Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09010

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,939,813	-		HGI48_RS09005	0.52	+0.3
1,939,833	+		HGI48_RS09005	0.53	-1.7
1,939,833	+		HGI48_RS09005	0.53	-1.4
1,939,833	+		HGI48_RS09005	0.53	+1.2
1,939,833	+		HGI48_RS09005	0.53	-2.3
1,939,834	-		HGI48_RS09005	0.53	+1.6
1,939,834	-		HGI48_RS09005	0.53	-0.7
1,939,834	-		HGI48_RS09005	0.53	+0.0
1,939,834	-		HGI48_RS09005	0.53	+0.9
1,939,834	-		HGI48_RS09005	0.53	-2.4
1,939,834	-		HGI48_RS09005	0.53	-2.7
1,939,872	-				+0.4
1,939,872	-		HGI48_RS09005	0.56	-1.0
1,939,897	-		HGI48_RS09005	0.57	-1.3
1,939,897	-		HGI48_RS09005	0.57	+0.1
1,939,934	+				-0.2
1,939,948	-		HGI48_RS09005	0.61	-0.2
1,939,967	+		HGI48_RS09005	0.62	+0.8
1,939,968	-		HGI48_RS09005	0.62	+1.3
1,939,968	-		HGI48_RS09005	0.62	-1.9
1,939,990	-		HGI48_RS09005	0.63	-0.7
1,940,014	-		HGI48_RS09005	0.65	-2.3
1,940,019	+		HGI48_RS09005	0.65	-0.5
1,940,091	+		HGI48_RS09005	0.70	-0.8
1,940,091	+		HGI48_RS09005	0.70	-0.7
1,940,092	-		HGI48_RS09005	0.70	-1.2
1,940,093	+		HGI48_RS09005	0.70	-2.2
1,940,093	+		HGI48_RS09005	0.70	-0.8
1,940,094	-		HGI48_RS09005	0.70	+0.1
1,940,094	-		HGI48_RS09005	0.70	+0.4
1,940,094	-		HGI48_RS09005	0.70	+0.0
1,940,094	-				+1.6
1,940,094	-		HGI48_RS09005	0.70	-0.1
1,940,094	-		HGI48_RS09005	0.70	+0.3
1,940,094	-		HGI48_RS09005	0.70	+0.0
1,940,130	+		HGI48_RS09005	0.72	-0.4
1,940,130	+				+2.0
1,940,130	+		HGI48_RS09005	0.72	-0.4
1,940,130	+		HGI48_RS09005	0.72	-0.2
1,940,130	+		HGI48_RS09005	0.72	-1.4
1,940,131	-		HGI48_RS09005	0.72	+0.7
1,940,131	-		HGI48_RS09005	0.72	+1.1
1,940,131	-		HGI48_RS09005	0.72	-0.4
1,940,174	-		HGI48_RS09005	0.75	+0.6
1,940,174	-		HGI48_RS09005	0.75	+0.3
1,940,232	+		HGI48_RS09005	0.79	-0.6
1,940,280	+		HGI48_RS09005	0.82	-0.4
1,940,310	+		HGI48_RS09005	0.84	+0.0
1,940,317	-				-0.2
1,940,325	+		HGI48_RS09005	0.85	+0.8
1,940,326	-		HGI48_RS09005	0.85	-1.7
1,940,326	-		HGI48_RS09005	0.85	-0.6
1,940,400	+				+1.6
1,940,400	+		HGI48_RS09005	0.90	+0.4
1,940,401	-		HGI48_RS09005	0.90	+0.7
1,940,401	-		HGI48_RS09005	0.90	-2.4
1,940,455	-				+0.3
1,940,480	+				-0.6
1,940,480	+				-1.6
1,940,481	-				-0.6
1,940,481	-				-2.6
1,940,523	+				-1.0
1,940,559	+				+0.0
1,940,560	-				-0.6
1,940,627	+				-2.2
1,940,632	+				+0.8
1,940,632	+				-1.2
1,940,633	-				-1.4
1,940,633	-				+2.0
1,940,633	-				+0.0
