Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05400

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,131,917	-		HGI48_RS05390	0.58	+0.6
1,131,917	-				+0.6
1,132,070	-				-1.0
1,132,070	-				+0.8
1,132,072	+				-0.7
1,132,072	+				-0.4
1,132,073	-				-0.8
1,132,073	-				-0.4
1,132,199	+				+0.8
1,132,199	+				+0.7
1,132,200	-				-0.3
1,132,200	-				-0.6
1,132,200	-				+0.8
1,132,201	+				+1.1
1,132,201	+				+1.0
1,132,201	+				+1.2
1,132,201	+				-0.0
1,132,201	+				+1.3
1,132,201	+				-1.2
1,132,201	+				+0.4
1,132,201	+				+1.5
1,132,202	-				-1.0
1,132,202	-				+0.3
1,132,202	-				+0.8
1,132,237	+				+0.1
1,132,261	+		HGI48_RS05395	0.12	-0.4
1,132,261	+		HGI48_RS05395	0.12	+0.6
1,132,261	+		HGI48_RS05395	0.12	+0.6
1,132,261	+		HGI48_RS05395	0.12	+0.2
1,132,262	-		HGI48_RS05395	0.12	-0.7
1,132,262	-		HGI48_RS05395	0.12	+0.8
1,132,351	+		HGI48_RS05395	0.24	+0.2
1,132,352	-				+0.6
1,132,352	-				-0.0
1,132,405	+		HGI48_RS05395	0.32	+0.6
1,132,470	+		HGI48_RS05395	0.40	-0.4
1,132,470	+		HGI48_RS05395	0.40	+0.6
1,132,470	+		HGI48_RS05395	0.40	+0.3
1,132,471	-		HGI48_RS05395	0.41	-1.8
1,132,471	-		HGI48_RS05395	0.41	-2.4
1,132,528	+		HGI48_RS05395	0.48	-0.2
1,132,635	+		HGI48_RS05395	0.63	-1.8
1,132,635	+		HGI48_RS05395	0.63	-1.0
1,132,635	+		HGI48_RS05395	0.63	-0.8
1,132,635	+		HGI48_RS05395	0.63	-1.8
1,132,636	-		HGI48_RS05395	0.63	-0.6
1,132,636	-				-0.0
1,132,636	-		HGI48_RS05395	0.63	-2.9
1,132,636	-		HGI48_RS05395	0.63	+1.0
1,132,636	-		HGI48_RS05395	0.63	+0.2
1,132,666	+		HGI48_RS05395	0.67	+1.0
1,132,678	-		HGI48_RS05395	0.69	-0.4
1,132,778	-		HGI48_RS05395	0.83	+1.1
1,132,778	-		HGI48_RS05395	0.83	+0.2
1,132,793	+		HGI48_RS05395	0.85	-0.6
1,132,793	+		HGI48_RS05395	0.85	-0.4
1,132,794	-		HGI48_RS05395	0.85	-0.4
1,132,870	+				-2.2
1,132,891	+				+0.0
1,132,891	+				-0.8
1,132,891	+				+0.4
1,132,892	-				-0.5
1,132,892	-				+0.3
1,132,892	-				+0.1
1,132,892	-				-1.5
1,132,895	+				-0.3
1,132,895	+				-0.1
1,132,896	-				-1.0
1,132,896	-				+0.2
1,132,896	-				+0.2
1,132,896	-				+0.1
1,132,896	-				-0.4
1,132,896	-				-1.4
1,132,908	-				-0.2
1,132,997	+		HGI48_RS05400	0.22	+0.6
1,132,997	+		HGI48_RS05400	0.22	+0.3
1,132,997	+		HGI48_RS05400	0.22	-0.7
1,133,050	-				+0.6
1,133,050	-		HGI48_RS05400	0.34	+0.3
1,133,050	-		HGI48_RS05400	0.34	+1.6
1,133,094	-		HGI48_RS05400	0.45	+0.3
1,133,162	+		HGI48_RS05400	0.61	-1.3
1,133,192	+		HGI48_RS05400	0.68	+0.7
1,133,245	+		HGI48_RS05400	0.81	-0.8
1,133,245	+		HGI48_RS05400	0.81	-0.3
