Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20780

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS20770 and HGI48_RS20775 are separated by 302 nucleotidesHGI48_RS20775 and HGI48_RS20780 are separated by 44 nucleotidesHGI48_RS20780 and HGI48_RS20785 are separated by 360 nucleotides HGI48_RS20770: HGI48_RS20770 - DUF1820 family protein, at 4,640,033 to 4,640,356 _RS20770 HGI48_RS20775: HGI48_RS20775 - lysoplasmalogenase, at 4,640,659 to 4,641,288 _RS20775 HGI48_RS20780: HGI48_RS20780 - sulfurtransferase TusA, at 4,641,333 to 4,641,578 _RS20780 HGI48_RS20785: HGI48_RS20785 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 4,641,939 to 4,642,610 _RS20785 Position (kb) 4641 4642Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4640.340 kb on - strandat 4640.357 kb on + strandat 4640.395 kb on + strandat 4640.396 kb on - strandat 4640.424 kb on + strandat 4640.424 kb on + strandat 4640.424 kb on + strandat 4640.424 kb on + strandat 4640.425 kb on - strandat 4640.425 kb on - strandat 4640.425 kb on - strandat 4640.425 kb on - strandat 4640.512 kb on + strandat 4640.512 kb on + strandat 4640.512 kb on + strandat 4640.512 kb on + strandat 4640.512 kb on + strandat 4640.512 kb on + strandat 4640.512 kb on + strandat 4640.513 kb on - strandat 4640.513 kb on - strandat 4640.514 kb on + strandat 4640.514 kb on + strandat 4640.514 kb on + strandat 4640.515 kb on - strandat 4640.515 kb on - strandat 4640.515 kb on - strandat 4640.518 kb on + strandat 4640.518 kb on + strandat 4640.518 kb on + strandat 4640.519 kb on - strandat 4640.648 kb on - strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.658 kb on + strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.659 kb on - strandat 4640.701 kb on + strandat 4640.701 kb on + strandat 4640.702 kb on - strandat 4640.702 kb on - strandat 4640.702 kb on - strandat 4640.748 kb on + strand, within HGI48_RS20775at 4640.816 kb on - strand, within HGI48_RS20775at 4640.906 kb on - strand, within HGI48_RS20775at 4640.926 kb on + strand, within HGI48_RS20775at 4640.926 kb on + strand, within HGI48_RS20775at 4640.926 kb on + strand, within HGI48_RS20775at 4640.926 kb on + strand, within HGI48_RS20775at 4640.926 kb on + strand, within HGI48_RS20775at 4640.927 kb on - strand, within HGI48_RS20775at 4640.927 kb on - strandat 4640.927 kb on - strand, within HGI48_RS20775at 4640.994 kb on + strand, within HGI48_RS20775at 4640.995 kb on - strand, within HGI48_RS20775at 4641.020 kb on + strand, within HGI48_RS20775at 4641.109 kb on + strand, within HGI48_RS20775at 4641.109 kb on + strand, within HGI48_RS20775at 4641.109 kb on + strand, within HGI48_RS20775at 4641.110 kb on - strand, within HGI48_RS20775at 4641.110 kb on - strand, within HGI48_RS20775at 4641.110 kb on - strand, within HGI48_RS20775at 4641.165 kb on - strand, within HGI48_RS20775at 4641.244 kb on + strandat 4641.245 kb on - strandat 4641.280 kb on + strandat 4641.281 kb on - strandat 4641.281 kb on - strandat 4641.281 kb on - strandat 