Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00405

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
101,077	+		HGI48_RS00395	0.17	+0.3
101,077	+				+1.5
101,077	+				-0.8
101,077	+		HGI48_RS00395	0.17	+0.3
101,077	+		HGI48_RS00395	0.17	+2.0
101,077	+		HGI48_RS00395	0.17	-1.3
101,078	-		HGI48_RS00395	0.17	+1.6
101,078	-		HGI48_RS00395	0.17	+2.2
101,395	+		HGI48_RS00395	0.69	+2.1
101,461	-		HGI48_RS00395	0.79	+0.9
101,461	-		HGI48_RS00395	0.79	+0.5
101,511	+		HGI48_RS00395	0.88	+1.0
101,511	+		HGI48_RS00395	0.88	+0.7
101,527	+				+0.8
101,527	+				-1.8
101,528	-				+1.1
101,528	-				+1.0
101,546	-				-3.2
101,546	-				+0.3
101,546	-				-1.1
101,589	-				-1.3
101,812	+		HGI48_RS00400	0.61	+0.1
101,837	-		HGI48_RS00400	0.75	-2.1
101,879	+				-1.8
101,879	+				+0.0
101,879	+				-0.6
101,879	+				-0.8
101,879	+				-1.3
101,879	+				+1.3
101,879	+				-0.7
101,879	+				+0.0
101,879	+				-0.8
101,880	-				-1.3
101,880	-				+0.0
101,880	-				+0.7
101,881	+				+0.7
101,881	+				+0.5
101,882	-				+0.6
101,882	-				-0.1
101,882	-				-1.0
101,924	+				+0.2
101,924	+				-2.9
101,930	+				-1.3
101,930	+				+0.6
101,930	+				-0.4
101,930	+				+1.2
101,930	+				-0.6
101,930	+				-0.7
101,930	+				-1.4
101,931	-				-1.3
101,931	-				-1.2
101,931	-				-1.8
101,931	-				-0.1
101,931	-				-1.4
101,931	-				+0.7
101,931	-				-0.4
101,931	-				-0.3
101,934	-				+1.5
101,978	-				+0.6
101,978	-				-0.4
101,978	-				+2.3
102,005	+				+0.2
102,005	+		HGI48_RS00405	0.12	+0.1
102,005	+		HGI48_RS00405	0.12	+0.4
102,005	+		HGI48_RS00405	0.12	+0.1
102,006	-		HGI48_RS00405	0.12	-0.3
102,090	+		HGI48_RS00405	0.20	+0.6
102,090	+		HGI48_RS00405	0.20	+0.4
102,090	+		HGI48_RS00405	0.20	+1.3
102,090	+		HGI48_RS00405	0.20	-0.6
102,090	+		HGI48_RS00405	0.20	+0.0
102,090	+		HGI48_RS00405	0.20	-0.1
102,091	-				+0.7
102,091	-				+0.2
102,091	-		HGI48_RS00405	0.20	-0.6
102,091	-		HGI48_RS00405	0.20	-1.9
102,091	-		HGI48_RS00405	0.20	-0.1
102,091	-		HGI48_RS00405	0.20	-1.1
102,091	-		HGI48_RS00405	0.20	+0.3
102,092	+		HGI48_RS00405	0.20	-0.4
102,092	+				-0.3
102,092	+				+1.2
102,092	+		HGI48_RS00405	0.20	-1.8
102,092	+		HGI48_RS00405	0.20	-1.6
102,092	+		HGI48_RS00405	0.20	+1.3
102,093	-		HGI48_RS00405	0.20	-1.9
102,093	-		HGI48_RS00405	0.20	+0.9
102,113	+				+0.2
102,113	+		HGI48_RS00405	0.22	-0.3
102,113	+		HGI48_RS00405	0.22	+0.0
