Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01145

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01140 and HGI48_RS01145 are separated by 37 nucleotidesHGI48_RS01145 and HGI48_RS01150 overlap by 1 nucleotidesHGI48_RS01150 and HGI48_RS01155 are separated by 1 nucleotidesHGI48_RS01155 and HGI48_RS01160 overlap by 4 nucleotides HGI48_RS01140: HGI48_RS01140 - heavy metal sensor histidine kinase, at 256,699 to 258,132 _RS01140 HGI48_RS01145: HGI48_RS01145 - 2-iminoacetate synthase ThiH, at 258,170 to 259,315 _RS01145 HGI48_RS01150: HGI48_RS01150 - thiazole synthase, at 259,315 to 260,094 _RS01150 HGI48_RS01155: HGI48_RS01155 - sulfur carrier protein ThiS, at 260,096 to 260,296 _RS01155 HGI48_RS01160: HGI48_RS01160 - HesA/MoeB/ThiF family protein, at 260,293 to 261,045 _RS01160 Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 257.209 kb on + strand, within HGI48_RS01140at 257.209 kb on + strandat 257.209 kb on + strand, within HGI48_RS01140at 257.209 kb on + strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.210 kb on - strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.249 kb on + strand, within HGI48_RS01140at 257.301 kb on - strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.307 kb on + strand, within HGI48_RS01140at 257.407 kb on - strand, within HGI48_RS01140at 257.437 kb on + strand, within HGI48_RS01140at 257.527 kb on + strand, within HGI48_RS01140at 257.527 kb on + strand, within HGI48_RS01140at 257.551 kb on + strand, within HGI48_RS01140at 257.551 kb on + strand, within HGI48_RS01140at 257.552 kb on - strand, within HGI48_RS01140at 257.552 kb on - strand, within HGI48_RS01140at 257.562 kb on - strand, within HGI48_RS01140at 257.574 kb on + strand, within HGI48_RS01140at 257.575 kb on - strand, within HGI48_RS01140at 257.575 kb on - strandat 257.704 kb on + strand, within HGI48_RS01140at 257.704 kb on + strand, within HGI48_RS01140at 257.704 kb on + strand, within HGI48_RS01140at 257.705 kb on - strand, within HGI48_RS01140at 257.705 kb on - strand, within HGI48_RS01140at 257.705 kb on - strand, within HGI48_RS01140at 257.712 kb on + strand, within HGI48_RS01140at 257.712 kb on + strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.713 kb on - strand, within HGI48_RS01140at 257.780 kb on + strand, within HGI48_RS01140at 257.781 kb on - strand, within HGI48_RS01140at 257.781 kb on - strand, within HGI48_RS01140at 257.802 kb on + strand, within HGI48_RS01140at 257.802 kb on + strand, within HGI48_RS01140at 257.827 kb on + strand, within HGI48_RS01140at 257.849 kb on + strand, within HGI48_RS01140at 257.888 kb on + strand, within HGI48_RS01140at 257.982 kb on + strandat 257.982 kb on + strand, within HGI48_RS01140at 258.009 kb on + strandat 258.010 kb on - strandat 258.096 kb on + strandat 258.097 kb on - strandat 258.130 kb on + strandat 258.130 kb on + strandat 258.131 kb on - strandat 258.131 kb on - strandat 258.131 kb on - strandat 258.550 kb on - strandat 258.564 kb on + strand, within HGI48_RS01145at 258.565 kb on - strand, within HGI48_RS01145at 258.565 kb on - strand, within HGI48_RS01145at 258.565 kb on - strandat 258.565 kb on - strand, within HGI48_RS01145at 258.586 kb on + strandat 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.586 kb on + strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.587 kb on - strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.588 kb on + strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.589 kb on - strand, within HGI48_RS01145at 258.729 kb on + strand, within HGI48_RS01145at 258.729 kb on + strand, within HGI48_RS01145at 258.730 kb on - strand, within HGI48_RS01145at 258.744 kb on + strand, within HGI48_RS01145at 258.744 kb on + strand, within HGI48_RS01145at 258.756 kb on + strand, within HGI48_RS01145at 258.756 kb on + strand, within HGI48_RS01145at 258.798 kb on + strand, within HGI48_RS01145at 258.799 kb on - strand, within HGI48_RS01145at 258.799 kb on - strand, within HGI48_RS01145at 258.879 kb on + strand, within HGI48_RS01145at 258.895 kb on + strand, within HGI48_RS01145at 258.895 kb on + strand, within HGI48_RS01145at 258.895 kb on + strandat 258.949 kb on + strandat 258.949 kb on + strand, within HGI48_RS01145at 258.949 kb on + strand, within HGI48_RS01145at 258.949 kb on + strand, within HGI48_RS01145at 258.950 kb on - strand, within HGI48_RS01145at 258.950 kb on - strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.026 kb on + strand, within HGI48_RS01145at 259.027 kb on - strand, within HGI48_RS01145at 259.060 kb on - strand, within HGI48_RS01145at 259.060 kb on - strand, within HGI48_RS01145at 259.071 kb on + strand, within HGI48_RS01145at 259.072 kb on - strand, within HGI48_RS01145at 259.072 kb on - strandat 259.072 kb on - strand, within HGI48_RS01145at 259.072 kb on - strand, within HGI48_RS01145at 259.084 kb on + strand, within HGI48_RS01145at 259.174 kb on + strandat 259.174 kb on + strand, within HGI48_RS01145at 259.174 kb on + strand, within HGI48_RS01145at 259.203 kb on - strandat 259.214 kb on + strandat 259.214 kb on + strandat 259.215 kb on - strandat 259.215 kb on - strandat 259.215 kb on - strandat 259.215 kb on - strandat 259.784 kb on + strandat 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strandat 259.784 kb on + strand, within HGI48_RS01150at 259.784 kb on + strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 259.785 kb on - strand, within HGI48_RS01150at 260.067 kb on + strandat 260.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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257,209 + HGI48_RS01140 0.36 -0.6
257,209 + +2.2
257,209 + HGI48_RS01140 0.36 -0.3
257,209 + HGI48_RS01140 0.36 +0.9
257,210 - HGI48_RS01140 0.36 +1.6
257,210 - HGI48_RS01140 0.36 -1.8
257,210 - HGI48_RS01140 0.36 -0.6
257,249 + HGI48_RS01140 0.38 -1.3
257,249 + HGI48_RS01140 0.38 -0.8
257,249 + HGI48_RS01140 0.38 +0.2
257,249 + HGI48_RS01140 0.38 -0.9
257,301 - HGI48_RS01140 0.42 +0.1
257,307 + HGI48_RS01140 0.42 +0.7
257,307 + HGI48_RS01140 0.42 +0.8
257,307 + HGI48_RS01140 0.42 -0.6
257,407 - HGI48_RS01140 0.49 -1.3
257,437 + HGI48_RS01140 0.51 -0.8
257,527 + HGI48_RS01140 0.58 -2.8
257,527 + HGI48_RS01140 0.58 -0.4
257,551 + HGI48_RS01140 0.59 -3.2
257,551 + HGI48_RS01140 0.59 +1.2
257,552 - HGI48_RS01140 0.59 +0.7
257,552 - HGI48_RS01140 0.59 +2.4
257,562 - HGI48_RS01140 0.60 -0.5
257,574 + HGI48_RS01140 0.61 +0.9
257,575 - HGI48_RS01140 0.61 -1.8
257,575 - +0.7
257,704 + HGI48_RS01140 0.70 +0.3
257,704 + HGI48_RS01140 0.70 +0.5
257,704 + HGI48_RS01140 0.70 -0.2
257,705 - HGI48_RS01140 0.70 -0.6
257,705 - HGI48_RS01140 0.70 -0.4
257,705 - HGI48_RS01140 0.70 -2.3
257,712 + HGI48_RS01140 0.71 -1.3
