
2,756,449	+				-2.2
2,756,449	+				+0.2
2,756,491	+				+0.6
2,756,491	+				+0.9
2,756,547	-				+0.2
2,756,551	-				-2.0
2,756,570	-				+0.4
2,756,570	-				+0.5
2,756,597	+				-0.1
2,756,606	+				+1.5
2,756,606	+				+0.8
2,756,610	+				+0.0
2,756,611	-				+0.7
2,756,611	-				+1.7
2,756,611	-				-0.9
2,756,622	+				-0.6
2,756,623	-				-1.0
2,756,689	+				+0.2
2,756,689	+				-0.6
2,756,703	+				+1.0
2,756,704	-				-1.6
2,756,704	-				-1.2
2,756,704	-				-2.0
2,756,730	+				+0.4
2,756,731	-				-0.8
2,756,942	-				-1.2
2,756,942	-				-2.4
2,756,954	-		HGI48_RS12610	0.10	-0.3
2,756,954	-		HGI48_RS12610	0.10	-1.6
2,756,954	-		HGI48_RS12610	0.10	+0.8
2,756,954	-		HGI48_RS12610	0.10	-0.3
2,757,069	-		HGI48_RS12610	0.15	+0.8
2,757,069	-		HGI48_RS12610	0.15	-2.7
2,757,069	-		HGI48_RS12610	0.15	-0.2
2,757,102	+		HGI48_RS12610	0.16	+0.1
2,757,103	-		HGI48_RS12610	0.16	-0.6
2,757,106	+		HGI48_RS12610	0.16	+0.1
2,757,325	+		HGI48_RS12610	0.24	+0.4
2,757,325	+				-1.2
2,757,325	+		HGI48_RS12610	0.24	+0.9
2,757,325	+		HGI48_RS12610	0.24	-1.4
2,757,325	+		HGI48_RS12610	0.24	+0.1
2,757,427	+		HGI48_RS12610	0.28	+0.3
2,757,437	-		HGI48_RS12610	0.28	+0.4
2,757,438	+		HGI48_RS12610	0.28	-1.9
2,757,438	+		HGI48_RS12610	0.28	+1.1
2,757,438	+		HGI48_RS12610	0.28	-0.2
2,757,438	+		HGI48_RS12610	0.28	+0.1
2,757,438	+		HGI48_RS12610	0.28	-1.0
2,757,438	+		HGI48_RS12610	0.28	+0.7
2,757,438	+		HGI48_RS12610	0.28	+0.2
2,757,439	-		HGI48_RS12610	0.28	+0.7
2,757,439	-		HGI48_RS12610	0.28	+1.7
2,757,439	-		HGI48_RS12610	0.28	+0.8
2,757,439	-		HGI48_RS12610	0.28	+0.2
2,757,439	-		HGI48_RS12610	0.28	+0.4
2,757,462	+		HGI48_RS12610	0.29	-1.6
2,757,479	+		HGI48_RS12610	0.30	+1.1
2,757,480	-				+1.8
2,757,480	-		HGI48_RS12610	0.30	+1.9
2,757,525	+		HGI48_RS12610	0.32	-0.9
2,757,525	+		HGI48_RS12610	0.32	+0.9
2,757,526	-		HGI48_RS12610	0.32	-0.1
2,757,561	-		HGI48_RS12610	0.33	-2.2
2,757,751	+		HGI48_RS12610	0.40	+0.4
2,757,918	+				+0.4
2,757,919	-		HGI48_RS12610	0.46	-0.5
2,758,377	+		HGI48_RS12610	0.63	-0.1
2,758,507	+		HGI48_RS12610	0.68	-1.6
2,758,511	+		HGI48_RS12610	0.68	-0.3
2,758,752	-		HGI48_RS12610	0.77	-0.3
2,758,752	-		HGI48_RS12610	0.77	+0.4
2,758,752	-		HGI48_RS12610	0.77	-0.6
2,758,754	+		HGI48_RS12610	0.78	-0.9
2,758,755	-		HGI48_RS12610	0.78	-0.4
