Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08105

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS08100 and HGI48_RS08105 are separated by 108 nucleotidesHGI48_RS08105 and HGI48_RS08110 are separated by 2 nucleotidesHGI48_RS08110 and HGI48_RS08115 are separated by 84 nucleotides HGI48_RS08100: HGI48_RS08100 - nickel ABC transporter, nickel/metallophore periplasmic binding protein, at 1,741,039 to 1,742,613 _RS08100 HGI48_RS08105: HGI48_RS08105 - ABC transporter permease subunit, at 1,742,722 to 1,743,654 _RS08105 HGI48_RS08110: HGI48_RS08110 - ABC transporter permease subunit, at 1,743,657 to 1,744,478 _RS08110 HGI48_RS08115: HGI48_RS08115 - ABC transporter ATP-binding protein, at 1,744,563 to 1,745,376 _RS08115 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1741.788 kb on + strand, within HGI48_RS08100at 1741.788 kb on + strand, within HGI48_RS08100at 1741.826 kb on - strand, within HGI48_RS08100at 1741.875 kb on + strand, within HGI48_RS08100at 1741.875 kb on + strand, within HGI48_RS08100at 1742.141 kb on + strand, within HGI48_RS08100at 1742.141 kb on + strand, within HGI48_RS08100at 1742.141 kb on + strand, within HGI48_RS08100at 1742.149 kb on + strand, within HGI48_RS08100at 1742.149 kb on + strand, within HGI48_RS08100at 1742.149 kb on + strand, within HGI48_RS08100at 1742.150 kb on - strandat 1742.150 kb on - strand, within HGI48_RS08100at 1742.150 kb on - strand, within HGI48_RS08100at 1742.150 kb on - strand, within HGI48_RS08100at 1742.150 kb on - strand, within HGI48_RS08100at 1742.317 kb on + strand, within HGI48_RS08100at 1742.318 kb on - strand, within HGI48_RS08100at 1742.318 kb on - strand, within HGI48_RS08100at 1742.332 kb on + strand, within HGI48_RS08100at 1742.332 kb on + strand, within HGI48_RS08100at 1742.333 kb on - strand, within HGI48_RS08100at 1742.334 kb on + strand, within HGI48_RS08100at 1742.334 kb on + strand, within HGI48_RS08100at 1742.334 kb on + strand, within HGI48_RS08100at 1742.334 kb on + strand, within HGI48_RS08100at 1742.335 kb on - strand, within HGI48_RS08100at 1742.335 kb on - strand, within HGI48_RS08100at 1742.369 kb on - strand, within HGI48_RS08100at 1742.369 kb on - strand, within HGI48_RS08100at 1742.388 kb on - strand, within HGI48_RS08100at 1742.426 kb on + strand, within HGI48_RS08100at 1742.427 kb on - strand, within HGI48_RS08100at 1742.427 kb on - strand, within HGI48_RS08100at 1742.464 kb on + strandat 1742.465 kb on - strandat 1742.501 kb on + strandat 1742.502 kb on - strandat 1742.503 kb on + strandat 1742.503 kb on + strandat 1742.503 kb on + strandat 1742.503 kb on + strandat 1742.503 kb on + strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.504 kb on - strandat 1742.506 kb on - strandat 1742.506 kb on - strandat 1742.519 kb on - strandat 1742.581 kb on + strandat 1742.581 kb on + strandat 1742.582 kb on - strandat 1742.582 kb on - strandat 1742.635 kb on - strandat 1742.635 kb on - strandat 1742.702 kb on + strandat 1742.731 kb on + strandat 1742.731 kb on + strandat 1742.732 kb on - strandat 1742.873 kb on + strand, within HGI48_RS08105at 1742.873 kb on + strand, within HGI48_RS08105at 1742.873 kb on + strand, within HGI48_RS08105at 1742.873 kb on + strand, within HGI48_RS08105at 1742.874 kb on - strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1743.028 kb on + strand, within HGI48_RS08105at 1743.029 kb on - strand, within HGI48_RS08105at 1743.029 kb on - strand, within HGI48_RS08105at 1743.105 kb on + strand, within HGI48_RS08105at 1743.106 kb on - strandat 1743.106 kb on - strand, within HGI48_RS08105at 1743.118 kb on - strand, within HGI48_RS08105at 1743.228 kb on + strand, within HGI48_RS08105at 1743.229 kb on - strand, within HGI48_RS08105at 1743.280 kb on + strand, within HGI48_RS08105at 1743.280 kb on + strand, within HGI48_RS08105at 1743.281 kb on - strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strandat 1743.292 kb on + strandat 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strandat 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strandat 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.316 kb on - strand, within HGI48_RS08105at 1743.316 kb on - strand, within HGI48_RS08105at 1743.316 kb on - strand, within HGI48_RS08105at 1743.316 kb on - strandat 1743.340 kb on + strand, within HGI48_RS08105at 1743.341 kb on - strand, within HGI48_RS08105at 1743.341 kb on - strand, within HGI48_RS08105at 1743.341 kb on - strand, within HGI48_RS08105at 1743.350 kb on - strand, within HGI48_RS08105at 1743.350 kb on - strand, within HGI48_RS08105at 1743.559 kb on + strand, within HGI48_RS08105at 1743.559 kb on + strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.757 kb on - strand, within HGI48_RS08110at 1743.797 kb on + strand, within HGI48_RS08110at 1743.797 kb on + strand, within HGI48_RS08110at 1743.797 kb on + strand, within HGI48_RS08110at 1743.797 kb on + strandat 1743.797 kb on + strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.802 kb on - strand, within HGI48_RS08110at 1743.802 kb on - strand, within HGI48_RS08110at 1743.802 kb on - strand, within HGI48_RS08110at 1743.897 kb on + strand, within HGI48_RS08110at 1743.898 kb on - strand, within HGI48_RS08110at 1743.898 kb on - strand, within HGI48_RS08110at 1743.898 kb on - strand, within HGI48_RS08110at 1743.899 kb on + strand, within HGI48_RS08110at 1743.899 kb on + strand, within HGI48_RS08110at 1743.961 kb on - strand, within HGI48_RS08110at 1743.989 kb on - strand, within HGI48_RS08110at 1744.077 kb on - strand, within HGI48_RS08110at 1744.161 kb on + strand, within HGI48_RS08110at 1744.162 kb on - strand, within HGI48_RS08110at 1744.170 kb on + strand, within HGI48_RS08110at 1744.170 kb on + strand, within HGI48_RS08110at 1744.170 kb on + strand, within HGI48_RS08110at 1744.200 kb on + strand, within HGI48_RS08110at 1744.200 kb on + strand, within HGI48_RS08110at 1744.200 kb on + strand, within HGI48_RS08110at 1744.201 kb on - strand, within HGI48_RS08110at 1744.201 kb on - strand, within HGI48_RS08110at 1744.277 kb on - strand, within HGI48_RS08110at 1744.279 kb on + strand, within HGI48_RS08110at 1744.280 kb on - strand, within HGI48_RS08110at 1744.280 kb on - strand, within HGI48_RS08110at 1744.280 kb on - strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.347 kb on - strandat 1744.347 kb on - strandat 1744.347 kb on - strand, within HGI48_RS08110at 1744.482 kb on + strandat 1744.500 kb on + strandat 1744.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,741,788 + HGI48_RS08100 0.48 +0.1
