Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20780

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,640,340	-				+0.8
4,640,357	+				-0.8
4,640,395	+				+1.2
4,640,396	-				+0.5
4,640,424	+				+0.5
4,640,424	+				-0.1
4,640,424	+				+1.4
4,640,424	+				+1.2
4,640,425	-				+1.5
4,640,425	-				+0.5
4,640,425	-				+0.7
4,640,425	-				+0.8
4,640,512	+				+0.3
4,640,512	+				-0.1
4,640,512	+				+0.2
4,640,512	+				+0.6
4,640,512	+				-0.8
4,640,512	+				+0.2
4,640,512	+				+0.6
4,640,513	-				+0.4
4,640,513	-				+0.4
4,640,514	+				+1.4
4,640,514	+				-1.5
4,640,514	+				-0.0
4,640,515	-				-0.8
4,640,515	-				+1.2
4,640,515	-				-0.5
4,640,518	+				+1.1
4,640,518	+				+0.4
4,640,518	+				-0.5
4,640,519	-				+0.4
4,640,648	-				+0.4
4,640,658	+				-2.0
4,640,658	+				+0.2
4,640,658	+				-1.1
4,640,658	+				+0.9
4,640,658	+				-0.0
4,640,658	+				+0.4
4,640,658	+				+0.6
4,640,658	+				-1.1
4,640,658	+				+1.0
4,640,658	+				+0.1
4,640,658	+				+0.4
4,640,658	+				-1.2
4,640,658	+				-1.2
4,640,658	+				-0.2
4,640,658	+				+0.3
4,640,658	+				-0.2
4,640,659	-				-0.2
4,640,659	-				-0.8
4,640,659	-				+1.4
4,640,659	-				+0.8
4,640,659	-				+0.2
4,640,659	-				-1.0
4,640,659	-				-0.2
4,640,659	-				-0.5
4,640,659	-				+0.4
4,640,659	-				-0.5
4,640,701	+				-0.8
4,640,701	+				+1.0
4,640,702	-				-0.2
4,640,702	-				+0.1
4,640,702	-				-2.2
4,640,748	+		HGI48_RS20775	0.14	+0.1
4,640,816	-		HGI48_RS20775	0.25	+1.6
4,640,906	-		HGI48_RS20775	0.39	+1.4
4,640,926	+		HGI48_RS20775	0.42	+0.5
4,640,926	+		HGI48_RS20775	0.42	-1.2
4,640,926	+		HGI48_RS20775	0.42	-1.5
4,640,926	+		HGI48_RS20775	0.42	+0.8
4,640,926	+		HGI48_RS20775	0.42	-2.0
4,640,927	-		HGI48_RS20775	0.43	+0.5
4,640,927	-				+1.8
4,640,927	-		HGI48_RS20775	0.43	+0.6
4,640,994	+		HGI48_RS20775	0.53	+0.7
4,640,995	-		HGI48_RS20775	0.53	-2.4
4,641,020	+		HGI48_RS20775	0.57	+1.8
4,641,109	+		HGI48_RS20775	0.71	-0.7
4,641,109	+		HGI48_RS20775	0.71	+0.3
4,641,109	+		HGI48_RS20775	0.71	+0.6
4,641,110	-		HGI48_RS20775	0.72	+0.4
4,641,110	-		HGI48_RS20775	0.72	+0.2
4,641,110	-		HGI48_RS20775	0.72	-2.2
4,641,165	-		HGI48_RS20775	0.80	+0.5
4,641,244	+				-1.0
4,641,245	-				-0.8
4,641,280	+				-2.9
4,641,281	-				-1.3
4,641,281	-				-0.4
4,641,281	-				-1.8
4,641,281	-				-0.8
4,641,281	-				-1.4
4,641,282	+				+1.1
4,641,282	+				+0.4
4,641,282	+				-1.5
4,641,282	+				+1.4
4,641,282	+				-0.6
4,641,282	+				+0.1
4,641,283	-				+1.2
4,641,286	+				-0.3
4,641,286	+				+0.2
4,641,286	+				+0.8
4,641,405	-		HGI48_RS20780	0.29	-0.4
4,641,407	-		HGI48_RS20780	0.30	-1.8
4,641,497	+		HGI48_RS20780	0.67	+0.8
4,641,497	+		HGI48_RS20780	0.67	-1.2
4,641,498	-		HGI48_RS20780	0.67	-2.0
4,641,621	+				-0.8
4,641,621	+				-2.2
4,641,622	-				+0.6
4,641,626	+				-1.2
4,641,627	-				-1.8
4,641,667	-				-0.8