2,758,755	-		HGI48_RS12610	0.78	-0.4
2,758,794	+		HGI48_RS12610	0.79	-1.5
2,758,795	-		HGI48_RS12610	0.79	+0.2
2,759,237	-				-0.6
2,759,237	-				+1.1
2,759,241	-				+0.5
2,759,241	-				-1.7
2,759,246	-				+0.4
2,759,246	-				-0.5
2,759,289	+				-0.9
2,759,432	+				-0.2
2,759,457	+				+1.3
2,759,475	+				-0.3
2,759,476	-				-0.2
2,759,479	+				-0.9
2,759,479	+				+0.8
2,759,479	+				+0.0
2,759,480	-				+0.0
2,759,480	-				-0.6
2,759,496	+				+0.3
2,759,501	+				-0.9
2,759,501	+				-1.2
2,759,501	+				+0.0
2,759,501	+				+1.7
2,759,501	+				-1.2
2,759,501	+				+0.4
2,759,501	+				-0.2
2,759,501	+				-2.0
2,759,502	-				-1.9
2,759,502	-				-0.3
2,759,502	-				-3.4
2,759,502	-				-0.5
2,759,502	-				+1.8
2,759,502	-				+0.4
2,759,506	+				-2.9
2,759,506	+				-0.3
2,759,507	-				-1.6
2,759,543	+				-1.2
2,759,544	-				+0.8
2,759,565	-				+0.4
2,759,565	-				-2.2
2,759,591	-				+0.8
2,759,591	-				-1.9
2,759,666	-				-0.6
2,759,671	+				+0.9
2,759,708	+				-0.4
2,759,708	+				+0.5
2,759,709	-				-0.6
2,759,709	-				-1.6
2,759,710	+				+1.1
2,759,716	+				+0.3
2,759,823	-				+1.0
2,759,860	+				+0.3
2,759,861	-				-1.2
2,759,861	-				-1.6
2,759,861	-				-0.8
2,759,939	+		HGI48_RS12615	0.20	+1.3
2,759,943	+		HGI48_RS12615	0.21	+0.3
2,759,943	+		HGI48_RS12615	0.21	-0.3
2,759,944	-		HGI48_RS12615	0.21	+0.5
2,759,944	-		HGI48_RS12615	0.21	+0.4
2,759,949	+		HGI48_RS12615	0.22	-1.6
2,759,949	+		HGI48_RS12615	0.22	-0.2
2,759,950	-		HGI48_RS12615	0.22	-1.6
2,759,950	-		HGI48_RS12615	0.22	+1.4
2,760,027	-		HGI48_RS12615	0.35	-1.6
2,760,050	+		HGI48_RS12615	0.39	-1.2
2,760,050	+		HGI48_RS12615	0.39	-2.4
2,760,050	+		HGI48_RS12615	0.39	+1.1
2,760,051	-				-0.2
2,760,051	-		HGI48_RS12615	0.39	+1.3
2,760,051	-		HGI48_RS12615	0.39	-0.8
2,760,051	-		HGI48_RS12615	0.39	+0.7
2,760,051	-		HGI48_RS12615	0.39	+1.9
2,760,052	+		HGI48_RS12615	0.39	-0.9
2,760,053	-		HGI48_RS12615	0.39	+1.2
2,760,053	-		HGI48_RS12615	0.39	+1.6
2,760,053	-		HGI48_RS12615	0.39	+1.7
2,760,110	+		HGI48_RS12615	0.48	+1.6
2,760,184	-		HGI48_RS12615	0.60	-2.6
2,760,184	-		HGI48_RS12615	0.60	+1.9
2,760,229	-		HGI48_RS12615	0.68	+0.4
2,760,245	+		HGI48_RS12615	0.70	+2.2
2,760,245	+		HGI48_RS12615	0.70	-0.1
2,760,282	-		HGI48_RS12615	0.76	+0.4
2,760,282	-		HGI48_RS12615	0.76	+0.8
2,760,353	+		HGI48_RS12615	0.88	+1.3