Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00495 and HGI48_RS00500 are separated by 9 nucleotides HGI48_RS00500 and HGI48_RS00505 overlap by 4 nucleotides HGI48_RS00505 and HGI48_RS00510 overlap by 8 nucleotides
HGI48_RS00495: HGI48_RS00495 - acyl--CoA ligase, at 121,506 to 123,089
_RS00495
HGI48_RS00500: HGI48_RS00500 - hypothetical protein, at 123,099 to 124,013
_RS00500
HGI48_RS00505: HGI48_RS00505 - type III PLP-dependent enzyme, at 124,010 to 125,353
_RS00505
HGI48_RS00510: HGI48_RS00510 - hypothetical protein, at 125,346 to 125,657
_RS00510
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 123.232 kb on + strand, within HGI48_RS00500 at 123.233 kb on - strand, within HGI48_RS00500 at 123.409 kb on + strand, within HGI48_RS00500 at 123.409 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.424 kb on + strand, within HGI48_RS00500 at 123.425 kb on - strand, within HGI48_RS00500 at 123.435 kb on + strand, within HGI48_RS00500 at 123.435 kb on + strand at 123.436 kb on - strand, within HGI48_RS00500 at 123.436 kb on - strand, within HGI48_RS00500 at 123.436 kb on - strand, within HGI48_RS00500 at 123.471 kb on + strand, within HGI48_RS00500 at 123.471 kb on + strand, within HGI48_RS00500 at 123.472 kb on - strand, within HGI48_RS00500 at 123.478 kb on - strand, within HGI48_RS00500 at 123.530 kb on - strand, within HGI48_RS00500 at 123.595 kb on + strand, within HGI48_RS00500 at 123.596 kb on - strand, within HGI48_RS00500 at 123.596 kb on - strand, within HGI48_RS00500 at 123.610 kb on + strand, within HGI48_RS00500 at 123.611 kb on - strand, within HGI48_RS00500 at 123.611 kb on - strand at 123.611 kb on - strand, within HGI48_RS00500 at 123.821 kb on + strand, within HGI48_RS00500 at 123.838 kb on - strand, within HGI48_RS00500 at 123.838 kb on - strand, within HGI48_RS00500 at 123.907 kb on + strand at 123.908 kb on - strand, within HGI48_RS00500 at 123.908 kb on - strand, within HGI48_RS00500 at 123.945 kb on + strand at 123.946 kb on - strand at 123.946 kb on - strand at 124.001 kb on + strand at 124.275 kb on + strand, within HGI48_RS00505 at 124.275 kb on + strand, within HGI48_RS00505 at 124.276 kb on - strand, within HGI48_RS00505 at 124.465 kb on - strand, within HGI48_RS00505 at 124.465 kb on - strand, within HGI48_RS00505 at 124.582 kb on - strand, within HGI48_RS00505 at 124.625 kb on + strand at 124.625 kb on + strand, within HGI48_RS00505 at 124.626 kb on - strand, within HGI48_RS00505 at 124.626 kb on - strand, within HGI48_RS00505 at 124.626 kb on - strand, within HGI48_RS00505 at 124.636 kb on + strand, within HGI48_RS00505 at 124.637 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.656 kb on - strand, within HGI48_RS00505 at 124.666 kb on + strand, within HGI48_RS00505 at 124.666 kb on + strand, within HGI48_RS00505 at 124.667 kb on - strand, within HGI48_RS00505 at 124.667 kb on - strand, within HGI48_RS00505 at 124.670 kb on - strand, within HGI48_RS00505 at 124.719 kb on + strand, within HGI48_RS00505 at 124.719 kb on + strand, within HGI48_RS00505 at 124.720 kb on - strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.723 kb on + strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 124.724 kb on - strand, within HGI48_RS00505 at 125.010 kb on + strand, within HGI48_RS00505 at 125.010 kb on + strand, within HGI48_RS00505 at 125.011 kb on - strand, within HGI48_RS00505 at 125.054 kb on + strand, within HGI48_RS00505 at 125.142 kb on + strand, within HGI48_RS00505 at 125.142 kb on + strand, within HGI48_RS00505 at 125.143 kb on - strand, within HGI48_RS00505 at 125.143 kb on - strand, within HGI48_RS00505 at 125.145 kb on + strand, within HGI48_RS00505 at 125.145 kb on + strand, within HGI48_RS00505 at 125.146 kb on - strand, within HGI48_RS00505 at 125.146 kb on - strand, within HGI48_RS00505 at 125.146 kb on - strand, within HGI48_RS00505 at 125.214 kb on + strand, within HGI48_RS00505 at 125.214 kb on + strand, within HGI48_RS00505 at 125.214 kb on + strand, within HGI48_RS00505 at 125.215 kb on - strand, within HGI48_RS00505 at 125.215 kb on - strand, within HGI48_RS00505 at 125.220 kb on + strand at 125.220 kb on + strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.221 kb on - strand at 125.231 kb on - strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.270 kb on + strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.271 kb on - strand at 125.274 kb on + strand at 125.274 kb on + strand at 125.275 kb on - strand at 125.288 kb on + strand at 125.288 kb on + strand at 125.288 kb on + strand at 125.288 kb on + strand at 125.289 kb on - strand at 125.289 kb on - strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.290 kb on + strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.291 kb on - strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.292 kb on + strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.293 kb on - strand at 125.296 kb on + strand at 125.296 kb on + strand at 125.296 kb on + strand at 125.297 kb on - strand at 125.324 kb on - strand at 125.455 kb on + strand, within HGI48_RS00510 at 125.612 kb on + strand, within HGI48_RS00510 at 125.639 kb on + strand at 125.639 kb on + strand at 125.640 kb on - strand at 125.640 kb on - strand at 125.650 kb on + strand at 125.651 kb on - strand at 125.660 kb on + strand at 125.660 kb on + strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.661 kb on - strand at 125.669 kb on + strand at 125.669 kb on + strand at 125.670 kb on - strand at 125.675 kb on + strand at 125.676 kb on - strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.690 kb on + strand at 125.691 kb on - strand at 125.691 kb on - strand at 125.693 kb on - strand at 125.693 kb on - strand at 125.781 kb on + strand at 125.781 kb on + strand at 125.781 kb on + strand at 125.781 kb on + strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.782 kb on - strand at 125.787 kb on - strand at 125.794 kb on + strand at 125.795 kb on - strand at 125.798 kb on + strand at 125.798 kb on + strand at 125.799 kb on - strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.814 kb on + strand at 125.815 kb on - strand at 125.815 kb on - strand at 125.815 kb on - strand at 125.815 kb on - strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.818 kb on + strand at 125.819 kb on - strand at 125.819 kb on - strand at 125.859 kb on - strand at 125.883 kb on + strand at 125.883 kb on + strand at 125.884 kb on - strand at 125.885 kb on + strand at 125.886 kb on - strand at 125.895 kb on + strand at 125.895 kb on + strand at 125.896 kb on - strand at 125.896 kb on - strand at 125.896 kb on - strand at 125.896 kb on - strand at 125.918 kb on + strand at 125.919 kb on - strand at 125.970 kb on - strand at 125.970 kb on - strand at 126.043 kb on + strand at 126.043 kb on + strand at 126.043 kb on + strand at 126.043 kb on + strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.044 kb on - strand at 126.045 kb on + strand at 126.045 kb on + strand at 126.045 kb on + strand at 126.045 kb on + strand at 126.046 kb on - strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.051 kb on + strand at 126.052 kb on - strand at 126.052 kb on - strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.053 kb on + strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.054 kb on - strand at 126.055 kb on + strand at 126.055 kb on + strand at 126.056 kb on - strand at 126.056 kb on - strand at 126.082 kb on + strand at 126.221 kb on + strand at 126.224 kb on + strand at 126.225 kb on - strand at 126.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 123,232 + HGI48_RS00500 0.15 -0.1 123,233 - HGI48_RS00500 0.15 -0.3 123,409 + HGI48_RS00500 0.34 -0.8 123,409 + HGI48_RS00500 0.34 +1.1 123,424 + HGI48_RS00500 0.36 -0.6 123,424 + HGI48_RS00500 0.36 -0.3 123,424 + HGI48_RS00500 0.36 +0.1 123,424 + HGI48_RS00500 0.36 +0.7 123,425 - HGI48_RS00500 0.36 +0.5 123,435 + HGI48_RS00500 0.37 +1.9 123,435 + +0.2 123,436 - HGI48_RS00500 0.37 +0.1 123,436 - HGI48_RS00500 0.37 -0.7 123,436 - HGI48_RS00500 0.37 +1.1 123,471 + HGI48_RS00500 0.41 -1.3 123,471 + HGI48_RS00500 0.41 -1.6 123,472 - HGI48_RS00500 0.41 +0.4 123,478 - HGI48_RS00500 0.41 +1.7 123,530 - HGI48_RS00500 0.47 -0.4 123,595 + HGI48_RS00500 0.54 -1.4 123,596 - HGI48_RS00500 0.54 -0.3 123,596 - HGI48_RS00500 0.54 +0.6 123,610 + HGI48_RS00500 0.56 -1.4 123,611 - HGI48_RS00500 0.56 +0.5 123,611 - +2.1 123,611 - HGI48_RS00500 0.56 +0.2 123,821 + HGI48_RS00500 0.79 +0.3 123,838 - HGI48_RS00500 0.81 -1.3 123,838 - HGI48_RS00500 0.81 +0.7 123,907 + +2.6 123,908 - HGI48_RS00500 0.88 -2.3 123,908 - HGI48_RS00500 0.88 -0.5 123,945 + -0.8 123,946 - +0.5 123,946 - +0.2 124,001 + +1.2 124,275 + HGI48_RS00505 0.20 +0.2 124,275 + HGI48_RS00505 0.20 +0.9 124,276 - HGI48_RS00505 0.20 -0.7 124,465 - HGI48_RS00505 0.34 +0.6 124,465 - HGI48_RS00505 0.34 -0.1 124,582 - HGI48_RS00505 0.43 -2.4 124,625 + +0.7 124,625 + HGI48_RS00505 0.46 +0.3 124,626 - HGI48_RS00505 0.46 +1.0 124,626 - HGI48_RS00505 0.46 +0.7 124,626 - HGI48_RS00505 0.46 -0.4 124,636 + HGI48_RS00505 0.47 +0.3 124,637 - HGI48_RS00505 0.47 +1.0 124,656 - HGI48_RS00505 0.48 -0.7 124,656 - HGI48_RS00505 0.48 -0.8 124,656 - HGI48_RS00505 0.48 -0.3 124,656 - HGI48_RS00505 0.48 -0.8 124,666 + HGI48_RS00505 0.49 +0.6 124,666 + HGI48_RS00505 0.49 -0.6 124,667 - HGI48_RS00505 0.49 -0.1 124,667 - HGI48_RS00505 0.49 -2.1 124,670 - HGI48_RS00505 0.49 -0.0 124,719 + HGI48_RS00505 0.53 +0.1 124,719 + HGI48_RS00505 0.53 +2.3 124,720 - HGI48_RS00505 0.53 -0.2 124,723 + HGI48_RS00505 0.53 +2.2 124,723 + HGI48_RS00505 0.53 -0.3 124,723 + HGI48_RS00505 0.53 +0.2 124,723 + HGI48_RS00505 0.53 +1.0 124,723 + HGI48_RS00505 0.53 -2.1 124,724 - HGI48_RS00505 0.53 +1.5 124,724 - HGI48_RS00505 0.53 -0.5 124,724 - HGI48_RS00505 0.53 +0.6 124,724 - HGI48_RS00505 0.53 +1.6 125,010 + HGI48_RS00505 0.74 -1.6 125,010 + HGI48_RS00505 0.74 -0.3 125,011 - HGI48_RS00505 0.74 -0.3 125,054 + HGI48_RS00505 0.78 +0.3 125,142 + HGI48_RS00505 0.84 +0.7 125,142 + HGI48_RS00505 0.84 +0.4 125,143 - HGI48_RS00505 0.84 +0.6 125,143 - HGI48_RS00505 0.84 +0.5 125,145 + HGI48_RS00505 0.84 -2.4 125,145 + HGI48_RS00505 0.84 +1.2 125,146 - HGI48_RS00505 0.85 +1.0 125,146 - HGI48_RS00505 0.85 -1.3 125,146 - HGI48_RS00505 0.85 +1.6 125,214 + HGI48_RS00505 0.90 +0.5 125,214 + HGI48_RS00505 0.90 -3.1 125,214 + HGI48_RS00505 0.90 -0.3 125,215 - HGI48_RS00505 