Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00565

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00560 and HGI48_RS00565 overlap by 4 nucleotidesHGI48_RS00565 and HGI48_RS00570 are separated by 0 nucleotidesHGI48_RS00570 and HGI48_RS00575 overlap by 4 nucleotides HGI48_RS00560: HGI48_RS00560 - ABC transporter permease, at 134,313 to 135,323 _RS00560 HGI48_RS00565: HGI48_RS00565 - ABC transporter permease, at 135,320 to 136,222 _RS00565 HGI48_RS00570: HGI48_RS00570 - ABC transporter ATP-binding protein, at 136,223 to 137,053 _RS00570 HGI48_RS00575: HGI48_RS00575 - ABC transporter ATP-binding protein, at 137,050 to 137,790 _RS00575 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 134.320 kb on + strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.321 kb on - strandat 134.321 kb on - strandat 134.339 kb on + strandat 134.598 kb on + strand, within HGI48_RS00560at 134.895 kb on + strand, within HGI48_RS00560at 134.896 kb on - strand, within HGI48_RS00560at 134.952 kb on + strand, within HGI48_RS00560at 134.952 kb on + strand, within HGI48_RS00560at 134.953 kb on - strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strandat 134.968 kb on - strand, within HGI48_RS00560at 134.988 kb on - strand, within HGI48_RS00560at 135.123 kb on + strandat 135.124 kb on - strand, within HGI48_RS00560at 135.189 kb on + strand, within HGI48_RS00560at 135.189 kb on + strand, within HGI48_RS00560at 135.190 kb on - strand, within HGI48_RS00560at 135.197 kb on + strand, within HGI48_RS00560at 135.239 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.262 kb on - strandat 135.262 kb on - strandat 135.294 kb on + strandat 135.295 kb on - strandat 135.317 kb on - strandat 135.317 kb on - strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.609 kb on - strand, within HGI48_RS00565at 135.619 kb on + strand, within HGI48_RS00565at 135.619 kb on + strand, within HGI48_RS00565at 135.620 kb on - strand, within HGI48_RS00565at 135.620 kb on - strand, within HGI48_RS00565at 135.620 kb on - strand, within HGI48_RS00565at 135.622 kb on + strand, within HGI48_RS00565at 135.623 kb on - strand, within HGI48_RS00565at 135.623 kb on - strand, within HGI48_RS00565at 135.623 kb on - strand, within HGI48_RS00565at 135.715 kb on + strandat 135.848 kb on + strand, within HGI48_RS00565at 135.898 kb on + strand, within HGI48_RS00565at 136.157 kb on - strandat 136.157 kb on - strandat 136.220 kb on + strandat 136.220 kb on + strandat 136.220 kb on + strandat 136.221 kb on - strandat 136.221 kb on - strandat 136.221 kb on - strandat 136.221 kb on - strandat 136.514 kb on + strand, within HGI48_RS00570at 136.629 kb on + strand, within HGI48_RS00570at 136.630 kb on - strand, within HGI48_RS00570at 136.630 kb on - strand, within HGI48_RS00570at 136.898 kb on + strand, within HGI48_RS00570at 136.898 kb on + strand, within HGI48_RS00570at 136.898 kb on + strand, within HGI48_RS00570at 136.899 kb on - strand, within HGI48_RS00570at 136.899 kb on - strand, within HGI48_RS00570at 136.899 kb on - strand, within HGI48_RS00570at 136.899 kb on - strand, within HGI48_RS00570at 136.899 kb on - strand, within HGI48_RS00570at 136.942 kb on - strand, within HGI48_RS00570at 136.958 kb on + strandat 137.008 kb on + strandat 137.009 kb on - strandat 137.176 kb on - strand, within HGI48_RS00575at 137.203 kb on - strand, within HGI48_RS00575at 137.203 kb on - strand, within HGI48_RS00575