1,133,245	+		HGI48_RS05400	0.81	-0.4
1,133,245	+		HGI48_RS05400	0.81	-0.8
1,133,246	-		HGI48_RS05400	0.81	-0.4
1,133,246	-		HGI48_RS05400	0.81	+0.0
1,133,246	-		HGI48_RS05400	0.81	+2.2
1,133,246	-				-0.0
1,133,246	-		HGI48_RS05400	0.81	+0.6
1,133,246	-		HGI48_RS05400	0.81	-0.3
1,133,246	-				+2.9
1,133,246	-		HGI48_RS05400	0.81	+0.0
1,133,246	-		HGI48_RS05400	0.81	+0.3
1,133,292	+				-0.4
1,133,311	+				+1.0
1,133,312	-				-0.2
1,133,312	-				+0.6
1,133,312	-				+0.2
1,133,312	-				-0.3
1,133,314	+				+0.3
1,133,314	+				+0.8
1,133,314	+				-0.7
1,133,314	+				+1.3
1,133,315	-				-1.8
1,133,315	-				+0.3
1,133,315	-				+0.2
1,133,315	-				-0.5
1,133,315	-				-0.0
1,133,315	-				-0.5
1,133,329	+				-0.2
1,133,329	+				+0.7
1,133,329	+				+0.6
1,133,483	+		HGI48_RS05405	0.28	-2.4
1,133,485	+		HGI48_RS05405	0.28	+0.1
1,133,486	-		HGI48_RS05405	0.29	-0.3
1,133,486	-		HGI48_RS05405	0.29	-0.4
1,133,516	+		HGI48_RS05405	0.34	-2.2
1,133,516	+		HGI48_RS05405	0.34	+1.2
1,133,516	+		HGI48_RS05405	0.34	-0.0
1,133,517	-		HGI48_RS05405	0.34	-0.3
1,133,675	-		HGI48_RS05405	0.63	-0.8
1,133,675	-		HGI48_RS05405	0.63	+0.2
1,133,675	-		HGI48_RS05405	0.63	+0.6
1,133,806	+		HGI48_RS05405	0.87	-0.8
1,133,815	+		HGI48_RS05405	0.88	-1.4
1,133,815	+		HGI48_RS05405	0.88	+1.7
1,133,816	-		HGI48_RS05405	0.88	+0.5
1,133,816	-		HGI48_RS05405	0.88	-0.0
1,133,852	+				-0.1
1,133,853	-				-0.4
1,133,863	+				-0.4
1,133,864	-				+0.6
1,133,864	-				+1.0
1,133,864	-				+2.0
1,133,864	-				+0.2
1,133,901	+				-0.2
1,133,933	+				+0.3
1,133,933	+				+0.6
1,133,982	+				-0.9
1,133,982	+				-0.2
1,133,982	+				+0.3
1,133,983	-				-2.2
1,133,983	-				-0.4
1,133,983	-				-2.0
1,133,983	-				+0.6
1,133,983	-				-0.2
1,133,983	-				-0.0
1,133,983	-				-0.4
1,133,985	+				+1.1
1,133,985	+				+0.4
1,133,985	+				-2.0
1,133,985	+				+0.6
1,133,986	-				+1.7
1,134,160	+		HGI48_RS05410	0.20	-0.4
1,134,160	+		HGI48_RS05410	0.20	-2.6
1,134,160	+				+0.6
1,134,161	-		HGI48_RS05410	0.21	-0.7
1,134,166	+		HGI48_RS05410	0.21	-1.4
1,134,166	+		HGI48_RS05410	0.21	-1.4
1,134,166	+				+1.6
1,134,167	-		HGI48_RS05410	0.21	-1.4
1,134,167	-		HGI48_RS05410	0.21	-1.7
1,134,167	-		HGI48_RS05410	0.21	-1.2
1,134,174	-		HGI48_RS05410	0.22	-0.7
1,134,179	+		HGI48_RS05410	0.22	-0.1
1,134,180	-		HGI48_RS05410	0.22	-1.8
1,134,181	+		HGI48_RS05410	0.22	+1.7
1,134,182	-				+0.6
1,134,291	-		HGI48_RS05410	0.31	+0.3
1,134,298	+		HGI48_RS05410	0.32	+0.8
1,134,298	+		HGI48_RS05410	0.32	-1.4
1,134,299	-		HGI48_RS05410	0.32	-0.3