1,741,788 + HGI48_RS08100 0.48 -0.4
1,741,826 - HGI48_RS08100 0.50 +0.1
1,741,875 + HGI48_RS08100 0.53 +0.8
1,741,875 + HGI48_RS08100 0.53 +0.2
1,742,141 + HGI48_RS08100 0.70 +0.4
1,742,141 + HGI48_RS08100 0.70 +0.2
1,742,141 + HGI48_RS08100 0.70 -2.4
1,742,149 + HGI48_RS08100 0.70 -1.6
1,742,149 + HGI48_RS08100 0.70 +0.7
1,742,149 + HGI48_RS08100 0.70 +0.0
1,742,150 - +1.0
1,742,150 - HGI48_RS08100 0.71 +0.7
1,742,150 - HGI48_RS08100 0.71 -0.6
1,742,150 - HGI48_RS08100 0.71 -2.9
1,742,150 - HGI48_RS08100 0.71 -1.9
1,742,317 + HGI48_RS08100 0.81 -0.7
1,742,318 - HGI48_RS08100 0.81 -0.6
1,742,318 - HGI48_RS08100 0.81 +0.4
1,742,332 + HGI48_RS08100 0.82 -1.2
1,742,332 + HGI48_RS08100 0.82 -1.9
1,742,333 - HGI48_RS08100 0.82 -0.3
1,742,334 + HGI48_RS08100 0.82 -1.2
1,742,334 + HGI48_RS08100 0.82 +0.3
1,742,334 + HGI48_RS08100 0.82 +0.2
1,742,334 + HGI48_RS08100 0.82 -0.7
1,742,335 - HGI48_RS08100 0.82 -0.6
1,742,335 - HGI48_RS08100 0.82 -1.4
1,742,369 - HGI48_RS08100 0.84 -1.4
1,742,369 - HGI48_RS08100 0.84 +0.0
1,742,388 - HGI48_RS08100 0.86 -0.5
1,742,426 + HGI48_RS08100 0.88 +0.7
1,742,427 - HGI48_RS08100 0.88 -0.4
1,742,427 - HGI48_RS08100 0.88 -0.0
1,742,464 + -1.2
1,742,465 - -1.6
1,742,501 + -0.2
1,742,502 - -0.6
1,742,503 + -0.6
1,742,503 + -0.1
1,742,503 + +0.5
1,742,503 + -0.4
1,742,503 + -0.2
1,742,504 - -0.6
1,742,504 - -0.9
1,742,504 - +0.3
1,742,504 - -0.2
1,742,504 - +0.8
1,742,504 - -0.7
1,742,504 - -1.4
1,742,504 - -1.9
1,742,504 - -2.6
1,742,504 - -2.2
1,742,506 - -1.0
1,742,506 - -1.4
1,742,519 - -0.3
1,742,581 + +1.1
1,742,581 + -0.3
1,742,582 - -1.9
1,742,582 - -0.8
1,742,635 - +0.6
1,742,635 - +1.1
1,742,702 + -1.9
1,742,731 + -0.0
1,742,731 + -1.2
1,742,732 - +0.4
1,742,873 + HGI48_RS08105 0.16 +0.1
1,742,873 + HGI48_RS08105 0.16 -0.6
1,742,873 + HGI48_RS08105 0.16 -1.0
1,742,873 + HGI48_RS08105 0.16 -0.1
1,742,874 - HGI48_RS08105 0.16 +1.3
1,742,927 + HGI48_RS08105 0.22 -0.0
1,742,927 + HGI48_RS08105 0.22 -0.8
1,742,927 + HGI48_RS08105 0.22 -0.6
1,742,927 + HGI48_RS08105 0.22 -1.2
1,742,927 + HGI48_RS08105 0.22 -0.1
1,742,927 + HGI48_RS08105 0.22 +0.0
1,742,928 - HGI48_RS08105 0.22 -1.8
1,742,928 - HGI48_RS08105 0.22 -0.6
1,742,928 - HGI48_RS08105 0.22 +0.2
1,742,928 - HGI48_RS08105 0.22 -1.1
1,742,928 - HGI48_RS08105 0.22 +1.0
1,742,928 - HGI48_RS08105 0.22 +0.4
1,742,928 - HGI48_RS08105 0.22 -0.0
1,742,928 - HGI48_RS08105 0.22 -0.9
1,742,928 - HGI48_RS08105 0.22 +1.4
1,742,928 - HGI48_RS08105 0.22 +1.5
1,742,928 - HGI48_RS08105 0.22 +0.0
1,743,028 + HGI48_RS08105 0.33 -0.1
1,743,029 - HGI48_RS08105 0.33 -0.5
1,743,029 - HGI48_RS08105 0.33 -2.4
1,743,105 + HGI48_RS08105 0.41 -0.0
1,743,106 - +1.4
1,743,106 - HGI48_RS08105 0.41 -2.6
1,743,118 - HGI48_RS08105 0.42 -1.6
1,743,228 + HGI48_RS08105 0.54 -2.6
1,743,229 - HGI48_RS08105 0.54 +1.6
1,743,280 + HGI48_RS08105 0.60 -1.9
1,743,280 + HGI48_RS08105 0.60 +0.9
1,743,281 - HGI48_RS08105 0.60 -0.2
1,743,292 + HGI48_RS08105 0.61 -0.3
1,743,292 + HGI48_RS08105 0.61 -2.2
1,743,292 + HGI48_RS08105 0.61 -0.7
1,743,292 + +0.8
1,743,292 + +2.4
1,743,292 + HGI48_RS08105 0.61 -0.2
1,743,292 + HGI48_RS08105 0.61 +0.2
1,743,292 + HGI48_RS08105 0.61 +0.5
1,743,292 + HGI48_RS08105 0.61 -0.0
1,743,292 + HGI48_RS08105 0.61 -0.8
