Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20770 and HGI48_RS20775 are separated by 302 nucleotides HGI48_RS20775 and HGI48_RS20780 are separated by 44 nucleotides HGI48_RS20780 and HGI48_RS20785 are separated by 360 nucleotides
HGI48_RS20770: HGI48_RS20770 - DUF1820 family protein, at 4,640,033 to 4,640,356
_RS20770
HGI48_RS20775: HGI48_RS20775 - lysoplasmalogenase, at 4,640,659 to 4,641,288
_RS20775
HGI48_RS20780: HGI48_RS20780 - sulfurtransferase TusA, at 4,641,333 to 4,641,578
_RS20780
HGI48_RS20785: HGI48_RS20785 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 4,641,939 to 4,642,610
_RS20785
Position (kb)
4641
4642 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4640.340 kb on - strand at 4640.357 kb on + strand at 4640.395 kb on + strand at 4640.396 kb on - strand at 4640.424 kb on + strand at 4640.424 kb on + strand at 4640.424 kb on + strand at 4640.424 kb on + strand at 4640.425 kb on - strand at 4640.425 kb on - strand at 4640.425 kb on - strand at 4640.425 kb on - strand at 4640.512 kb on + strand at 4640.512 kb on + strand at 4640.512 kb on + strand at 4640.512 kb on + strand at 4640.512 kb on + strand at 4640.512 kb on + strand at 4640.512 kb on + strand at 4640.513 kb on - strand at 4640.513 kb on - strand at 4640.514 kb on + strand at 4640.514 kb on + strand at 4640.514 kb on + strand at 4640.515 kb on - strand at 4640.515 kb on - strand at 4640.515 kb on - strand at 4640.518 kb on + strand at 4640.518 kb on + strand at 4640.518 kb on + strand at 4640.519 kb on - strand at 4640.648 kb on - strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.658 kb on + strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.659 kb on - strand at 4640.701 kb on + strand at 4640.701 kb on + strand at 4640.702 kb on - strand at 4640.702 kb on - strand at 4640.702 kb on - strand at 4640.748 kb on + strand, within HGI48_RS20775 at 4640.816 kb on - strand, within HGI48_RS20775 at 4640.906 kb on - strand, within HGI48_RS20775 at 4640.926 kb on + strand, within HGI48_RS20775 at 4640.926 kb on + strand, within HGI48_RS20775 at 4640.926 kb on + strand, within HGI48_RS20775 at 4640.926 kb on + strand, within HGI48_RS20775 at 4640.926 kb on + strand, within HGI48_RS20775 at 4640.927 kb on - strand, within HGI48_RS20775 at 4640.927 kb on - strand at 4640.927 kb on - strand, within HGI48_RS20775 at 4640.994 kb on + strand, within HGI48_RS20775 at 4640.995 kb on - strand, within HGI48_RS20775 at 4641.020 kb on + strand, within HGI48_RS20775 at 4641.109 kb on + strand, within HGI48_RS20775 at 4641.109 kb on + strand, within HGI48_RS20775 at 4641.109 kb on + strand, within HGI48_RS20775 at 4641.110 kb on - strand, within HGI48_RS20775 at 4641.110 kb on - strand, within HGI48_RS20775 at 4641.110 kb on - strand, within HGI48_RS20775 at 4641.165 kb on - strand, within HGI48_RS20775 at 4641.244 kb on + strand at 4641.245 kb on - strand at 4641.280 kb on + strand at 4641.281 kb on - strand at 