Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01345 and HGI48_RS01350 are separated by 314 nucleotides HGI48_RS01350 and HGI48_RS01355 are separated by 103 nucleotides
HGI48_RS01345: HGI48_RS01345 - RNase E specificity factor CsrD, at 297,992 to 299,938
_RS01345
HGI48_RS01350: HGI48_RS01350 - rod shape-determining protein MreB, at 300,253 to 301,296
_RS01350
HGI48_RS01355: HGI48_RS01355 - rod shape-determining protein MreC, at 301,400 to 302,512
_RS01355
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 299.304 kb on - strand, within HGI48_RS01345 at 299.336 kb on + strand, within HGI48_RS01345 at 299.336 kb on + strand, within HGI48_RS01345 at 299.336 kb on + strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.337 kb on - strand, within HGI48_RS01345 at 299.375 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.570 kb on + strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.571 kb on - strand, within HGI48_RS01345 at 299.573 kb on - strand, within HGI48_RS01345 at 299.573 kb on - strand at 299.592 kb on + strand, within HGI48_RS01345 at 299.593 kb on - strand at 299.593 kb on - strand, within HGI48_RS01345 at 299.593 kb on - strand, within HGI48_RS01345 at 299.666 kb on + strand at 299.667 kb on - strand, within HGI48_RS01345 at 299.668 kb on + strand, within HGI48_RS01345 at 299.669 kb on - strand, within HGI48_RS01345 at 299.669 kb on - strand, within HGI48_RS01345 at 299.669 kb on - strand, within HGI48_RS01345 at 299.811 kb on + strand at 299.812 kb on - strand at 299.812 kb on - strand at 299.812 kb on - strand at 299.815 kb on + strand at 299.816 kb on - strand at 299.930 kb on + strand at 299.930 kb on + strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.931 kb on - strand at 299.959 kb on - strand at 299.959 kb on - strand at 299.959 kb on - strand at 299.963 kb on + strand at 299.964 kb on - strand at 299.964 kb on - strand at 299.964 kb on - strand at 299.964 kb on - strand at 299.964 kb on - strand at 300.034 kb on + strand at 300.034 kb on + strand at 300.035 kb on - strand at 300.035 kb on - strand at 300.035 kb on - strand at 300.157 kb on + strand at 300.200 kb on + strand at 300.200 kb on + strand at 300.200 kb on + strand at 300.205 kb on + strand at 301.295 kb on - strand at 301.347 kb on + strand at 301.347 kb on + strand at 301.347 kb on + strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.376 kb on + strand at 301.377 kb on - strand at 301.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 299,304 - HGI48_RS01345 0.67 -0.5 299,336 + HGI48_RS01345 0.69 +0.2 299,336 + HGI48_RS01345 0.69 +0.3 299,336 + HGI48_RS01345 0.69 -2.3 299,337 - HGI48_RS01345 0.69 -0.3 299,337 - HGI48_RS01345 0.69 -0.3 299,337 - HGI48_RS01345 0.69 -0.8 299,337 - HGI48_RS01345 0.69 -1.3 299,337 - HGI48_RS01345 0.69 +0.1 299,337 - -0.8 299,337 - HGI48_RS01345 0.69 -1.8 299,337 - HGI48_RS01345 0.69 +1.2 299,337 - HGI48_RS01345 0.69 -0.7 299,375 + HGI48_RS01345 0.71 -0.1 299,570 + HGI48_RS01345 0.81 +0.0 299,570 + HGI48_RS01345 0.81 -0.6 299,570 + HGI48_RS01345 0.81 -0.3 299,570 + HGI48_RS01345 0.81 +0.3 299,570 + HGI48_RS01345 0.81 -0.3 299,570 + HGI48_RS01345 0.81 -1.3 299,571 - HGI48_RS01345 0.81 -1.6 299,571 - -0.8 299,571 - HGI48_RS01345 0.81 -2.1 299,571 - HGI48_RS01345 0.81 -1.7 299,571 - HGI48_RS01345 0.81 -1.2 299,571 - -0.8 299,571 - HGI48_RS01345 0.81 -2.1 299,571 - HGI48_RS01345 0.81 -1.3 299,571 - HGI48_RS01345 0.81 -2.8 299,571 - HGI48_RS01345 0.81 -0.5 299,573 - HGI48_RS01345 0.81 -0.3 299,573 - +0.7 299,592 + HGI48_RS01345 0.82 -0.7 299,593 - -0.3 299,593 - HGI48_RS01345 0.82 -0.6 299,593 - HGI48_RS01345 0.82 -0.8 299,666 + +1.2 299,667 - HGI48_RS01345 0.86 -1.8 299,668 + HGI48_RS01345 0.86 +1.4 299,669 - HGI48_RS01345 0.86 -0.8 299,669 - HGI48_RS01345 0.86 -1.1 299,669 - HGI48_RS01345 0.86 -1.1 299,811 + -1.1 299,812 - -0.8 299,812 - -0.4 299,812 - +0.3 299,815 + +0.4 299,816 - +0.7 299,930 + -0.1 299,930 + -0.6 299,931 - -0.3 299,931 - +0.3 299,931 - +0.7 299,931 - -0.3 299,931 - -0.8 299,931 - -0.8 299,931 - +0.5 299,931 - +1.0 299,959 - -2.4 299,959 - +0.9 299,959 - +1.7 299,963 + +1.4 299,964 - +0.5 299,964 - -0.6 299,964 - +1.3 299,964 - -0.0 299,964 - -0.9 300,034 + -1.6 300,034 + -0.5 300,035 - -1.6 300,035 - -0.5 300,035 - -2.6 300,157 + -2.3 300,200 + -1.6 300,200 + +1.0 300,200 + +0.1 300,205 + -0.2 301,295 - -1.8 301,347 + +0.9 301,347 + +0.2 301,347 + +0.4 301,348 - -0.6 301,348 - -0.4 301,348 - -2.4 301,348 - -2.1 301,348 - -2.8 301,348 - -1.3 301,376 + +2.5 301,377 - +1.7 301,389 + -2.1
Or see this region's nucleotide sequence