1,940,633	-				+0.6
1,940,633	-				+0.2
1,940,633	-				-0.4
1,940,633	-				+0.7
1,940,643	+				+0.2
1,940,659	+				+0.0
1,940,659	+				+0.8
1,940,660	-				-1.2
1,940,660	-				-1.2
1,940,665	+				+1.4
1,940,665	+				-1.3
1,940,666	-				+0.0
1,940,666	-				-1.1
1,940,666	-				+1.5
1,940,691	+				+0.0
1,940,692	-				+2.4
1,940,692	-				+1.4
1,940,696	+				-0.1
1,940,696	+				+0.8
1,940,696	+				-0.3
1,940,696	+				-2.9
1,940,696	+				+1.3
1,940,696	+				-0.1
1,940,696	+				+0.4
1,940,696	+				-0.3
1,940,696	+				+2.2
1,940,697	-				+0.2
1,940,697	-				-0.2
1,940,697	-				-1.2
1,940,697	-				-1.9
1,940,697	-				-0.4
1,940,697	-				-0.3
1,940,697	-				-1.7
1,940,697	-				-0.3
1,940,697	-				+0.1
1,940,815	+		HGI48_RS09010	0.11	-0.7
1,940,815	+				-1.2
1,940,815	+		HGI48_RS09010	0.11	+0.6
1,940,815	+		HGI48_RS09010	0.11	-0.7
1,940,815	+		HGI48_RS09010	0.11	-0.3
1,940,815	+		HGI48_RS09010	0.11	+0.5
1,940,815	+		HGI48_RS09010	0.11	-0.6
1,940,816	-		HGI48_RS09010	0.11	-0.6
1,940,816	-		HGI48_RS09010	0.11	-2.2
1,940,816	-		HGI48_RS09010	0.11	-1.6
1,940,816	-		HGI48_RS09010	0.11	-1.0
1,940,816	-		HGI48_RS09010	0.11	-1.4
1,940,818	-		HGI48_RS09010	0.11	+0.4
1,940,818	-		HGI48_RS09010	0.11	-0.6
1,940,829	+				-1.2
1,940,830	-		HGI48_RS09010	0.12	+0.9
1,940,897	-		HGI48_RS09010	0.19	-1.0
1,940,897	-		HGI48_RS09010	0.19	+0.7
1,941,112	+				+1.2
1,941,112	+				+1.2
1,941,112	+		HGI48_RS09010	0.40	+1.0
1,941,112	+		HGI48_RS09010	0.40	-0.1
1,941,112	+		HGI48_RS09010	0.40	-2.7
1,941,112	+		HGI48_RS09010	0.40	+0.5
1,941,112	+				+0.4
1,941,113	-		HGI48_RS09010	0.41	+0.1
1,941,180	+		HGI48_RS09010	0.47	+0.6
1,941,180	+		HGI48_RS09010	0.47	-0.9
1,941,181	-				-1.2
1,941,181	-		HGI48_RS09010	0.47	-0.9
1,941,280	+		HGI48_RS09010	0.57	-0.1
1,941,281	-		HGI48_RS09010	0.57	-1.6
1,941,281	-		HGI48_RS09010	0.57	-1.9
1,941,281	-		HGI48_RS09010	0.57	-3.3
1,941,295	+		HGI48_RS09010	0.59	-0.2
1,941,296	-		HGI48_RS09010	0.59	-2.2
1,941,296	-		HGI48_RS09010	0.59	-0.5
1,941,296	-		HGI48_RS09010	0.59	-2.2
1,941,296	-		HGI48_RS09010	0.59	-2.6
1,941,296	-				-1.2
1,941,296	-		HGI48_RS09010	0.59	-1.9
1,941,304	+		HGI48_RS09010	0.60	+0.7
1,941,305	-		HGI48_RS09010	0.60	+2.1
1,941,305	-		HGI48_RS09010	0.60	-0.9
1,941,343	+		HGI48_RS09010	0.63	-0.0
1,941,473	-		HGI48_RS09010	0.76	-1.6
1,941,473	-		HGI48_RS09010	0.76	-0.2
1,941,473	-				+1.6