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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134,320 + +0.4
134,320 + +0.4
134,320 + +0.2
134,320 + +0.1
134,321 - -2.0
134,321 - +0.1
134,339 + -0.7
134,598 + HGI48_RS00560 0.28 -1.2
134,895 + HGI48_RS00560 0.58 -1.8
134,896 - HGI48_RS00560 0.58 -0.6
134,952 + HGI48_RS00560 0.63 -0.3
134,952 + HGI48_RS00560 0.63 +0.2
134,953 - HGI48_RS00560 0.63 +0.5
134,967 + HGI48_RS00560 0.65 -0.4
134,967 + HGI48_RS00560 0.65 -2.1
134,967 + HGI48_RS00560 0.65 -0.4
134,967 + HGI48_RS00560 0.65 -1.1
134,967 + HGI48_RS00560 0.65 -1.6
134,967 + HGI48_RS00560 0.65 -2.1
134,967 + HGI48_RS00560 0.65 -2.7
134,968 - HGI48_RS00560 0.65 -2.8
134,968 - HGI48_RS00560 0.65 -1.3
134,968 - HGI48_RS00560 0.65 +0.2
134,968 - HGI48_RS00560 0.65 +0.5
134,968 - +2.1
134,968 - HGI48_RS00560 0.65 +0.5
134,988 - HGI48_RS00560 0.67 +0.7
135,123 + +3.1
135,124 - HGI48_RS00560 0.80 -0.3
135,189 + HGI48_RS00560 0.87 +0.3
135,189 + HGI48_RS00560 0.87 -0.3
135,190 - HGI48_RS00560 0.87 -1.5
135,197 + HGI48_RS00560 0.87 -2.6
135,239 + -0.3
135,261 + -2.1
135,261 + -1.4
135,261 + -0.3
135,261 + -0.6
135,262 - -2.3
135,262 - +1.4
135,294 + +1.4
135,295 - +0.3
135,317 - +1.1
135,317 - -1.3
135,329 + +0.7
135,329 + +0.3
135,329 + -2.0
135,329 + -2.3
135,329 + +0.1
135,329 + -1.1
135,329 + -0.6
135,330 - -0.8
135,330 - -1.4
135,330 - +1.1
135,330 - -0.3
135,330 - +1.7
135,609 - HGI48_RS00565 0.32 -0.6
135,619 + HGI48_RS00565 0.33 +0.4
135,619 + HGI48_RS00565 0.33 +1.6
135,620 - HGI48_RS00565 0.33 -0.3
135,620 - HGI48_RS00565 0.33 -0.1
135,620 - HGI48_RS00565 0.33 +1.3
135,622 + HGI48_RS00565 0.33 +0.1
135,623 - HGI48_RS00565 0.34 -0.3
135,623 - HGI48_RS00565 0.34 +0.6
135,623 - HGI48_RS00565 0.34 +0.3
135,715 + +0.2
135,848 + HGI48_RS00565 0.58 -0.4
135,898 + HGI48_RS00565 0.64 +0.9
136,157 - -1.4
136,157 - -0.6
136,220 + +0.2
136,220 + -1.8
136,220 + +0.5
136,221 - -1.3
136,221 - +0.0
136,221 - -1.3
136,221 - -0.6
136,514 + HGI48_RS00570 0.35 -0.5
136,629 + HGI48_RS00570 0.49 -2.1
136,630 - HGI48_RS00570 0.49 +1.2
136,630 - HGI48_RS00570 0.49 -0.8
136,898 + HGI48_RS00570 0.81 -0.7
136,898 + HGI48_RS00570 0.81 +0.1
136,898 + HGI48_RS00570 0.81 -2.3
136,899 - HGI48_RS00570 0.81 -0.5
136,899 - HGI48_RS00570 0.81 +0.8
136,899 - HGI48_RS00570 0.81 -0.6
136,899 - HGI48_RS00570 0.81 +0.7
136,899 - HGI48_RS00570 0.81 -1.4
136,942 - HGI48_RS00570 0.87 -2.0
136,958 + +1.7
137,008 + -0.1
137,009 - -1.3
137,176 - HGI48_RS00575 0.17 +0.0
137,203 - HGI48_RS00575 0.21 -1.6
137,203 - HGI48_RS00575 0.21 +0.6

Or see this region's nucleotide sequence