Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07040

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,492,029	-		HGI48_RS07035	0.20	-1.5
1,492,029	-		HGI48_RS07035	0.20	+0.3
1,492,073	+		HGI48_RS07035	0.24	-0.2
1,492,073	+		HGI48_RS07035	0.24	+1.4
1,492,074	-		HGI48_RS07035	0.24	-0.5
1,492,074	-		HGI48_RS07035	0.24	-0.4
1,492,074	-		HGI48_RS07035	0.24	-1.5
1,492,104	+		HGI48_RS07035	0.26	-0.7
1,492,104	+		HGI48_RS07035	0.26	-1.5
1,492,142	+		HGI48_RS07035	0.30	-2.2
1,492,143	-		HGI48_RS07035	0.30	-1.5
1,492,143	-		HGI48_RS07035	0.30	+0.2
1,492,158	+		HGI48_RS07035	0.31	-0.1
1,492,158	+		HGI48_RS07035	0.31	-0.7
1,492,158	+				-1.1
1,492,159	-		HGI48_RS07035	0.31	+0.8
1,492,242	+		HGI48_RS07035	0.38	-2.7
1,492,243	-		HGI48_RS07035	0.38	-1.3
1,492,249	-		HGI48_RS07035	0.39	-1.1
1,492,255	-		HGI48_RS07035	0.39	-2.1
1,492,339	+		HGI48_RS07035	0.46	-0.1
1,492,339	+		HGI48_RS07035	0.46	-1.4
1,492,340	-		HGI48_RS07035	0.46	+0.3
1,492,340	-		HGI48_RS07035	0.46	-0.8
1,492,340	-		HGI48_RS07035	0.46	-1.1
1,492,365	-		HGI48_RS07035	0.48	+0.1
1,492,413	+		HGI48_RS07035	0.52	+1.4
1,492,417	+		HGI48_RS07035	0.53	-2.3
1,492,417	+		HGI48_RS07035	0.53	-1.0
1,492,418	-		HGI48_RS07035	0.53	-0.3
1,492,418	-		HGI48_RS07035	0.53	-1.3
1,492,418	-		HGI48_RS07035	0.53	-0.8
1,492,455	-		HGI48_RS07035	0.56	+0.3
1,492,455	-		HGI48_RS07035	0.56	-0.3
1,492,469	+				-0.1
1,492,502	-		HGI48_RS07035	0.60	-1.8
1,492,503	+		HGI48_RS07035	0.60	+0.7
1,492,503	+		HGI48_RS07035	0.60	+1.3
1,492,503	+		HGI48_RS07035	0.60	-0.4
1,492,504	-		HGI48_RS07035	0.60	-1.5
1,492,504	-		HGI48_RS07035	0.60	-0.2
1,492,514	+		HGI48_RS07035	0.61	-1.1
1,492,596	+		HGI48_RS07035	0.68	-2.3
1,492,596	+		HGI48_RS07035	0.68	+0.5
1,492,597	-		HGI48_RS07035	0.68	-0.9
1,492,618	+				-0.1
1,492,619	-		HGI48_RS07035	0.70	-1.7
1,492,620	+		HGI48_RS07035	0.70	-0.1
1,492,639	-		HGI48_RS07035	0.71	-0.7
1,492,674	-		HGI48_RS07035	0.74	-2.1
1,492,678	+		HGI48_RS07035	0.74	-1.5
1,492,678	+		HGI48_RS07035	0.74	-0.4
1,492,679	-		HGI48_RS07035	0.75	+0.5
1,492,744	+		HGI48_RS07035	0.80	+0.7
1,492,744	+		HGI48_RS07035	0.80	+0.5
1,492,744	+		HGI48_RS07035	0.80	-0.2
1,492,744	+		HGI48_RS07035	0.80	+0.5
1,492,744	+				+0.9
1,492,745	-		HGI48_RS07035	0.80	+0.1
1,492,745	-		HGI48_RS07035	0.80	-1.2
1,492,745	-		HGI48_RS07035	0.80	+0.1
1,492,745	-		HGI48_RS07035	0.80	-0.8
1,492,745	-		HGI48_RS07035	0.80	+1.1
1,492,764	+		HGI48_RS07035	0.82	-0.8
1,492,765	-		HGI48_RS07035	0.82	-1.8
1,492,766	+		HGI48_RS07035	0.82	+0.7
1,492,832	+		HGI48_RS07035	0.87	+0.3
1,492,848	+		HGI48_RS07035	0.89	-0.5
1,492,940	+				-1.8
1,492,941	-				+0.9
1,492,984	+				+2.6
1,493,118	+		HGI48_RS07040	0.19	-0.1
1,493,119	-		HGI48_RS07040	0.19	-0.4
1,493,139	+		HGI48_RS07040	0.22	+0.7
1,493,140	-		HGI48_RS07040	0.22	-1.5
1,493,140	-		HGI48_RS07040	0.22	-1.5
1,493,153	-		HGI48_RS07040	0.24	-0.8
1,493,153	-		HGI48_RS07040	0.24	+0.7
1,493,161	+		HGI48_RS07040	0.26	+0.8
1,493,162	-		HGI48_RS07040	0.26	-0.5
1,493,186	+		HGI48_RS07040	0.29	-2.3
1,493,187	-				+0.9
