Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02490 and HGI48_RS02495 are separated by 138 nucleotides HGI48_RS02495 and HGI48_RS02500 are separated by 17 nucleotides
HGI48_RS02490: HGI48_RS02490 - LysR family transcriptional regulator, at 537,600 to 538,538
_RS02490
HGI48_RS02495: HGI48_RS02495 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 538,677 to 539,711
_RS02495
HGI48_RS02500: HGI48_RS02500 - oxidoreductase, at 539,729 to 540,751
_RS02500
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.678 kb on + strand at 537.678 kb on + strand at 537.794 kb on + strand, within HGI48_RS02490 at 537.794 kb on + strand, within HGI48_RS02490 at 537.796 kb on + strand, within HGI48_RS02490 at 537.900 kb on - strand, within HGI48_RS02490 at 537.910 kb on + strand, within HGI48_RS02490 at 537.911 kb on - strand, within HGI48_RS02490 at 537.911 kb on - strand, within HGI48_RS02490 at 537.911 kb on - strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.139 kb on + strand, within HGI48_RS02490 at 538.140 kb on - strand, within HGI48_RS02490 at 538.158 kb on - strand, within HGI48_RS02490 at 538.213 kb on - strand, within HGI48_RS02490 at 538.309 kb on + strand, within HGI48_RS02490 at 538.309 kb on + strand, within HGI48_RS02490 at 538.309 kb on + strand, within HGI48_RS02490 at 538.310 kb on - strand, within HGI48_RS02490 at 538.340 kb on - strand, within HGI48_RS02490 at 538.340 kb on - strand at 538.552 kb on - strand at 538.587 kb on - strand at 538.587 kb on - strand at 538.617 kb on + strand at 538.617 kb on + strand at 538.618 kb on - strand at 538.618 kb on - strand at 538.618 kb on - strand at 538.643 kb on + strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.646 kb on - strand at 538.862 kb on + strand, within HGI48_RS02495 at 538.862 kb on + strand, within HGI48_RS02495 at 538.863 kb on - strand, within HGI48_RS02495 at 538.863 kb on - strand, within HGI48_RS02495 at 539.040 kb on + strand, within HGI48_RS02495 at 539.198 kb on - strand, within HGI48_RS02495 at 539.226 kb on - strand, within HGI48_RS02495 at 539.301 kb on + strand, within HGI48_RS02495 at 539.301 kb on + strand, within HGI48_RS02495 at 539.302 kb on - strand, within HGI48_RS02495 at 539.302 kb on - strand, within HGI48_RS02495 at 539.396 kb on + strand, within HGI48_RS02495 at 539.688 kb on + strand at 539.770 kb on + strand at 539.770 kb on + strand at 539.838 kb on + strand, within HGI48_RS02500 at 539.838 kb on + strand, within HGI48_RS02500 at 539.839 kb on - strand, within HGI48_RS02500 at 539.839 kb on - strand, within HGI48_RS02500 at 539.913 kb on + strand, within HGI48_RS02500 at 539.972 kb on + strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand at 540.021 kb on - strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand at 540.024 kb on + strand at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.025 kb on - strand at 540.025 kb on - strand, within HGI48_RS02500 