Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20590 and HGI48_RS20595 are separated by 200 nucleotides HGI48_RS20595 and HGI48_RS20600 are separated by 16 nucleotides
HGI48_RS20590: HGI48_RS20590 - cell-envelope stress modulator CpxP, at 4,599,858 to 4,600,436
_RS20590
HGI48_RS20595: HGI48_RS20595 - envelope stress response regulator transcription factor CpxR, at 4,600,637 to 4,601,335
_RS20595
HGI48_RS20600: HGI48_RS20600 - envelope stress sensor histidine kinase CpxA, at 4,601,352 to 4,602,722
_RS20600
Position (kb)
4600
4601
4602 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4599.681 kb on + strand at 4599.681 kb on + strand at 4599.682 kb on - strand at 4599.682 kb on - strand at 4599.754 kb on - strand at 4599.772 kb on + strand at 4599.772 kb on + strand at 4599.773 kb on - strand at 4599.773 kb on - strand at 4599.773 kb on - strand at 4599.773 kb on - strand at 4599.780 kb on + strand at 4599.780 kb on + strand at 4599.780 kb on + strand at 4599.781 kb on - strand at 4599.787 kb on + strand at 4599.787 kb on + strand at 4599.787 kb on + strand at 4599.787 kb on + strand at 4599.787 kb on + strand at 4599.788 kb on - strand at 4599.788 kb on - strand at 4599.799 kb on + strand at 4599.799 kb on + strand at 4599.800 kb on - strand at 4599.809 kb on - strand at 4599.828 kb on - strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.837 kb on + strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.838 kb on - strand at 4599.844 kb on - strand at 4599.850 kb on + strand at 4599.853 kb on + strand at 4599.853 kb on + strand at 4599.853 kb on + strand at 4599.853 kb on + strand at 4599.854 kb on - strand at 4599.859 kb on + strand at 4599.859 kb on + strand at 4599.860 kb on - strand at 4599.869 kb on + strand at 4599.908 kb on + strand at 4600.006 kb on + strand, within HGI48_RS20590 at 4600.006 kb on + strand, within HGI48_RS20590 at 4600.006 kb on + strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.007 kb on - strand, within HGI48_RS20590 at 4600.029 kb on + strand, within HGI48_RS20590 at 4600.029 kb on + strand, within HGI48_RS20590 at 4600.030 kb on - strand, within HGI48_RS20590 at 4600.030 kb on - strand, within HGI48_RS20590 at 4600.030 kb on - strand, within HGI48_RS20590 at 4600.030 kb on - strand, within HGI48_RS20590 at 4600.030 kb on - strand at 4600.036 kb on - strand, within HGI48_RS20590 at 4600.150 kb on + strand at 4600.151 kb on - strand, within HGI48_RS20590 at 4600.151 kb on - strand at 4600.317 kb on + strand, within HGI48_RS20590 at 4600.413 kb on + strand at 4600.453 kb on + strand at 4600.453 kb on + strand at 4600.454 kb on - strand at 4600.454 kb on - strand at 4600.454 kb on - strand at 4600.454 kb on - strand at 4600.461 kb on + strand at 4600.461 kb on + strand at 4600.461 kb on + strand at 4600.462 kb on - strand at 4600.462 kb on - strand at 4600.466 kb on + strand at 4600.466 kb on + strand at 4600.466 kb on + strand at 4600.466 kb on + strand at 4600.467 kb on - strand at 4600.467 kb on - strand at 4600.467 kb on - strand at 4600.474 kb on + strand at 4600.475 kb on - strand at 4600.475 kb on - strand at 4600.505 kb on + strand at 4600.506 kb on - strand at 4600.506 kb on - strand at 4600.529 kb on + strand at 4600.529 kb on + strand at 4600.529 kb on + strand at 4600.529 kb on + strand at 4600.530 kb on - strand at 4600.530 kb on - strand at 