4641.281 kb on - strand at 4641.281 kb on - strand at 4641.281 kb on - strand at 4641.281 kb on - strand at 4641.282 kb on + strand at 4641.282 kb on + strand at 4641.282 kb on + strand at 4641.282 kb on + strand at 4641.282 kb on + strand at 4641.282 kb on + strand at 4641.283 kb on - strand at 4641.286 kb on + strand at 4641.286 kb on + strand at 4641.286 kb on + strand at 4641.405 kb on - strand, within HGI48_RS20780 at 4641.407 kb on - strand, within HGI48_RS20780 at 4641.497 kb on + strand, within HGI48_RS20780 at 4641.497 kb on + strand, within HGI48_RS20780 at 4641.498 kb on - strand, within HGI48_RS20780 at 4641.621 kb on + strand at 4641.621 kb on + strand at 4641.622 kb on - strand at 4641.626 kb on + strand at 4641.627 kb on - strand at 4641.667 kb on - strand at 4641.692 kb on - strand at 4641.758 kb on + strand at 4641.758 kb on + strand at 4641.758 kb on + strand at 4641.758 kb on + strand at 4641.758 kb on + strand at 4641.758 kb on + strand at 4641.758 kb on + strand at 4641.758 kb on + strand at 4641.759 kb on - strand at 4641.759 kb on - strand at 4641.759 kb on - strand at 4641.759 kb on - strand at 4641.759 kb on - strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.760 kb on + strand at 4641.761 kb on - strand at 4641.761 kb on - strand at 4641.761 kb on - strand at 4641.769 kb on + strand at 4641.816 kb on + strand at 4641.817 kb on - strand at 4641.817 kb on - strand at 4641.817 kb on - strand at 4641.817 kb on - strand at 4641.817 kb on - strand at 4641.820 kb on + strand at 4641.820 kb on + strand at 4641.820 kb on + strand at 4641.820 kb on + strand at 4641.821 kb on - strand at 4641.821 kb on - strand at 4641.821 kb on - strand at 4641.821 kb on - strand at 4641.821 kb on - strand at 4641.824 kb on + strand at 4641.824 kb on + strand at 4641.824 kb on + strand at 4641.824 kb on + strand at 4641.825 kb on - strand at 4641.825 kb on - strand at 4641.825 kb on - strand at 4641.825 kb on - strand at 4641.825 kb on - strand at 4641.825 kb on - strand at 4641.825 kb on - strand at 4641.825 kb on - strand at 4641.842 kb on - strand at 4641.872 kb on + strand at 4641.872 kb on + strand at 4641.873 kb on - strand at 4641.938 kb on + strand at 4641.938 kb on + strand at 4641.938 kb on + strand at 4641.938 kb on + strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4641.939 kb on - strand at 4642.010 kb on + strand, within HGI48_RS20785 at 4642.011 kb on - strand, within HGI48_RS20785 at 4642.011 kb on - strand, within HGI48_RS20785 at 4642.011 kb on - strand, within HGI48_RS20785 at 4642.023 kb on + strand, within HGI48_RS20785 at 4642.024 kb on - strand, within HGI48_RS20785 at 4642.024 kb on - strand, within HGI48_RS20785 at 4642.024 kb on - strand, within HGI48_RS20785 at 4642.024 kb on - strand, within HGI48_RS20785 at 4642.024 kb on - strand, within HGI48_RS20785 at 4642.024 kb on - strand, within HGI48_RS20785 at 4642.080 kb on - strand, within HGI48_RS20785 at 4642.080 