1,941,473	-				-0.2
1,941,473	-		HGI48_RS09010	0.76	-2.2
1,941,473	-				+0.8
1,941,566	+		HGI48_RS09010	0.86	-3.4
1,941,619	+				+0.6
1,941,620	-				+0.8
1,941,655	+				+0.4
1,941,655	+				-1.4
1,941,655	+				-0.2
1,941,655	+				-0.6
1,941,655	+				+2.7
1,941,656	-				-0.7
1,941,656	-				-0.9
1,941,656	-				+0.5
1,941,656	-				-2.4
1,941,658	-				-0.1
1,941,709	+				+0.4
1,941,886	+		HGI48_RS09015	0.20	-0.1
1,941,886	+		HGI48_RS09015	0.20	-0.8
1,941,886	+		HGI48_RS09015	0.20	-0.6
1,941,886	+				-0.2
1,941,886	+		HGI48_RS09015	0.20	-2.2
1,941,886	+		HGI48_RS09015	0.20	+0.4
1,941,886	+		HGI48_RS09015	0.20	-0.6
1,941,886	+		HGI48_RS09015	0.20	-0.7
1,941,887	-				+0.8
1,941,887	-		HGI48_RS09015	0.20	-0.2
1,941,887	-		HGI48_RS09015	0.20	-0.1
1,941,887	-		HGI48_RS09015	0.20	-0.3
1,941,887	-		HGI48_RS09015	0.20	+0.1
1,941,887	-		HGI48_RS09015	0.20	+0.0
1,941,887	-		HGI48_RS09015	0.20	+0.2
1,941,887	-		HGI48_RS09015	0.20	+0.4
1,941,887	-		HGI48_RS09015	0.20	-1.2
1,941,887	-				+1.2
1,941,887	-		HGI48_RS09015	0.20	-0.6
1,941,909	+		HGI48_RS09015	0.23	+0.8
1,941,922	-		HGI48_RS09015	0.24	+2.4
1,942,119	+				-1.2
1,942,119	+		HGI48_RS09015	0.48	-0.2
1,942,120	-		HGI48_RS09015	0.48	-0.6
1,942,120	-		HGI48_RS09015	0.48	-1.2
1,942,120	-				+1.6
1,942,227	+		HGI48_RS09015	0.60	-0.3
1,942,227	+		HGI48_RS09015	0.60	+0.0
1,942,227	+		HGI48_RS09015	0.60	-1.6
1,942,228	-		HGI48_RS09015	0.60	-1.2
1,942,228	-		HGI48_RS09015	0.60	+0.9
1,942,228	-		HGI48_RS09015	0.60	+0.7
1,942,228	-				+0.4
1,942,228	-		HGI48_RS09015	0.60	-0.6
1,942,228	-		HGI48_RS09015	0.60	+1.4
1,942,228	-				-1.2
1,942,228	-		HGI48_RS09015	0.60	+0.6
1,942,228	-		HGI48_RS09015	0.60	-2.4
1,942,237	-				-1.2
1,942,237	-				+0.4
1,942,283	+		HGI48_RS09015	0.67	-1.8
1,942,283	+		HGI48_RS09015	0.67	+0.5
1,942,283	+		HGI48_RS09015	0.67	+1.3
1,942,304	+		HGI48_RS09015	0.69	-0.2
1,942,310	+				+1.4
1,942,311	-		HGI48_RS09015	0.70	+0.2
1,942,311	-		HGI48_RS09015	0.70	-0.8
1,942,434	+		HGI48_RS09015	0.85	-2.2
1,942,434	+		HGI48_RS09015	0.85	+0.6
1,942,434	+		HGI48_RS09015	0.85	-0.4
1,942,434	+		HGI48_RS09015	0.85	-1.1
1,942,435	-		HGI48_RS09015	0.85	-1.2
1,942,435	-		HGI48_RS09015	0.85	-1.9
1,942,435	-		HGI48_RS09015	0.85	+0.2
1,942,435	-		HGI48_RS09015	0.85	-0.2
1,942,503	-				+0.3
1,942,583	+				-1.0
1,942,601	+				+1.3
1,942,601	+				+0.4
1,942,601	+				+0.1
1,942,601	+				-0.0