at 540.059 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.518 kb on - strand, within HGI48_RS02500 at 540.637 kb on + strand at 540.638 kb on - strand, within HGI48_RS02500 at 540.638 kb on - strand, within HGI48_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 537,678 + -1.3 537,678 + -1.0 537,794 + HGI48_RS02490 0.21 -0.9 537,794 + HGI48_RS02490 0.21 -1.7 537,796 + HGI48_RS02490 0.21 -1.2 537,900 - HGI48_RS02490 0.32 -0.9 537,910 + HGI48_RS02490 0.33 +0.8 537,911 - HGI48_RS02490 0.33 +0.1 537,911 - HGI48_RS02490 0.33 -0.4 537,911 - HGI48_RS02490 0.33 -0.3 538,139 + HGI48_RS02490 0.57 -0.7 538,139 + HGI48_RS02490 0.57 +0.7 538,139 + HGI48_RS02490 0.57 -0.9 538,139 + HGI48_RS02490 0.57 -1.8 538,139 + HGI48_RS02490 0.57 +0.2 538,139 + HGI48_RS02490 0.57 +0.3 538,139 + HGI48_RS02490 0.57 +0.7 538,140 - HGI48_RS02490 0.58 -0.0 538,158 - HGI48_RS02490 0.59 -0.3 538,213 - HGI48_RS02490 0.65 -1.9 538,309 + HGI48_RS02490 0.76 -0.9 538,309 + HGI48_RS02490 0.76 -1.3 538,309 + HGI48_RS02490 0.76 -0.5 538,310 - HGI48_RS02490 0.76 +0.5 538,340 - HGI48_RS02490 0.79 -0.3 538,340 - +0.1 538,552 - -0.7 538,587 - +0.2 538,587 - +1.7 538,617 + -0.0 538,617 + -0.3 538,618 - -0.2 538,618 - -2.7 538,618 - -0.9 538,643 + +1.0 538,646 - +0.4 538,646 - +0.7 538,646 - -2.9 538,646 - -0.6 538,646 - +0.5 538,862 + HGI48_RS02495 0.18 +1.0 538,862 + HGI48_RS02495 0.18 -1.9 538,863 - HGI48_RS02495 0.18 -0.3 538,863 - HGI48_RS02495 0.18 +0.1 539,040 + HGI48_RS02495 0.35 +0.4 539,198 - HGI48_RS02495 0.50 -0.5 539,226 - HGI48_RS02495 0.53 +0.4 539,301 + HGI48_RS02495 0.60 +1.2 539,301 + HGI48_RS02495 0.60 -0.4 539,302 - HGI48_RS02495 0.60 +1.7 539,302 - HGI48_RS02495 0.60 +1.5 539,396 + HGI48_RS02495 0.69 +0.7 539,688 + -0.9 539,770 + +0.1 539,770 + +0.1 539,838 + HGI48_RS02500 0.11 -1.1 539,838 + HGI48_RS02500 0.11 -1.1 539,839 - HGI48_RS02500 0.11 -1.5 539,839 - HGI48_RS02500 0.11 -1.3 539,913 + HGI48_RS02500 0.18 +0.2 539,972 + HGI48_RS02500 0.24 -1.7 539,973 - HGI48_RS02500 0.24 +0.1 539,973 - HGI48_RS02500 0.24 +1.3 539,973 - -0.9 540,021 - HGI48_RS02500 0.29 +2.1 540,024 + HGI48_RS02500 0.29 -1.7 540,024 + +0.7 540,024 + +1.4 540,024 + HGI48_RS02500 0.29 +0.7 540,024 + HGI48_RS02500 0.29 +0.3 540,025 - +0.7 540,025 - HGI48_RS02500 0.29 -0.3 540,059 - HGI48_RS02500 0.32 +1.0 540,083 - HGI48_RS02500 0.35 +0.5 540,083 - HGI48_RS02500 0.35 +0.3 540,194 + HGI48_RS02500 0.45 +1.2 540,194 + HGI48_RS02500 0.45 +0.3 540,194 + HGI48_RS02500 0.45 -1.2 540,194 + HGI48_RS02500 0.45 -2.7 540,195 - HGI48_RS02500 0.46 -0.9 540,195 - HGI48_RS02500 0.46 +0.1 540,350 + HGI48_RS02500 0.61 -0.3 540,350 + HGI48_RS02500 0.61 +0.8 540,351 - HGI48_RS02500 0.61 -2.5 540,351 - HGI48_RS02500 0.61 +0.2 540,351 - HGI48_RS02500 0.61 -2.1 540,351 - HGI48_RS02500 0.61 -0.7 540,518 - HGI48_RS02500 0.77 -2.8 540,637 + -0.9 540,638 - HGI48_RS02500 0.89 -0.7 540,638 - HGI48_RS02500 0.89 -1.9
Or see this region's nucleotide sequence