102,113	+		HGI48_RS00405	0.22	-0.1
102,113	+		HGI48_RS00405	0.22	+0.3
102,114	-		HGI48_RS00405	0.22	-1.1
102,115	+		HGI48_RS00405	0.22	-2.0
102,115	+		HGI48_RS00405	0.22	-1.3
102,115	+		HGI48_RS00405	0.22	+0.2
102,115	+				+1.7
102,115	+				+0.7
102,115	+		HGI48_RS00405	0.22	-0.2
102,115	+		HGI48_RS00405	0.22	+0.7
102,116	-		HGI48_RS00405	0.23	-0.3
102,116	-		HGI48_RS00405	0.23	+1.3
102,116	-		HGI48_RS00405	0.23	+0.3
102,116	-		HGI48_RS00405	0.23	-1.8
102,116	-		HGI48_RS00405	0.23	+0.4
102,116	-		HGI48_RS00405	0.23	-0.8
102,122	+				+1.7
102,122	+				+0.7
102,122	+		HGI48_RS00405	0.23	+1.4
102,122	+		HGI48_RS00405	0.23	-0.7
102,123	-		HGI48_RS00405	0.23	-1.1
102,123	-		HGI48_RS00405	0.23	-1.3
102,123	-		HGI48_RS00405	0.23	-0.6
102,124	+		HGI48_RS00405	0.23	-1.6
102,124	+		HGI48_RS00405	0.23	+0.5
102,125	-		HGI48_RS00405	0.23	-1.3
102,125	-		HGI48_RS00405	0.23	-0.6
102,125	-		HGI48_RS00405	0.23	+0.7
102,125	-				+1.7
102,125	-		HGI48_RS00405	0.23	-0.3
102,125	-				-0.3
102,194	+				+1.2
102,194	+		HGI48_RS00405	0.30	-0.5
102,194	+				-0.3
102,194	+		HGI48_RS00405	0.30	+1.7
102,194	+		HGI48_RS00405	0.30	-0.4
102,194	+		HGI48_RS00405	0.30	-1.3
102,195	-				+0.2
102,195	-		HGI48_RS00405	0.30	-0.3
102,195	-		HGI48_RS00405	0.30	-0.5
102,195	-		HGI48_RS00405	0.30	-2.8
102,195	-		HGI48_RS00405	0.30	+0.2
102,195	-		HGI48_RS00405	0.30	-1.0
102,195	-		HGI48_RS00405	0.30	-1.0
102,277	+		HGI48_RS00405	0.37	-0.0
102,278	-		HGI48_RS00405	0.37	-0.7
102,278	-				-0.8
102,304	-		HGI48_RS00405	0.40	-0.1
102,380	+		HGI48_RS00405	0.47	+0.0
102,380	+		HGI48_RS00405	0.47	-0.5
102,469	+		HGI48_RS00405	0.55	+1.2
102,470	-		HGI48_RS00405	0.55	-1.1
102,662	-				-0.8
102,767	+		HGI48_RS00405	0.82	+0.7
102,767	+		HGI48_RS00405	0.82	-0.2
102,768	-		HGI48_RS00405	0.82	-0.7
102,768	-				+1.3
102,768	-		HGI48_RS00405	0.82	-0.6
102,768	-		HGI48_RS00405	0.82	+1.1
102,768	-		HGI48_RS00405	0.82	-0.8
102,768	-		HGI48_RS00405	0.82	+1.2
102,799	-		HGI48_RS00405	0.85	-1.6
102,837	+		HGI48_RS00405	0.89	+0.7
102,837	+		HGI48_RS00405	0.89	-0.3
102,923	+				+0.7
102,924	-				-0.6
102,955	-				+1.7
102,978	+				-1.3
102,979	-				-0.1
102,979	-				-0.8
102,979	-				-0.1
103,021	+				+0.7
103,021	+				+0.7
103,022	-				+0.7
103,022	-				+1.3
103,022	-				-0.3
103,041	-				+0.7
103,091	+		HGI48_RS00410	0.13	+3.3
103,091	+		HGI48_RS00410	0.13	+2.0
103,092	-		HGI48_RS00410	0.13	+1.0
