Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21235

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,739,478	+				-2.2
4,739,507	+				-0.4
4,739,659	+		HGI48_RS21230	0.23	-2.0
4,739,659	+		HGI48_RS21230	0.23	-2.7
4,739,659	+		HGI48_RS21230	0.23	+0.8
4,739,659	+		HGI48_RS21230	0.23	-1.8
4,739,670	+		HGI48_RS21230	0.24	-1.5
4,739,670	+		HGI48_RS21230	0.24	-0.9
4,739,670	+		HGI48_RS21230	0.24	+0.1
4,739,670	+		HGI48_RS21230	0.24	-0.4
4,739,670	+		HGI48_RS21230	0.24	-1.4
4,739,686	+		HGI48_RS21230	0.26	-2.4
4,739,686	+		HGI48_RS21230	0.26	-0.8
4,739,686	+				-0.8
4,739,686	+		HGI48_RS21230	0.26	-3.0
4,739,686	+				-0.8
4,739,686	+		HGI48_RS21230	0.26	+1.1
4,739,686	+		HGI48_RS21230	0.26	-0.5
4,739,686	+		HGI48_RS21230	0.26	-1.2
4,739,686	+				+2.0
4,739,687	-		HGI48_RS21230	0.26	-1.7
4,739,687	-		HGI48_RS21230	0.26	-0.5
4,739,687	-		HGI48_RS21230	0.26	-0.5
4,739,687	-		HGI48_RS21230	0.26	-0.2
4,739,915	+		HGI48_RS21230	0.47	-0.5
4,739,915	+		HGI48_RS21230	0.47	-2.7
4,739,915	+		HGI48_RS21230	0.47	-0.8
4,739,915	+		HGI48_RS21230	0.47	-0.8
4,739,916	-		HGI48_RS21230	0.48	-0.0
4,739,916	-		HGI48_RS21230	0.48	+1.1
4,739,916	-		HGI48_RS21230	0.48	-0.0
4,739,954	-		HGI48_RS21230	0.51	-1.2
4,740,033	+				+0.2
4,740,034	-		HGI48_RS21230	0.59	+0.1
4,740,129	+		HGI48_RS21230	0.68	-0.5
4,740,129	+		HGI48_RS21230	0.68	-2.4
4,740,129	+		HGI48_RS21230	0.68	-1.0
4,740,130	-		HGI48_RS21230	0.68	-1.0
4,740,263	-		HGI48_RS21230	0.81	+0.8
4,740,310	+		HGI48_RS21230	0.85	-0.2
4,740,310	+		HGI48_RS21230	0.85	-2.9
4,740,310	+		HGI48_RS21230	0.85	+0.5
4,740,311	-		HGI48_RS21230	0.85	-1.2
4,740,311	-		HGI48_RS21230	0.85	-0.9
4,740,311	-		HGI48_RS21230	0.85	+1.1
4,740,321	-		HGI48_RS21230	0.86	-1.5
4,740,412	+				-2.4
4,740,412	+				-1.5
4,740,431	-				-1.2
4,740,446	+				-0.5
4,740,447	-				-1.5
4,740,488	+				+1.3
4,740,489	-				-0.5
4,740,510	+				+0.6
4,740,510	+				-1.5
4,740,510	+				-0.8
4,740,623	+		HGI48_RS21235	0.10	-2.0
4,740,623	+		HGI48_RS21235	0.10	-1.9
4,740,623	+		HGI48_RS21235	0.10	-2.6
4,740,623	+		HGI48_RS21235	0.10	-1.5
4,740,623	+		HGI48_RS21235	0.10	-2.4
4,740,623	+		HGI48_RS21235	0.10	-2.2
4,740,624	-		HGI48_RS21235	0.11	-1.5
4,740,624	-		HGI48_RS21235	0.11	-1.2
4,740,624	-		HGI48_RS21235	0.11	-1.2
4,740,624	-		HGI48_RS21235	0.11	-1.1
4,740,624	-		HGI48_RS21235	0.11	-1.5
4,740,624	-		HGI48_RS21235	0.11	-1.9
4,740,624	-		HGI48_RS21235	0.11	-1.5