4641.281 kb on - strandat 4641.281 kb on - strandat 4641.282 kb on + strandat 4641.282 kb on + strandat 4641.282 kb on + strandat 4641.282 kb on + strandat 4641.282 kb on + strandat 4641.282 kb on + strandat 4641.283 kb on - strandat 4641.286 kb on + strandat 4641.286 kb on + strandat 4641.286 kb on + strandat 4641.405 kb on - strand, within HGI48_RS20780at 4641.407 kb on - strand, within HGI48_RS20780at 4641.497 kb on + strand, within HGI48_RS20780at 4641.497 kb on + strand, within HGI48_RS20780at 4641.498 kb on - strand, within HGI48_RS20780at 4641.621 kb on + strandat 4641.621 kb on + strandat 4641.622 kb on - strandat 4641.626 kb on + strandat 4641.627 kb on - strandat 4641.667 kb on - strandat 4641.692 kb on - strandat 4641.758 kb on + strandat 4641.758 kb on + strandat 4641.758 kb on + strandat 4641.758 kb on + strandat 4641.758 kb on + strandat 4641.758 kb on + strandat 4641.758 kb on + strandat 4641.758 kb on + strandat 4641.759 kb on - strandat 4641.759 kb on - strandat 4641.759 kb on - strandat 4641.759 kb on - strandat 4641.759 kb on - strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.760 kb on + strandat 4641.761 kb on - strandat 4641.761 kb on - strandat 4641.761 kb on - strandat 4641.769 kb on + strandat 4641.816 kb on + strandat 4641.817 kb on - strandat 4641.817 kb on - strandat 4641.817 kb on - strandat 4641.817 kb on - strandat 4641.817 kb on - strandat 4641.820 kb on + strandat 4641.820 kb on + strandat 4641.820 kb on + strandat 4641.820 kb on + strandat 4641.821 kb on - strandat 4641.821 kb on - strandat 4641.821 kb on - strandat 4641.821 kb on - strandat 4641.821 kb on - strandat 4641.824 kb on + strandat 4641.824 kb on + strandat 4641.824 kb on + strandat 4641.824 kb on + strandat 4641.825 kb on - strandat 4641.825 kb on - strandat 4641.825 kb on - strandat 4641.825 kb on - strandat 4641.825 kb on - strandat 4641.825 kb on - strandat 4641.825 kb on - strandat 4641.825 kb on - strandat 4641.842 kb on - strandat 4641.872 kb on + strandat 4641.872 kb on + strandat 4641.873 kb on - strandat 4641.938 kb on + strandat 4641.938 kb on + strandat 4641.938 kb on + strandat 4641.938 kb on + strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4641.939 kb on - strandat 4642.010 kb on + strand, within HGI48_RS20785at 4642.011 kb on - strand, within HGI48_RS20785at 4642.011 kb on - strand, within HGI48_RS20785at 4642.011 kb on - strand, within HGI48_RS20785at 4642.023 kb on + strand, within HGI48_RS20785at 4642.024 kb on - strand, within HGI48_RS20785at 4642.024 kb on - strand, within HGI48_RS20785at 4642.024 kb on - strand, within HGI48_RS20785at 4642.024 kb on - strand, within HGI48_RS20785at 4642.024 kb on - strand, within HGI48_RS20785at 4642.024 kb on - strand, within HGI48_RS20785at 4642.080 kb on - strand, within HGI48_RS20785at 4642.080 kb on - strand, within HGI48_RS20785at 4642.152 kb on - strand, within HGI48_RS20785at 4642.188 kb on + strand, within HGI48_RS20785at 4642.189 kb on - strand, within HGI48_RS20785at 