kb on - strand, within HGI48_RS20785 at 4642.152 kb on - strand, within HGI48_RS20785 at 4642.188 kb on + strand, within HGI48_RS20785 at 4642.189 kb on - strand, within HGI48_RS20785 at 4642.189 kb on - strand, within HGI48_RS20785 at 4642.189 kb on - strand, within HGI48_RS20785 at 4642.209 kb on + strand, within HGI48_RS20785 at 4642.209 kb on + strand, within HGI48_RS20785 at 4642.209 kb on + strand at 4642.209 kb on + strand, within HGI48_RS20785 at 4642.209 kb on + strand, within HGI48_RS20785 at 4642.209 kb on + strand at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.210 kb on - strand, within HGI48_RS20785 at 4642.232 kb on + strand, within HGI48_RS20785 at 4642.268 kb on + strand, within HGI48_RS20785 at 4642.293 kb on + strand, within HGI48_RS20785 at 4642.531 kb on - strand, within HGI48_RS20785 at 4642.531 kb on - strand, within HGI48_RS20785
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,640,340 - +0.8 4,640,357 + -0.8 4,640,395 + +1.2 4,640,396 - +0.5 4,640,424 + +0.5 4,640,424 + -0.1 4,640,424 + +1.4 4,640,424 + +1.2 4,640,425 - +1.5 4,640,425 - +0.5 4,640,425 - +0.7 4,640,425 - +0.8 4,640,512 + +0.3 4,640,512 + -0.1 4,640,512 + +0.2 4,640,512 + +0.6 4,640,512 + -0.8 4,640,512 + +0.2 4,640,512 + +0.6 4,640,513 - +0.4 4,640,513 - +0.4 4,640,514 + +1.4 4,640,514 + -1.5 4,640,514 + -0.0 4,640,515 - -0.8 4,640,515 - +1.2 4,640,515 - -0.5 4,640,518 + +1.1 4,640,518 + +0.4 4,640,518 + -0.5 4,640,519 - +0.4 4,640,648 - +0.4 4,640,658 + -2.0 4,640,658 + +0.2 4,640,658 + -1.1 4,640,658 + +0.9 4,640,658 + -0.0 4,640,658 + +0.4 4,640,658 + +0.6 4,640,658 + -1.1 4,640,658 + +1.0 4,640,658 + +0.1 4,640,658 + +0.4 4,640,658 + -1.2 4,640,658 + -1.2 4,640,658 + -0.2 4,640,658 + +0.3 4,640,658 + -0.2 4,640,659 - -0.2 4,640,659 - -0.8 4,640,659 - +1.4 4,640,659 - +0.8 4,640,659 - +0.2 4,640,659 - -1.0 4,640,659 - -0.2 4,640,659 - -0.5 4,640,659 - +0.4 4,640,659 - -0.5 4,640,701 + -0.8 4,640,701 + +1.0 4,640,702 - -0.2 4,640,702 - +0.1 4,640,702 - -2.2 4,640,748 + HGI48_RS20775 0.14 +0.1 4,640,816 - HGI48_RS20775 0.25 +1.6 4,640,906 - HGI48_RS20775 0.39 +1.4 4,640,926 + HGI48_RS20775 0.42 +0.5 4,640,926 + HGI48_RS20775 0.42 -1.2 4,640,926 + HGI48_RS20775 0.42 -1.5 4,640,926 + HGI48_RS20775 0.42 +0.8 4,640,926 + HGI48_RS20775 0.42 -2.0 4,640,927 - HGI48_RS20775 0.43 +0.5 4,640,927 - +1.8 4,640,927 - HGI48_RS20775 0.43 +0.6 4,640,994 + HGI48_RS20775 0.53 +0.7 4,640,995 - HGI48_RS20775 0.53 -2.4 4,641,020 + HGI48_RS20775 0.57 +1.8 4,641,109 + HGI48_RS20775 0.71 -0.7 4,641,109 + HGI48_RS20775 0.71 +0.3 4,641,109 + HGI48_RS20775 0.71 +0.6 4,641,110 - HGI48_RS20775 0.72 +0.4 4,641,110 - HGI48_RS20775 0.72 +0.2 4,641,110 - HGI48_RS20775 0.72 -2.2 4,641,165 - HGI48_RS20775 0.80 +0.5 4,641,244 + -1.0 4,641,245 - -0.8 4,641,280 + -2.9 4,641,281 - -1.3 4,641,281 - -0.4 4,641,281 - -1.8 4,641,281 - -0.8 4,641,281 - -1.4 4,641,282 + +1.1 4,641,282 + +0.4 4,641,282 + -1.5 4,641,282 + +1.4 4,641,282 + -0.6 4,641,282 + +0.1 4,641,283 - +1.2 4,641,286 + -0.3 4,641,286 + +0.2 4,641,286 + +0.8 4,641,405 - HGI48_RS20780 0.29 -0.4 4,641,407 - HGI48_RS20780 0.30 -1.8 4,641,497 + HGI48_RS20780 0.67 +0.8 4,641,497 + HGI48_RS20780 0.67 -1.2 4,641,498 - HGI48_RS20780 0.67 -2.0 4,641,621 + -0.8 4,641,621 + -2.2 4,641,622 - +0.6 4,641,626 + -1.2 4,641,627 - -1.8 4,641,667 - -0.8 4,641,692 - +0.8 4,641,758 + -0.5 4,641,758 + +0.6 4,641,758 + -1.8 4,641,758 + -0.9 4,641,758 + +2.1 4,641,758 + +1.4 4,641,758 + -1.3 4,641,758 + +1.3 4,641,759 - -0.4 4,641,759 - -0.8 4,641,759 - -0.2 4,641,759 - +0.3 4,641,759 - -1.4 4,641,760 + -0.0 4,641,760 + -0.0 4,641,760 + -2.4 4,641,760 + +0.8 4,641,760 + -0.5 4,641,760 + -0.2 4,641,760 + +0.7 4,641,760 + -2.5 4,641,760 + -2.2 4,641,761 - -1.8 4,641,761 - -2.5 4,641,761 - +0.2 4,641,769 + +0.8 4,641,816 + +0.8 4,641,817 - -0.2 4,641,817 - -0.4 4,641,817 - -0.7 4,641,817 - +0.5 4,641,817 - +0.8 4,641,820 + -1.5 4,641,820 + -0.2 4,641,820 + -2.4 4,641,820 + -0.3 4,641,821 - +0.3 4,641,821 - +0.8 4,641,821 - +0.1 4,641,821 - +0.8 4,641,821 - -0.0 4,641,824 + -0.5 4,641,824 + +2.4 4,641,824 + -0.8 4,641,824 + -0.8 4,641,825 - -1.2 4,641,825 - -0.8 4,641,825 - +0.8 4,641,825 - -0.7 4,641,825 - +1.2 4,641,825 - +0.4 4,641,825 - +0.2 4,641,825 - -1.4 4,641,842 - -0.2 4,641,872 + +0.2 4,641,872 + -0.3 4,641,873 - -0.8 4,641,938 + -1.2 4,641,938 + -1.5 4,641,938 + -0.1 4,641,938 + +2.2 4,641,939 - +1.2 4,641,939 - -0.2 4,641,939 - +1.2 4,641,939 - +0.8 4,641,939 - -0.8 4,641,939 - +0.8 4,641,939 - +2.3 4,641,939 - -1.2 4,641,939 - -0.2 4,641,939 - +1.7 4,641,939 - +0.2 4,642,010 + HGI48_RS20785 0.11 +0.8 4,642,011 - HGI48_RS20785 0.11 +1.4 4,642,011 - HGI48_RS20785 0.11 +0.1 4,642,011 - HGI48_RS20785 0.11 +0.8 4,642,023 + HGI48_RS20785 0.12 +0.7 4,642,024 - HGI48_RS20785 0.13 -0.8 4,642,024 - HGI48_RS20785 0.13 +1.1 4,642,024 - HGI48_RS20785 0.13 -0.8 4,642,024 - HGI48_RS20785 0.13 -0.2 4,642,024 - HGI48_RS20785 0.13 -1.2 4,642,024 - HGI48_RS20785 0.13 -0.4 4,642,080 - HGI48_RS20785 0.21 +0.4 4,642,080 - HGI48_RS20785 0.21 -0.0 4,642,152 - HGI48_RS20785 0.32 -0.9 4,642,188 + HGI48_RS20785 0.37 -2.2 4,642,189 - HGI48_RS20785 0.37 +0.5 4,642,189 - HGI48_RS20785 0.37 -0.6 4,642,189 - HGI48_RS20785 0.37 +0.5 4,642,209 + HGI48_RS20785 0.40 -0.6 4,642,209 + HGI48_RS20785 0.40 +0.4 4,642,209 + +0.8 4,642,209 + HGI48_RS20785 0.40 +1.2 4,642,209 + HGI48_RS20785 0.40 -0.8 4,642,209 + -0.8 4,642,210 - HGI48_RS20785 0.40 +0.4 4,642,210 - HGI48_RS20785 0.40 +0.8 4,642,210 - HGI48_RS20785 0.40 -0.2 4,642,210 - HGI48_RS20785 0.40 +0.4 4,642,210 - HGI48_RS20785 0.40 -0.2 4,642,210 - HGI48_RS20785 0.40 -1.5 4,642,210 - HGI48_RS20785 0.40 -1.8 4,642,210 - HGI48_RS20785 0.40 -1.2 4,642,232 + HGI48_RS20785 0.44 -1.2 4,642,268 + HGI48_RS20785 0.49 -0.4 4,642,293 + HGI48_RS20785 0.53 +0.3 4,642,531 - HGI48_RS20785 0.88 -0.8 4,642,531 - HGI48_RS20785 0.88 -0.5
Or see this region's nucleotide sequence