4,740,682	-		HGI48_RS21235	0.15	+0.4
4,740,838	+				-0.8
4,740,838	+				+0.2
4,740,839	-		HGI48_RS21235	0.26	-1.8
4,740,839	-				+0.2
4,740,839	-		HGI48_RS21235	0.26	-1.2
4,740,839	-		HGI48_RS21235	0.26	-0.2
4,740,841	-		HGI48_RS21235	0.26	+0.1
4,740,926	+		HGI48_RS21235	0.32	-0.5
4,740,926	+		HGI48_RS21235	0.32	-2.4
4,740,926	+		HGI48_RS21235	0.32	+2.3
4,740,927	-		HGI48_RS21235	0.32	-2.5
4,740,927	-		HGI48_RS21235	0.32	-2.8
4,740,927	-		HGI48_RS21235	0.32	-2.2
4,740,927	-		HGI48_RS21235	0.32	+0.1
4,741,029	+		HGI48_RS21235	0.39	-1.5
4,741,053	+				-0.8
4,741,065	+		HGI48_RS21235	0.42	-2.1
4,741,276	+		HGI48_RS21235	0.57	-1.8
4,741,400	+		HGI48_RS21235	0.65	-0.2
4,741,428	+		HGI48_RS21235	0.67	-1.5
4,741,448	-				+0.8
4,741,564	-		HGI48_RS21235	0.77	-1.9
4,741,932	-				+0.3
4,741,932	-				-1.0
4,742,005	+				-0.2
4,742,005	+				-0.2
4,742,006	-				-0.1
4,742,006	-				+1.0
4,742,046	+				+1.1
4,742,046	+				+0.1
4,742,047	-				-0.4
4,742,047	-				-1.4
4,742,047	-				-1.2
4,742,047	-				-0.8
4,742,047	-				+1.1
4,742,055	+				+2.1
4,742,055	+				-0.3
4,742,055	+				-0.0
4,742,055	+				+0.4
4,742,056	-				+0.6
4,742,056	-				+0.8
4,742,057	+				+0.1
4,742,057	+				+0.8
4,742,057	+				-1.2
4,742,057	+				-0.2
4,742,057	+				+0.6
4,742,057	+				-0.2
4,742,057	+				+0.4
4,742,057	+				+3.0
4,742,057	+				-0.8
4,742,057	+				+0.1
4,742,057	+				+1.1
4,742,057	+				-1.8
4,742,057	+				-2.8
4,742,057	+				-0.2
4,742,057	+				-0.4
4,742,057	+				+1.0
4,742,057	+				+0.1
4,742,057	+				+0.0
4,742,057	+				-0.6
4,742,058	-				+0.4
4,742,058	-				-3.2
4,742,058	-				-1.5
4,742,058	-				-1.2
4,742,058	-				+0.4
4,742,058	-				-0.2
4,742,058	-				-0.8
4,742,058	-				-1.8
4,742,058	-				+0.6
4,742,058	-				-2.1
4,742,058	-				-0.0
4,742,058	-				+1.1
4,742,058	-				+0.6
4,742,058	-				-1.4
4,742,058	-				-1.2
4,742,058	-				+1.0
4,742,064	+				+0.4
4,742,064	+				-1.9
4,742,064	+				-1.1
4,742,064	+				+0.8
4,742,065	-				+0.1
4,742,069	+				-1.6
4,742,069	+				+1.2
4,742,069	+				+0.4
4,742,070	-				+1.4
4,742,070	-				-3.0
4,742,070	-				-1.5
4,742,070	-				+0.1
4,742,070	-				-0.5
4,742,088	+				-0.0
4,742,089	+				-0.2
4,742,089	+				+0.3
4,742,089	+				+1.7
4,742,090	-				-1.5
4,742,090	-				+0.1
4,742,090	-				-0.1
4,742,090	-				-0.8
4,742,090	-				-0.4
4,742,092	+				-1.5
4,742,092	+				-1.5
4,742,092	+				-1.0
4,742,093	-				-0.2
4,742,093	-				-0.8