4642.189 kb on - strand, within HGI48_RS20785at 4642.189 kb on - strand, within HGI48_RS20785at 4642.209 kb on + strand, within HGI48_RS20785at 4642.209 kb on + strand, within HGI48_RS20785at 4642.209 kb on + strandat 4642.209 kb on + strand, within HGI48_RS20785at 4642.209 kb on + strand, within HGI48_RS20785at 4642.209 kb on + strandat 4642.210 kb on - strand, within HGI48_RS20785at 4642.210 kb on - strand, within HGI48_RS20785at 4642.210 kb on - strand, within HGI48_RS20785at 4642.210 kb on - strand, within HGI48_RS20785at 4642.210 kb on - strand, within HGI48_RS20785at 4642.210 kb on - strand, within HGI48_RS20785at 4642.210 kb on - strand, within HGI48_RS20785at 4642.210 kb on - strand, within HGI48_RS20785at 4642.232 kb on + strand, within HGI48_RS20785at 4642.268 kb on + strand, within HGI48_RS20785at 4642.293 kb on + strand, within HGI48_RS20785at 4642.531 kb on - strand, within HGI48_RS20785at 4642.531 kb on - strand, within HGI48_RS20785

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,640,340 - +0.8
4,640,357 + -0.8
4,640,395 + +1.2
4,640,396 - +0.5
4,640,424 + +0.5
4,640,424 + -0.1
4,640,424 + +1.4
4,640,424 + +1.2
4,640,425 - +1.5
4,640,425 - +0.5
4,640,425 - +0.7
4,640,425 - +0.8
4,640,512 + +0.3
4,640,512 + -0.1
4,640,512 + +0.2
4,640,512 + +0.6
4,640,512 + -0.8
4,640,512 + +0.2
4,640,512 + +0.6
4,640,513 - +0.4
4,640,513 - +0.4
4,640,514 + +1.4
4,640,514 + -1.5
4,640,514 + -0.0
4,640,515 - -0.8
4,640,515 - +1.2
4,640,515 - -0.5
4,640,518 + +1.1
4,640,518 + +0.4
4,640,518 + -0.5
4,640,519 - +0.4
4,640,648 - +0.4
4,640,658 + -2.0
4,640,658 + +0.2
4,640,658 + -1.1
4,640,658 + +0.9
4,640,658 + -0.0
4,640,658 + +0.4
4,640,658 + +0.6
4,640,658 + -1.1
4,640,658 + +1.0
4,640,658 + +0.1
4,640,658 + +0.4
4,640,658 + -1.2
4,640,658 + -1.2
4,640,658 + -0.2
4,640,658 + +0.3
4,640,658 + -0.2
4,640,659 - -0.2
4,640,659 - -0.8
4,640,659 - +1.4
4,640,659 - +0.8
4,640,659 - +0.2
4,640,659 - -1.0
4,640,659 - -0.2
4,640,659 - -0.5
4,640,659 - +0.4
4,640,659 - -0.5
4,640,701 + -0.8
4,640,701 + +1.0
4,640,702 - -0.2
4,640,702 - +0.1
4,640,702 - -2.2
4,640,748 + HGI48_RS20775 0.14 +0.1
4,640,816 - HGI48_RS20775 0.25 +1.6
4,640,906 - HGI48_RS20775 0.39 +1.4
4,640,926 + HGI48_RS20775 0.42 +0.5
4,640,926 + HGI48_RS20775 0.42 -1.2
4,640,926 + HGI48_RS20775 0.42 -1.5
4,640,926 + HGI48_RS20775 0.42 +0.8
4,640,926 + HGI48_RS20775 0.42 -2.0
4,640,927 - HGI48_RS20775 0.43 +0.5
4,640,927 - +1.8
4,640,927 - HGI48_RS20775 0.43 +0.6
4,640,994 + HGI48_RS20775 0.53 +0.7
4,640,995 - HGI48_RS20775 0.53 -2.4
4,641,020 + HGI48_RS20775 0.57 +1.8
4,641,109 + HGI48_RS20775 0.71 -0.7
4,641,109 + HGI48_RS20775 0.71 +0.3
4,641,109 + HGI48_RS20775 0.71 +0.6
4,641,110 - HGI48_RS20775 0.72 +0.4
4,641,110 - HGI48_RS20775 0.72 +0.2
4,641,110 - HGI48_RS20775 0.72 -2.2
4,641,165 - HGI48_RS20775 0.80 +0.5
4,641,244 + -1.0
4,641,245 - -0.8
4,641,280 + -2.9
4,641,281 - -1.3
4,641,281 - -0.4
4,641,281 - -1.8
4,641,281 - -0.8
4,641,281 - -1.4
4,641,282 + +1.1
4,641,282 + +0.4