1,493,189	-		HGI48_RS07040	0.30	-0.1
1,493,240	+		HGI48_RS07040	0.37	-2.8
1,493,241	-		HGI48_RS07040	0.37	+0.1
1,493,241	-		HGI48_RS07040	0.37	+0.4
1,493,244	-				-0.1
1,493,244	-		HGI48_RS07040	0.38	-0.2
1,493,254	+		HGI48_RS07040	0.39	-1.9
1,493,254	+		HGI48_RS07040	0.39	-0.1
1,493,255	-				-0.5
1,493,255	-		HGI48_RS07040	0.39	-2.7
1,493,312	-		HGI48_RS07040	0.47	+0.0
1,493,338	+		HGI48_RS07040	0.51	-0.3
1,493,339	-		HGI48_RS07040	0.51	+0.1
1,493,390	+		HGI48_RS07040	0.59	+0.1
1,493,391	-		HGI48_RS07040	0.59	-1.1
1,493,400	+		HGI48_RS07040	0.60	+0.5
1,493,401	-				+1.1
1,493,447	+		HGI48_RS07040	0.67	-0.5
1,493,447	+		HGI48_RS07040	0.67	-0.6
1,493,447	+		HGI48_RS07040	0.67	-0.2
1,493,448	-		HGI48_RS07040	0.67	-2.1
1,493,448	-		HGI48_RS07040	0.67	+0.1
1,493,449	+		HGI48_RS07040	0.67	-2.9
1,493,450	-		HGI48_RS07040	0.67	+1.4
1,493,473	+		HGI48_RS07040	0.71	+1.1
1,493,473	+		HGI48_RS07040	0.71	-2.3
1,493,513	+		HGI48_RS07040	0.77	-1.0
1,493,514	-		HGI48_RS07040	0.77	+0.8
1,493,514	-				-1.1
1,493,514	-		HGI48_RS07040	0.77	-2.1
1,493,514	-		HGI48_RS07040	0.77	+0.1
1,493,546	-		HGI48_RS07040	0.81	-1.3
1,493,588	-		HGI48_RS07040	0.87	-1.4
1,493,603	-				+0.5
1,493,605	+		HGI48_RS07040	0.90	+1.2
1,493,605	+		HGI48_RS07040	0.90	+1.2
1,493,606	-				+0.1
1,493,695	+				-1.2
1,493,696	-				+0.5
1,493,696	-				-1.1
1,493,712	-				-1.7
1,493,729	+				+0.4
1,493,730	-				-0.3
1,493,734	+				+0.0
1,493,738	+				-1.2
1,493,739	-				+0.5
1,493,807	+				-1.5
1,493,808	-				-0.3
1,493,925	+				+0.5
1,493,925	+				+0.7
1,493,925	+				-0.5
1,493,925	+				+1.1
1,493,925	+				+1.0
1,493,926	-				+0.9
1,493,926	-				-2.1
1,493,926	-				-0.5
1,494,004	-		HGI48_RS07045	0.34	+1.4
1,494,004	-				+1.1
1,494,005	+		HGI48_RS07045	0.34	+0.3
1,494,005	+		HGI48_RS07045	0.34	-1.1
1,494,005	+		HGI48_RS07045	0.34	-1.4
1,494,005	+		HGI48_RS07045	0.34	-0.7
1,494,006	-		HGI48_RS07045	0.34	-0.8
1,494,006	-		HGI48_RS07045	0.34	+0.4
1,494,006	-		HGI48_RS07045	0.34	+0.2
1,494,006	-		HGI48_RS07045	0.34	-2.3
1,494,006	-		HGI48_RS07045	0.34	+0.7
1,494,010	+		HGI48_RS07045	0.36	-0.2
1,494,010	+		HGI48_RS07045	0.36	-2.3
1,494,010	+		HGI48_RS07045	0.36	+0.3
1,494,011	-		HGI48_RS07045	0.36	+0.3
1,494,011	-		HGI48_RS07045	0.36	+1.9
1,494,011	-		HGI48_RS07045	0.36	+1.0
1,494,011	-		HGI48_RS07045	0.36	+0.6
1,494,011	-		HGI48_RS07045	0.36	-0.7
1,494,011	-		HGI48_RS07045	0.36	-1.1
1,494,011	-		HGI48_RS07045	0.36	-0.2
1,494,112	-		HGI48_RS07045	0.73	+1.9
1,494,213	-				-2.1
1,494,298	+				-0.4
1,494,299	-				+0.5
1,494,311	-				+0.4
1,494,494	-		HGI48_RS07050	0.16	-3.3
1,494,528	+		HGI48_RS07050	0.19	+0.5
1,494,528	+		HGI48_RS07050	0.19	-2.1
1,494,528	+		HGI48_RS07050	0.19	-0.8
1,494,532	+		HGI48_RS07050	0.19	+1.5
1,494,532	+		HGI48_RS07050	0.19	-2.3
1,494,532	+		HGI48_RS07050	0.19	+0.4
1,494,532	+		HGI48_RS07050	0.19	+1.6
1,494,595	-		HGI48_RS07050	0.24	-0.2
1,494,595	-		HGI48_RS07050	0.24	+0.7
1,494,595	-		HGI48_RS07050	0.24	-0.9
1,494,599	-		HGI48_RS07050	0.25	-2.1
1,494,640	+		HGI48_RS07050	0.28	+0.7
1,494,663	+				-0.5