1,743,292 + HGI48_RS08105 0.61 -2.4
1,743,292 + +1.4
1,743,292 + HGI48_RS08105 0.61 +0.0
1,743,292 + HGI48_RS08105 0.61 -0.1
1,743,293 - HGI48_RS08105 0.61 +0.6
1,743,293 - HGI48_RS08105 0.61 -1.4
1,743,293 - -1.2
1,743,293 - HGI48_RS08105 0.61 -0.7
1,743,293 - HGI48_RS08105 0.61 +1.5
1,743,293 - HGI48_RS08105 0.61 +0.3
1,743,293 - HGI48_RS08105 0.61 +0.8
1,743,293 - HGI48_RS08105 0.61 -0.9
1,743,293 - HGI48_RS08105 0.61 -0.6
1,743,293 - HGI48_RS08105 0.61 +0.6
1,743,293 - HGI48_RS08105 0.61 +0.2
1,743,315 + HGI48_RS08105 0.64 -1.0
1,743,315 + HGI48_RS08105 0.64 -0.6
1,743,315 + HGI48_RS08105 0.64 +1.1
1,743,315 + HGI48_RS08105 0.64 -0.4
1,743,315 + HGI48_RS08105 0.64 -0.8
1,743,316 - HGI48_RS08105 0.64 +0.7
1,743,316 - HGI48_RS08105 0.64 -1.0
1,743,316 - HGI48_RS08105 0.64 -0.0
1,743,316 - -0.6
1,743,340 + HGI48_RS08105 0.66 +0.0
1,743,341 - HGI48_RS08105 0.66 -0.4
1,743,341 - HGI48_RS08105 0.66 +0.1
1,743,341 - HGI48_RS08105 0.66 -1.6
1,743,350 - HGI48_RS08105 0.67 -0.2
1,743,350 - HGI48_RS08105 0.67 +0.0
1,743,559 + HGI48_RS08105 0.90 +0.3
1,743,559 + HGI48_RS08105 0.90 +0.1
1,743,560 - HGI48_RS08105 0.90 -0.2
1,743,560 - HGI48_RS08105 0.90 +0.0
1,743,560 - HGI48_RS08105 0.90 -1.7
1,743,560 - HGI48_RS08105 0.90 +0.7
1,743,560 - HGI48_RS08105 0.90 -0.4
1,743,560 - HGI48_RS08105 0.90 +1.1
1,743,757 - HGI48_RS08110 0.12 -3.1
1,743,797 + HGI48_RS08110 0.17 -0.3
1,743,797 + HGI48_RS08110 0.17 -2.6
1,743,797 + HGI48_RS08110 0.17 -1.2
1,743,797 + +2.2
1,743,797 + HGI48_RS08110 0.17 +0.9
1,743,798 - HGI48_RS08110 0.17 -0.8
1,743,798 - HGI48_RS08110 0.17 -0.6
1,743,798 - HGI48_RS08110 0.17 +1.0
1,743,798 - HGI48_RS08110 0.17 -1.6
1,743,798 - HGI48_RS08110 0.17 +1.0
1,743,798 - HGI48_RS08110 0.17 +0.4
1,743,798 - HGI48_RS08110 0.17 +0.1
1,743,801 + HGI48_RS08110 0.18 +0.1
1,743,801 + HGI48_RS08110 0.18 -0.6
1,743,801 + HGI48_RS08110 0.18 -0.7
1,743,801 + HGI48_RS08110 0.18 +1.0
1,743,802 - HGI48_RS08110 0.18 +0.6
1,743,802 - HGI48_RS08110 0.18 +0.9
1,743,802 - HGI48_RS08110 0.18 -1.2
1,743,897 + HGI48_RS08110 0.29 -0.4
1,743,898 - HGI48_RS08110 0.29 -1.2
1,743,898 - HGI48_RS08110 0.29 -0.2
1,743,898 - HGI48_RS08110 0.29 +1.6
1,743,899 + HGI48_RS08110 0.29 -0.9
1,743,899 + HGI48_RS08110 0.29 -0.1
1,743,961 - HGI48_RS08110 0.37 -0.6
1,743,989 - HGI48_RS08110 0.40 -0.7
1,744,077 - HGI48_RS08110 0.51 +0.7
1,744,161 + HGI48_RS08110 0.61 -0.3
1,744,162 - HGI48_RS08110 0.61 -2.8
1,744,170 + HGI48_RS08110 0.62 -0.2
1,744,170 + HGI48_RS08110 0.62 +1.0
1,744,170 + HGI48_RS08110 0.62 +0.8
1,744,200 + HGI48_RS08110 0.66 -2.4
1,744,200 + HGI48_RS08110 0.66 +1.4
1,744,200 + HGI48_RS08110 0.66 +0.4
1,744,201 - HGI48_RS08110 0.66 -1.1
1,744,201 - HGI48_RS08110 0.66 +0.8
1,744,277 - HGI48_RS08110 0.75 -1.2
1,744,279 + HGI48_RS08110 0.76 +0.6
1,744,280 - HGI48_RS08110 0.76 -0.6
1,744,280 - HGI48_RS08110 0.76 -0.6
1,744,280 - HGI48_RS08110 0.76 -0.2
1,744,346 + HGI48_RS08110 0.84 -0.8
1,744,346 + HGI48_RS08110 0.84 -1.9
1,744,346 + HGI48_RS08110 0.84 -0.6
1,744,346 + HGI48_RS08110 0.84 +1.1
1,744,346 + HGI48_RS08110 0.84 -0.2
1,744,346 + HGI48_RS08110 0.84 -1.9
1,744,347 - +1.1
1,744,347 - -0.6
1,744,347 - HGI48_RS08110 0.84 -0.2
1,744,482 + +0.6
1,744,500 + -0.2
1,744,501 - -0.1

Or see this region's nucleotide sequence