257,712 + HGI48_RS01140 0.71 +1.2
257,713 - HGI48_RS01140 0.71 -1.3
257,713 - HGI48_RS01140 0.71 +0.2
257,713 - HGI48_RS01140 0.71 -0.7
257,713 - HGI48_RS01140 0.71 -1.1
257,780 + HGI48_RS01140 0.75 -0.3
257,781 - HGI48_RS01140 0.75 +0.7
257,781 - HGI48_RS01140 0.75 -0.0
257,802 + HGI48_RS01140 0.77 -1.3
257,802 + HGI48_RS01140 0.77 -2.1
257,827 + HGI48_RS01140 0.79 +1.0
257,849 + HGI48_RS01140 0.80 -1.8
257,888 + HGI48_RS01140 0.83 -0.2
257,982 + -0.8
257,982 + HGI48_RS01140 0.89 -0.5
258,009 + +0.3
258,010 - +1.6
258,096 + +0.2
258,097 - -1.0
258,130 + +0.3
258,130 + -1.8
258,131 - -0.1
258,131 - -1.8
258,131 - -2.3
258,550 - -0.8
258,564 + HGI48_RS01145 0.34 +0.2
258,565 - HGI48_RS01145 0.34 -2.1
258,565 - HGI48_RS01145 0.34 -1.3
258,565 - -0.8
258,565 - HGI48_RS01145 0.34 -0.3
258,586 + -0.8
258,586 + HGI48_RS01145 0.36 +1.2
258,586 + HGI48_RS01145 0.36 -0.3
258,586 + HGI48_RS01145 0.36 +0.2
258,586 + HGI48_RS01145 0.36 -0.5
258,587 - HGI48_RS01145 0.36 -1.6
258,587 - HGI48_RS01145 0.36 +0.5
258,587 - HGI48_RS01145 0.36 -2.1
258,588 + HGI48_RS01145 0.36 -0.1
258,588 + HGI48_RS01145 0.36 +0.5
258,588 + HGI48_RS01145 0.36 +0.7
258,588 + HGI48_RS01145 0.36 +0.2
258,588 + HGI48_RS01145 0.36 +0.5
258,589 - HGI48_RS01145 0.37 -1.3
258,589 - HGI48_RS01145 0.37 -1.6
258,589 - HGI48_RS01145 0.37 +1.2
258,589 - HGI48_RS01145 0.37 -0.6
258,589 - HGI48_RS01145 0.37 +1.3
258,589 - HGI48_RS01145 0.37 +0.2
258,589 - HGI48_RS01145 0.37 -1.6
258,589 - HGI48_RS01145 0.37 -1.6
258,589 - HGI48_RS01145 0.37 +0.1
258,589 - HGI48_RS01145 0.37 -0.3
258,729 + HGI48_RS01145 0.49 -2.1
258,729 + HGI48_RS01145 0.49 +0.2
258,730 - HGI48_RS01145 0.49 -1.6
258,744 + HGI48_RS01145 0.50 -0.3
258,744 + HGI48_RS01145 0.50 -1.8
258,756 + HGI48_RS01145 0.51 +0.7
258,756 + HGI48_RS01145 0.51 -1.3
258,798 + HGI48_RS01145 0.55 -0.8
258,799 - HGI48_RS01145 0.55 +1.7
258,799 - HGI48_RS01145 0.55 -0.0
258,879 + HGI48_RS01145 0.62 -0.2
258,895 + HGI48_RS01145 0.63 -1.7
258,895 + HGI48_RS01145 0.63 +0.3
258,895 + -0.3
258,949 + +0.7
258,949 + HGI48_RS01145 0.68 +1.2
258,949 + HGI48_RS01145 0.68 +0.2
258,949 + HGI48_RS01145 0.68 -0.1
258,950 - HGI48_RS01145 0.68 -0.3
258,950 - HGI48_RS01145 0.68 +0.6
259,026 + HGI48_RS01145 0.75 -0.5
259,026 + HGI48_RS01145 0.75 -0.1
259,026 + HGI48_RS01145 0.75 +0.7
259,027 - HGI48_RS01145 0.75 +1.7
259,060 - HGI48_RS01145 0.78 -0.5
259,060 - HGI48_RS01145 0.78 -0.1
259,071 + HGI48_RS01145 0.79 -0.3
259,072 - HGI48_RS01145 0.79 +0.5
259,072 - +2.6
259,072 - HGI48_RS01145 0.79 +0.2
259,072 - HGI48_RS01145 0.79 -0.0
259,084 + HGI48_RS01145 0.80 -0.7
259,174 + -0.8
259,174 + HGI48_RS01145 0.88 +0.3
259,174 + HGI48_RS01145 0.88 +0.2
259,203 - +0.2
259,214 + +0.2
259,214 + +0.7
259,215 - -0.3
259,215 - +1.2
259,215 - -2.6
259,215 - +2.0
259,784 + +0.7
259,784 + HGI48_RS01150 0.60 -1.6
259,784 + HGI48_RS01150 0.60 -3.1
259,784 + HGI48_RS01150 0.60 -1.3
259,784 + HGI48_RS01150 0.60 -1.1
259,784 + HGI48_RS01150 0.60 -0.3
259,784 + +0.2
259,784 + HGI48_RS01150 0.60 +0.5
259,784 + HGI48_RS01150 0.60 -1.3
259,785 - HGI48_RS01150 0.60 -0.1
259,785 - HGI48_RS01150 0.60 -0.1
259,785 - HGI48_RS01150 0.60 -0.3
259,785 - HGI48_RS01150 0.60 +0.5
259,785 - HGI48_RS01150 0.60 -3.3
259,785 - HGI48_RS01150 0.60 +1.2
259,785 - HGI48_RS01150 0.60 -0.0
260,067 + -0.8
260,067 + -1.3

Or see this region's nucleotide sequence