Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01000 and HGI48_RS01005 are separated by 87 nucleotides HGI48_RS01005 and HGI48_RS01010 are separated by 194 nucleotides HGI48_RS01010 and HGI48_RS01015 are separated by 121 nucleotides HGI48_RS01015 and HGI48_RS01020 are separated by 282 nucleotides
HGI48_RS01000: HGI48_RS01000 - 16S ribosomal RNA, at 226,834 to 228,378
_RS01000
HGI48_RS01005: HGI48_RS01005 - tRNA-Glu, at 228,466 to 228,541
_RS01005
HGI48_RS01010: HGI48_RS01010 - 23S ribosomal RNA, at 228,736 to 231,661
_RS01010
HGI48_RS01015: HGI48_RS01015 - 5S ribosomal RNA, at 231,783 to 231,898
_RS01015
HGI48_RS01020: HGI48_RS01020 - UDP-N-acetylmuramate dehydrogenase, at 232,181 to 233,218
_RS01020
Position (kb) 228
229
230
231
232 Strain fitness (log2 ratio) -2
-1
0
1 at 229.384 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 229.602 kb on + strand, within HGI48_RS01010 at 230.007 kb on + strand, within HGI48_RS01010 at 230.007 kb on + strand at 230.007 kb on + strand, within HGI48_RS01010 at 230.007 kb on + strand, within HGI48_RS01010 at 230.011 kb on + strand, within HGI48_RS01010 at 230.011 kb on + strand, within HGI48_RS01010 at 230.011 kb on + strand, within HGI48_RS01010 at 230.704 kb on + strand, within HGI48_RS01010 at 230.935 kb on + strand, within HGI48_RS01010 at 231.606 kb on + strand at 231.606 kb on + strand at 231.661 kb on + strand at 231.661 kb on + strand at 231.661 kb on + strand at 231.661 kb on + strand at 232.065 kb on + strand at 232.126 kb on + strand at 232.127 kb on - strand at 232.144 kb on + strand at 232.144 kb on + strand at 232.144 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.149 kb on + strand at 232.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 229,384 + HGI48_RS01010 0.22 -0.5 229,602 + HGI48_RS01010 0.30 -0.3 229,602 + HGI48_RS01010 0.30 -0.5 229,602 + HGI48_RS01010 0.30 -0.5 229,602 + HGI48_RS01010 0.30 -1.4 230,007 + HGI48_RS01010 0.43 -2.6 230,007 + +1.7 230,007 + HGI48_RS01010 0.43 +1.6 230,007 + HGI48_RS01010 0.43 -0.3 230,011 + HGI48_RS01010 0.44 +1.0 230,011 + HGI48_RS01010 0.44 -0.5 230,011 + HGI48_RS01010 0.44 -1.1 230,704 + HGI48_RS01010 0.67 -1.6 230,935 + HGI48_RS01010 0.75 +0.1 231,606 + +1.0 231,606 + -1.3 231,661 + -0.6 231,661 + +1.6 231,661 + +0.3 231,661 + -0.3 232,065 + -0.7 232,126 + -1.8 232,127 - -1.4 232,144 + +1.7 232,144 + -1.1 232,144 + -0.3 232,149 + -1.1 232,149 + -0.8 232,149 + +0.3 232,149 + -1.0 232,149 + +0.5 232,177 + -2.1
Or see this region's nucleotide sequence