4,742,093	-				-1.5
4,742,093	-				-1.1
4,742,093	-				+0.7
4,742,117	-				-0.7
4,742,241	+				-0.9
4,742,241	+				+0.1
4,742,241	+				+0.2
4,742,242	-				+1.6
4,742,301	+				-2.2
4,742,301	+				+0.6
4,742,301	+				-0.8
4,742,301	+				-1.0
4,742,304	-				+1.3
4,742,304	-				+1.8
4,742,359	+				+0.1
4,742,359	+				+0.8
4,742,360	-				-2.7
4,742,363	+				+0.6
4,742,363	+				+0.2
4,742,363	+				-0.6
4,742,363	+				-1.0
4,742,363	+				+0.1
4,742,363	+				-0.7
4,742,363	+				-0.2
4,742,363	+				-0.4
4,742,363	+				+0.2
4,742,363	+				-2.8
4,742,363	+				-0.9
4,742,364	-				+0.8
4,742,364	-				-2.4
4,742,364	-				-0.0
4,742,364	-				-0.2
4,742,364	-				+0.4
4,742,385	+				+0.4
4,742,385	+				-0.4
4,742,385	+				-1.2
4,742,385	+				-0.9
4,742,386	-				+1.0
4,742,386	-				+0.2
4,742,424	+				-1.8
4,742,425	-				+1.8
4,742,495	+		HGI48_RS21245	0.13	-0.4
4,742,516	+		HGI48_RS21245	0.14	+1.9
4,742,516	+		HGI48_RS21245	0.14	-0.6
4,742,516	+		HGI48_RS21245	0.14	-2.0
4,742,516	+		HGI48_RS21245	0.14	-1.3
4,742,516	+		HGI48_RS21245	0.14	-0.6
4,742,516	+		HGI48_RS21245	0.14	-1.3
4,742,516	+		HGI48_RS21245	0.14	-1.5
4,742,517	-		HGI48_RS21245	0.15	+0.4
4,742,517	-		HGI48_RS21245	0.15	+0.7
4,742,517	-		HGI48_RS21245	0.15	-0.2
4,742,517	-		HGI48_RS21245	0.15	-2.1
4,742,608	+		HGI48_RS21245	0.21	+0.8
4,742,608	+				+3.0
4,742,651	+		HGI48_RS21245	0.24	-1.7
4,742,651	+		HGI48_RS21245	0.24	-0.6
4,742,651	+		HGI48_RS21245	0.24	-1.1
4,742,651	+		HGI48_RS21245	0.24	-0.6
4,742,651	+		HGI48_RS21245	0.24	-2.5
4,742,651	+		HGI48_RS21245	0.24	-1.5
4,742,652	-		HGI48_RS21245	0.24	-2.0
4,742,652	-		HGI48_RS21245	0.24	-0.2
4,742,655	-		HGI48_RS21245	0.25	-0.2
4,742,684	+		HGI48_RS21245	0.27	-0.2
4,742,684	+		HGI48_RS21245	0.27	+0.4
4,742,684	+		HGI48_RS21245	0.27	+0.8
4,742,684	+		HGI48_RS21245	0.27	-0.0
4,742,684	+		HGI48_RS21245	0.27	-0.8
4,742,684	+		HGI48_RS21245	0.27	+0.9
4,742,684	+		HGI48_RS21245	0.27	+0.6
4,742,684	+		HGI48_RS21245	0.27	+0.3
4,742,684	+		HGI48_RS21245	0.27	+0.5
4,742,685	-		HGI48_RS21245	0.27	+0.1
4,742,685	-		HGI48_RS21245	0.27	-2.7
4,742,685	-		HGI48_RS21245	0.27	-0.8
4,742,685	-		HGI48_RS21245	0.27	+1.9
4,742,685	-				+2.0
4,742,685	-		HGI48_RS21245	0.27	-0.8
4,742,753	+		HGI48_RS21245	0.32	+0.4
4,742,753	+		HGI48_RS21245	0.32	-0.8
4,742,754	-		HGI48_RS21245	0.32	+0.1
4,742,754	-		HGI48_RS21245	0.32	-1.4
4,742,754	-		HGI48_RS21245	0.32	-0.5