4,641,692	-				+0.8
4,641,758	+				-0.5
4,641,758	+				+0.6
4,641,758	+				-1.8
4,641,758	+				-0.9
4,641,758	+				+2.1
4,641,758	+				+1.4
4,641,758	+				-1.3
4,641,758	+				+1.3
4,641,759	-				-0.4
4,641,759	-				-0.8
4,641,759	-				-0.2
4,641,759	-				+0.3
4,641,759	-				-1.4
4,641,760	+				-0.0
4,641,760	+				-0.0
4,641,760	+				-2.4
4,641,760	+				+0.8
4,641,760	+				-0.5
4,641,760	+				-0.2
4,641,760	+				+0.7
4,641,760	+				-2.5
4,641,760	+				-2.2
4,641,761	-				-1.8
4,641,761	-				-2.5
4,641,761	-				+0.2
4,641,769	+				+0.8
4,641,816	+				+0.8
4,641,817	-				-0.2
4,641,817	-				-0.4
4,641,817	-				-0.7
4,641,817	-				+0.5
4,641,817	-				+0.8
4,641,820	+				-1.5
4,641,820	+				-0.2
4,641,820	+				-2.4
4,641,820	+				-0.3
4,641,821	-				+0.3
4,641,821	-				+0.8
4,641,821	-				+0.1
4,641,821	-				+0.8
4,641,821	-				-0.0
4,641,824	+				-0.5
4,641,824	+				+2.4
4,641,824	+				-0.8
4,641,824	+				-0.8
4,641,825	-				-1.2
4,641,825	-				-0.8
4,641,825	-				+0.8
4,641,825	-				-0.7
4,641,825	-				+1.2
4,641,825	-				+0.4
4,641,825	-				+0.2
4,641,825	-				-1.4
4,641,842	-				-0.2
4,641,872	+				+0.2
4,641,872	+				-0.3
4,641,873	-				-0.8
4,641,938	+				-1.2
4,641,938	+				-1.5
4,641,938	+				-0.1
4,641,938	+				+2.2
4,641,939	-				+1.2
4,641,939	-				-0.2
4,641,939	-				+1.2
4,641,939	-				+0.8
4,641,939	-				-0.8
4,641,939	-				+0.8
4,641,939	-				+2.3
4,641,939	-				-1.2
4,641,939	-				-0.2
4,641,939	-				+1.7
4,641,939	-				+0.2
4,642,010	+		HGI48_RS20785	0.11	+0.8
4,642,011	-		HGI48_RS20785	0.11	+1.4
4,642,011	-		HGI48_RS20785	0.11	+0.1
4,642,011	-		HGI48_RS20785	0.11	+0.8
4,642,023	+		HGI48_RS20785	0.12	+0.7
4,642,024	-		HGI48_RS20785	0.13	-0.8
4,642,024	-		HGI48_RS20785	0.13	+1.1
4,642,024	-		HGI48_RS20785	0.13	-0.8
4,642,024	-		HGI48_RS20785	0.13	-0.2
4,642,024	-		HGI48_RS20785	0.13	-1.2
4,642,024	-		HGI48_RS20785	0.13	-0.4
4,642,080	-		HGI48_RS20785	0.21	+0.4
4,642,080	-		HGI48_RS20785	0.21	-0.0
4,642,152	-		HGI48_RS20785	0.32	-0.9
4,642,188	+		HGI48_RS20785	0.37	-2.2
4,642,189	-		HGI48_RS20785	0.37	+0.5
4,642,189	-		HGI48_RS20785	0.37	-0.6
4,642,189	-		HGI48_RS20785	0.37	+0.5
4,642,209	+		HGI48_RS20785	0.40	-0.6
4,642,209	+		HGI48_RS20785	0.40	+0.4
4,642,209	+				+0.8
4,642,209	+		HGI48_RS20785	0.40	+1.2
4,642,209	+		HGI48_RS20785	0.40	-0.8
4,642,209	+				-0.8
4,642,210	-		HGI48_RS20785	0.40	+0.4
4,642,210	-		HGI48_RS20785	0.40	+0.8
4,642,210	-		HGI48_RS20785	0.40	-0.2
4,642,210	-		HGI48_RS20785	0.40	+0.4
4,642,210	-		HGI48_RS20785	0.40	-0.2
4,642,210	-		HGI48_RS20785	0.40	-1.5
4,642,210	-		HGI48_RS20785	0.40	-1.8
4,642,210	-		HGI48_RS20785	0.40	-1.2
4,642,232	+		HGI48_RS20785	0.44	-1.2
4,642,268	+		HGI48_RS20785	0.49	-0.4
4,642,293	+		HGI48_RS20785	0.53	+0.3
4,642,531	-		HGI48_RS20785	0.88	-0.8
4,642,531	-		HGI48_RS20785	0.88	-0.5