103,095	-		HGI48_RS00410	0.13	-2.7
103,162	+		HGI48_RS00410	0.25	+0.4
103,162	+		HGI48_RS00410	0.25	+3.0
103,183	+		HGI48_RS00410	0.29	-1.6
103,183	+		HGI48_RS00410	0.29	+0.3
103,238	-		HGI48_RS00410	0.39	+1.8
103,244	+		HGI48_RS00410	0.40	+1.7
103,271	+		HGI48_RS00410	0.45	-0.3
103,271	+		HGI48_RS00410	0.45	-0.3
103,271	+		HGI48_RS00410	0.45	+0.2
103,271	+		HGI48_RS00410	0.45	-0.6
103,272	-		HGI48_RS00410	0.45	+2.2
103,272	-		HGI48_RS00410	0.45	+1.7
103,302	+		HGI48_RS00410	0.50	+2.5
103,303	-		HGI48_RS00410	0.50	+0.3
103,303	-		HGI48_RS00410	0.50	+0.9
103,303	-		HGI48_RS00410	0.50	+1.8
103,303	-		HGI48_RS00410	0.50	+1.8
103,329	-		HGI48_RS00410	0.55	+0.9
103,334	+		HGI48_RS00410	0.56	+0.5
103,334	+		HGI48_RS00410	0.56	+1.3
103,336	+		HGI48_RS00410	0.56	+1.3
103,337	-		HGI48_RS00410	0.56	-1.0
103,407	-		HGI48_RS00410	0.69	-0.7
103,407	-		HGI48_RS00410	0.69	-0.7
103,409	+		HGI48_RS00410	0.69	+4.0
103,409	+		HGI48_RS00410	0.69	+0.4
103,409	+		HGI48_RS00410	0.69	+2.3
103,409	+		HGI48_RS00410	0.69	-1.3
103,410	-				+1.7
103,412	+		HGI48_RS00410	0.70	-0.2
103,412	+		HGI48_RS00410	0.70	+1.3
103,413	-		HGI48_RS00410	0.70	-0.5
103,434	-		HGI48_RS00410	0.73	+1.0
103,435	+		HGI48_RS00410	0.74	-0.2
103,435	+		HGI48_RS00410	0.74	+2.7
103,436	-		HGI48_RS00410	0.74	+0.7
103,436	-		HGI48_RS00410	0.74	+1.8
103,436	-		HGI48_RS00410	0.74	+2.6
103,442	+		HGI48_RS00410	0.75	+4.0
103,443	-				+2.3
103,443	-		HGI48_RS00410	0.75	+0.0
103,466	+		HGI48_RS00410	0.79	+1.0
103,466	+		HGI48_RS00410	0.79	+1.9
103,467	-		HGI48_RS00410	0.79	-2.1
103,470	-		HGI48_RS00410	0.80	+0.5
103,470	-		HGI48_RS00410	0.80	+2.5
103,496	+		HGI48_RS00410	0.84	+1.7
103,510	+		HGI48_RS00410	0.87	+0.4
103,511	-		HGI48_RS00410	0.87	+1.7
103,511	-		HGI48_RS00410	0.87	+2.1
103,511	-		HGI48_RS00410	0.87	+0.7
103,514	+				+5.0
103,515	-		HGI48_RS00410	0.88	+1.9
103,542	-				+0.7
103,564	+				+2.1
103,565	-				-1.3
103,565	-				+1.2
103,565	-				+2.9
103,575	+				+2.1
103,575	+				+1.7
103,576	-				+2.7
103,576	-				+0.6
103,576	-				-0.7
103,667	+				-1.0
103,667	+				+0.0
103,667	+				+0.3
103,667	+				-0.1
103,667	+				+2.1
103,667	+				+2.6
103,667	+				-0.3
103,667	+				+2.5
103,667	+				+0.3
103,668	-				+0.7
103,668	-				+0.2
103,687	+				+0.6
103,746	+				-0.6
103,747	-				-0.4
103,890	+				+0.7
103,891	-				+0.2
103,891	-				-1.8
103,891	-				-1.6