0.90 -1.0 125,215 - HGI48_RS00505 0.90 -0.1 125,220 + +0.2 125,220 + +0.6 125,221 - -0.8 125,221 - +1.1 125,221 - -2.4 125,221 - +0.1 125,221 - +1.9 125,221 - +1.3 125,231 - +0.7 125,270 + +0.3 125,270 + +1.6 125,270 + +0.7 125,270 + +3.0 125,270 + -1.1 125,270 + +1.0 125,270 + +1.1 125,271 - -0.8 125,271 - -0.1 125,271 - +0.6 125,271 - -1.1 125,271 - +0.7 125,271 - -0.6 125,271 - -1.6 125,271 - -0.6 125,274 + -1.0 125,274 + -0.0 125,275 - -0.2 125,288 + +1.7 125,288 + +3.0 125,288 + +0.1 125,288 + -0.8 125,289 - +1.6 125,289 - +0.3 125,290 + +0.2 125,290 + +0.1 125,290 + +0.2 125,290 + -0.1 125,290 + +1.5 125,290 + -1.8 125,290 + -2.1 125,290 + -0.8 125,290 + +0.2 125,290 + +1.0 125,290 + +1.4 125,290 + +1.2 125,290 + +0.7 125,290 + -2.6 125,290 + +0.2 125,290 + -0.3 125,290 + +1.1 125,291 - +1.1 125,291 - +1.1 125,291 - +1.0 125,291 - -0.8 125,291 - -2.1 125,291 - +0.4 125,291 - +0.9 125,291 - -0.8 125,291 - -0.3 125,291 - +1.2 125,291 - -2.3 125,291 - -0.4 125,291 - -1.8 125,291 - +1.9 125,291 - -0.5 125,291 - -2.6 125,291 - -1.3 125,291 - +1.5 125,292 + +0.3 125,292 + -1.6 125,292 + -0.3 125,292 + +0.3 125,292 + +1.6 125,292 + +0.7 125,292 + +1.6 125,292 + +0.5 125,292 + +1.6 125,292 + +0.1 125,293 - +1.0 125,293 - -0.4 125,293 - +0.7 125,293 - -2.3 125,293 - +2.2 125,293 - +0.0 125,293 - +1.3 125,293 - +0.2 125,293 - +0.4 125,296 + +1.7 125,296 + +0.2 125,296 + -0.2 125,297 - +0.3 125,324 - +0.2 125,455 + HGI48_RS00510 0.35 +0.6 125,612 + HGI48_RS00510 0.85 +0.3 125,639 + -0.3 125,639 + +0.1 125,640 - -1.2 125,640 - -2.0 125,650 + +0.3 125,651 - -0.0 125,660 + +0.3 125,660 + +0.6 125,661 - -2.1 125,661 - +0.3 125,661 - +1.3 125,661 - -1.1 125,661 - +0.6 125,669 + -1.6 125,669 + +0.0 125,670 - -0.5 125,675 + +0.0 125,676 - -0.8 125,690 + +0.1 125,690 + -0.1 125,690 + -1.3 125,690 + -2.4 125,690 + +1.1 125,690 + -1.1 125,691 - -0.8 125,691 - +0.7 125,693 - -0.3 125,693 - +0.0 125,781 + +0.7 125,781 + -1.3 125,781 + -1.3 125,781 + +1.0 125,782 - +0.4 125,782 - -0.3 125,782 - -0.2 125,782 - +1.6 125,782 - +0.9 125,787 - -0.3 125,794 + +1.2 125,795 - -0.3 125,798 + -2.1 125,798 + +0.1 125,799 - -2.1 125,814 + +1.5 125,814 + +0.2 125,814 + -0.1 125,814 + -1.1 125,814 + +0.5 125,814 + -1.8 125,814 + -0.6 125,815 - +0.6 125,815 - -0.5 125,815 - -0.2 125,815 - -0.3 125,818 + +0.0 125,818 + +0.5 125,818 + +0.2 125,818 + +1.1 125,818 + -1.4 125,819 - +0.7 125,819 - +1.1 125,859 - +0.7 125,883 + -0.8 125,883 + +0.2 125,884 - +2.3 125,885 + -1.0 125,886 - -0.8 125,895 + -2.6 125,895 + +0.3 125,896 - -0.1 125,896 - +1.2 125,896 - -0.3 125,896 - -0.8 125,918 + -0.8 125,919 - +0.4 125,970 - -1.5 125,970 - -0.8 126,043 + -0.8 126,043 + -1.3 126,043 + -0.4 126,043 + -0.3 126,044 - +0.1 126,044 - -0.9 126,044 - +1.3 126,044 - -1.8 126,044 - +0.7 126,045 + +1.1 126,045 + -1.4 126,045 + +1.2 126,045 + +0.3 126,046 - +1.1 126,051 + -1.8 126,051 + +1.9 126,051 + -0.5 126,051 + +1.3 126,051 + +0.5 126,051 + -0.6 126,051 + +0.5 126,052 - +1.5 126,052 - -0.3 126,053 + -1.1 126,053 + +0.7 126,053 + -0.6 126,053 + +0.0 126,053 + -0.6 126,053 + -0.4 126,053 + +1.2 126,053 + -0.6 126,053 + +2.5 126,053 + -1.6 126,053 + -0.1 126,054 - -0.6 126,054 - -0.3 126,054 - +0.4 126,054 - +0.6 126,054 - -0.1 126,054 - -2.3 126,054 - -0.3 126,054 - -1.6 126,055 + -0.1 126,055 + -1.6 126,056 - -0.6 126,056 - +1.2 126,082 + -1.3 126,221 + +0.3 126,224 + -0.2 126,225 - -0.9 126,316 + +0.8
Or see this region's nucleotide sequence