4600.535 kb on + strand at 4600.536 kb on - strand at 4600.536 kb on - strand at 4600.570 kb on - strand at 4600.576 kb on - strand at 4600.579 kb on + strand at 4600.603 kb on + strand at 4600.604 kb on - strand at 4600.604 kb on - strand at 4600.604 kb on - strand at 4600.604 kb on - strand at 4600.604 kb on - strand at 4600.610 kb on + strand at 4600.631 kb on + strand at 4600.750 kb on - strand, within HGI48_RS20595 at 4600.780 kb on - strand at 4600.789 kb on + strand, within HGI48_RS20595 at 4600.925 kb on + strand, within HGI48_RS20595 at 4601.133 kb on - strand, within HGI48_RS20595 at 4601.236 kb on + strand at 4601.236 kb on + strand, within HGI48_RS20595 at 4601.236 kb on + strand, within HGI48_RS20595 at 4601.236 kb on + strand, within HGI48_RS20595 at 4601.236 kb on + strand, within HGI48_RS20595 at 4601.236 kb on + strand, within HGI48_RS20595 at 4601.236 kb on + strand, within HGI48_RS20595 at 4601.236 kb on + strand at 4601.236 kb on + strand, within HGI48_RS20595 at 4601.237 kb on - strand, within HGI48_RS20595 at 4601.237 kb on - strand, within HGI48_RS20595 at 4601.237 kb on - strand, within HGI48_RS20595 at 4601.237 kb on - strand, within HGI48_RS20595 at 4601.237 kb on - strand at 4601.237 kb on - strand at 4601.237 kb on - strand, within HGI48_RS20595 at 4601.237 kb on - strand at 4601.237 kb on - strand, within HGI48_RS20595 at 4601.290 kb on + strand at 4601.290 kb on + strand at 4601.312 kb on + strand at 4601.313 kb on - strand at 4601.351 kb on + strand at 4601.351 kb on + strand at 4601.351 kb on + strand at 4601.351 kb on + strand at 4601.351 kb on + strand at 4601.351 kb on + strand at 4601.352 kb on - strand at 4601.546 kb on - strand, within HGI48_RS20600 at 4601.548 kb on + strand, within HGI48_RS20600 at 4601.549 kb on - strand, within HGI48_RS20600 at 4601.734 kb on + strand, within HGI48_RS20600 at 4601.735 kb on - strand, within HGI48_RS20600 at 4601.772 kb on + strand, within HGI48_RS20600 at 4601.772 kb on + strand, within HGI48_RS20600 at 4601.781 kb on + strand, within HGI48_RS20600 at 4601.781 kb on + strand, within HGI48_RS20600 at 4601.781 kb on + strand at 4601.782 kb on - strand, within HGI48_RS20600 at 4601.782 kb on - strand, within HGI48_RS20600 at 4601.782 kb on - strand, within HGI48_RS20600 at 4601.782 kb on - strand, within HGI48_RS20600 at 4601.820 kb on - strand, within HGI48_RS20600 at 4602.252 kb on + strand at 4602.252 kb on + strand, within HGI48_RS20600 at 4602.253 kb on - strand, within HGI48_RS20600 at 4602.253 kb on - strand, within HGI48_RS20600
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,599,681 + +0.8 4,599,681 + +1.1 4,599,682 - -0.3 4,599,682 - -1.2 4,599,754 - -0.1 4,599,772 + -1.5 4,599,772 + -2.0 4,599,773 - -0.8 4,599,773 - -0.9 4,599,773 - -0.2 4,599,773 - +0.1 4,599,780 + -1.2 4,599,780 + -0.1 4,599,780 + -0.8 4,599,781 - -0.6 4,599,787 + +0.2 4,599,787 + -0.7 4,599,787 + -1.4 4,599,787 + -2.4 4,599,787 + -1.0 4,599,788 - -2.7 4,599,788 - +0.1 4,599,799 + -2.5 4,599,799 + -1.2 4,599,800 - -0.2 4,599,809 - -0.2 4,599,828 - -0.5 4,599,837 + +0.8 4,599,837 + -1.6 4,599,837 + -1.2 4,599,837 + +0.8 4,599,837 + +1.3 4,599,837 + -0.2 4,599,837 + -1.1 4,599,837 + -1.8 4,599,837 + -1.5 4,599,838 - -1.8 4,599,838 - -0.5 4,599,838 - -0.5 4,599,838 - +0.5 4,599,838 - -0.8 4,599,838 - +0.4 4,599,838 - -0.4 4,599,838 - +1.2 4,599,838 - -0.7 4,599,838 - -1.2 4,599,838 - -0.2 4,599,844 - -1.1 4,599,850 + -2.0 4,599,853 + -1.2 4,599,853 + -1.5 4,599,853 + -0.8 4,599,853 + -1.3 4,599,854 - -0.7 4,599,859 + -2.4 4,599,859 + -0.8 4,599,860 - -1.4 4,599,869 + +0.5 4,599,908 + -2.6 4,600,006 + HGI48_RS20590 0.26 +0.8 4,600,006 + HGI48_RS20590 0.26 -2.0 4,600,006 + HGI48_RS20590 0.26 +0.5 4,600,007 - HGI48_RS20590 0.26 +0.4 4,600,007 - HGI48_RS20590 0.26 +0.5 4,600,007 - HGI48_RS20590 0.26 +0.4 4,600,007 - HGI48_RS20590 0.26 -0.2 4,600,007 - HGI48_RS20590 0.26 +0.6 4,600,007 - HGI48_RS20590 0.26 -1.9 4,600,007 - HGI48_RS20590 0.26 +2.3 4,600,007 - HGI48_RS20590 0.26 +0.9 4,600,029 + HGI48_RS20590 0.30 -1.5 4,600,029 + HGI48_RS20590 0.30 -2.3 4,600,030 - HGI48_RS20590 0.30 +0.2 4,600,030 - HGI48_RS20590 0.30 -2.2 4,600,030 - HGI48_RS20590 0.30 -1.7 4,600,030 - HGI48_RS20590 0.30 -0.3 4,600,030 - +2.6 4,600,036 - HGI48_RS20590 0.31 +0.1 4,600,150 + +0.2 4,600,151 - HGI48_RS20590 0.51 +0.1 4,600,151 - +1.2 4,600,317 + HGI48_RS20590 0.79 -0.2 4,600,413 + +1.0 4,600,453 + -0.5 4,600,453 + -0.4 4,600,454 - +0.8 4,600,454 - +0.8 4,600,454 - -0.8 4,600,454 - +1.8 4,600,461 + -1.1 4,600,461 + -0.8 4,600,461 + +1.5 4,600,462 - +0.4 4,600,462 - -1.8 4,600,466 + -0.6 4,600,466 + -0.2 4,600,466 + -0.8 4,600,466 + +0.0 4,600,467 - +0.7 4,600,467 - -1.8 4,600,467 - -0.2 4,600,474 + -1.5 4,600,475 - -0.1 4,600,475 - +0.0 4,600,505 + -0.8 4,600,506 - -1.2 4,600,506 - -2.2 4,600,529 + -2.4 4,600,529 + -1.1 4,600,529 + -1.5 4,600,529 + -1.2 4,600,530 - +0.8 4,600,530 - -0.5 4,600,535 + +1.4 4,600,536 - -1.5 4,600,536 - -0.7 4,600,570 - +0.6 4,600,576 - +0.2 4,600,579 + +0.3 4,600,603 + -2.5 4,600,604 - -2.2 4,600,604 - -2.5 4,600,604 - -1.5 4,600,604 - -0.8 4,600,604 - -1.2 4,600,610 + +1.2 4,600,631 + -2.4 4,600,750 - HGI48_RS20595 0.16 +1.4 4,600,780 - -0.8 4,600,789 + HGI48_RS20595 0.22 -0.9 4,600,925 + HGI48_RS20595 0.41 -1.5 4,601,133 - HGI48_RS20595 0.71 -1.1 4,601,236 + -0.8 4,601,236 + HGI48_RS20595 0.86 -2.2 4,601,236 + HGI48_RS20595 0.86 -1.5 4,601,236 + HGI48_RS20595 0.86 -0.1 4,601,236 + HGI48_RS20595 0.86 -0.5 4,601,236 + HGI48_RS20595 0.86 -4.6 4,601,236 + HGI48_RS20595 0.86 -1.8 4,601,236 + +0.2 4,601,236 + HGI48_RS20595 0.86 -1.5 4,601,237 - HGI48_RS20595 0.86 +0.5 4,601,237 - HGI48_RS20595 0.86 -2.9 4,601,237 - HGI48_RS20595 0.86 -3.4 4,601,237 - HGI48_RS20595 0.86 +0.0 4,601,237 - +3.0 4,601,237 - -0.8 4,601,237 - HGI48_RS20595 0.86 -3.3 4,601,237 - +0.8 4,601,237 - HGI48_RS20595 0.86 -1.2 4,601,290 + +0.7 4,601,290 + -1.5 4,601,312 + -1.2 4,601,313 - +0.2 4,601,351 + -1.8 4,601,351 + -1.1 4,601,351 + -0.8 4,601,351 + +1.5 4,601,351 + +0.2 4,601,351 + -0.0 4,601,352 - +1.5 4,601,546 - HGI48_RS20600 0.14 -1.0 4,601,548 + HGI48_RS20600 0.14 -0.6 4,601,549 - HGI48_RS20600 0.14 +1.3 4,601,734 + HGI48_RS20600 0.28 -1.5 4,601,735 - HGI48_RS20600 0.28 -1.2 4,601,772 + HGI48_RS20600 0.31 -1.7 4,601,772 + HGI48_RS20600 0.31 -0.3 4,601,781 + HGI48_RS20600 0.31 +0.7 4,601,781 + HGI48_RS20600 0.31 -1.2 4,601,781 + -0.8 4,601,782 - HGI48_RS20600 0.31 +0.1 4,601,782 - HGI48_RS20600 0.31 +0.7 4,601,782 - HGI48_RS20600 0.31 -1.5 4,601,782 - HGI48_RS20600 0.31 +0.8 4,601,820 - HGI48_RS20600 0.34 -0.5 4,602,252 + +0.8 4,602,252 + HGI48_RS20600 0.66 +1.4 4,602,253 - HGI48_RS20600 0.66 +0.3 4,602,253 - HGI48_RS20600 0.66 +0.0
Or see this region's nucleotide sequence