4,641,282 + -1.5
4,641,282 + +1.4
4,641,282 + -0.6
4,641,282 + +0.1
4,641,283 - +1.2
4,641,286 + -0.3
4,641,286 + +0.2
4,641,286 + +0.8
4,641,405 - HGI48_RS20780 0.29 -0.4
4,641,407 - HGI48_RS20780 0.30 -1.8
4,641,497 + HGI48_RS20780 0.67 +0.8
4,641,497 + HGI48_RS20780 0.67 -1.2
4,641,498 - HGI48_RS20780 0.67 -2.0
4,641,621 + -0.8
4,641,621 + -2.2
4,641,622 - +0.6
4,641,626 + -1.2
4,641,627 - -1.8
4,641,667 - -0.8
4,641,692 - +0.8
4,641,758 + -0.5
4,641,758 + +0.6
4,641,758 + -1.8
4,641,758 + -0.9
4,641,758 + +2.1
4,641,758 + +1.4
4,641,758 + -1.3
4,641,758 + +1.3
4,641,759 - -0.4
4,641,759 - -0.8
4,641,759 - -0.2
4,641,759 - +0.3
4,641,759 - -1.4
4,641,760 + -0.0
4,641,760 + -0.0
4,641,760 + -2.4
4,641,760 + +0.8
4,641,760 + -0.5
4,641,760 + -0.2
4,641,760 + +0.7
4,641,760 + -2.5
4,641,760 + -2.2
4,641,761 - -1.8
4,641,761 - -2.5
4,641,761 - +0.2
4,641,769 + +0.8
4,641,816 + +0.8
4,641,817 - -0.2
4,641,817 - -0.4
4,641,817 - -0.7
4,641,817 - +0.5
4,641,817 - +0.8
4,641,820 + -1.5
4,641,820 + -0.2
4,641,820 + -2.4
4,641,820 + -0.3
4,641,821 - +0.3
4,641,821 - +0.8
4,641,821 - +0.1
4,641,821 - +0.8
4,641,821 - -0.0
4,641,824 + -0.5
4,641,824 + +2.4
4,641,824 + -0.8
4,641,824 + -0.8
4,641,825 - -1.2
4,641,825 - -0.8
4,641,825 - +0.8
4,641,825 - -0.7
4,641,825 - +1.2
4,641,825 - +0.4
4,641,825 - +0.2
4,641,825 - -1.4
4,641,842 - -0.2
4,641,872 + +0.2
4,641,872 + -0.3
4,641,873 - -0.8
4,641,938 + -1.2
4,641,938 + -1.5
4,641,938 + -0.1
4,641,938 + +2.2
4,641,939 - +1.2
4,641,939 - -0.2
4,641,939 - +1.2
4,641,939 - +0.8
4,641,939 - -0.8
4,641,939 - +0.8
4,641,939 - +2.3
4,641,939 - -1.2
4,641,939 - -0.2
4,641,939 - +1.7
4,641,939 - +0.2
4,642,010 + HGI48_RS20785 0.11 +0.8
4,642,011 - HGI48_RS20785 0.11 +1.4
4,642,011 - HGI48_RS20785 0.11 +0.1
4,642,011 - HGI48_RS20785 0.11 +0.8
4,642,023 + HGI48_RS20785 0.12 +0.7
4,642,024 - HGI48_RS20785 0.13 -0.8
4,642,024 - HGI48_RS20785 0.13 +1.1
4,642,024 - HGI48_RS20785 0.13 -0.8
4,642,024 - HGI48_RS20785 0.13 -0.2
4,642,024 - HGI48_RS20785 0.13 -1.2
4,642,024 - HGI48_RS20785 0.13 -0.4
4,642,080 - HGI48_RS20785 0.21 +0.4
4,642,080 - HGI48_RS20785 0.21 -0.0
4,642,152 - HGI48_RS20785 0.32 -0.9
4,642,188 + HGI48_RS20785 0.37 -2.2
4,642,189 - HGI48_RS20785 0.37 +0.5
4,642,189 - HGI48_RS20785 0.37 -0.6
4,642,189 - HGI48_RS20785 0.37 +0.5
4,642,209 + HGI48_RS20785 0.40 -0.6
4,642,209 + HGI48_RS20785 0.40 +0.4
4,642,209 + +0.8
4,642,209 + HGI48_RS20785 0.40 +1.2
4,642,209 + HGI48_RS20785 0.40 -0.8
4,642,209 + -0.8
4,642,210 - HGI48_RS20785 0.40 +0.4
4,642,210 - HGI48_RS20785 0.40 +0.8
4,642,210 - HGI48_RS20785 0.40 -0.2
4,642,210 - HGI48_RS20785 0.40 +0.4
4,642,210 - HGI48_RS20785 0.40 -0.2
4,642,210 - HGI48_RS20785 0.40 -1.5
4,642,210 - HGI48_RS20785 0.40 -1.8
4,642,210 - HGI48_RS20785 0.40 -1.2
4,642,232 + HGI48_RS20785 0.44 -1.2
4,642,268 + HGI48_RS20785 0.49 -0.4
4,642,293 + HGI48_RS20785 0.53 +0.3
4,642,531 - HGI48_RS20785 0.88 -0.8
4,642,531 - HGI48_RS20785 0.88 -0.5

Or see this region's nucleotide sequence