Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20595

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS20590 and HGI48_RS20595 are separated by 200 nucleotidesHGI48_RS20595 and HGI48_RS20600 are separated by 16 nucleotides HGI48_RS20590: HGI48_RS20590 - cell-envelope stress modulator CpxP, at 4,599,858 to 4,600,436 _RS20590 HGI48_RS20595: HGI48_RS20595 - envelope stress response regulator transcription factor CpxR, at 4,600,637 to 4,601,335 _RS20595 HGI48_RS20600: HGI48_RS20600 - envelope stress sensor histidine kinase CpxA, at 4,601,352 to 4,602,722 _RS20600 Position (kb) 4600 4601 4602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4599.681 kb on + strandat 4599.681 kb on + strandat 4599.682 kb on - strandat 4599.682 kb on - strandat 4599.754 kb on - strandat 4599.772 kb on + strandat 4599.772 kb on + strandat 4599.773 kb on - strandat 4599.773 kb on - strandat 4599.773 kb on - strandat 4599.773 kb on - strandat 4599.780 kb on + strandat 4599.780 kb on + strandat 4599.780 kb on + strandat 4599.781 kb on - strandat 4599.787 kb on + strandat 4599.787 kb on + strandat 4599.787 kb on + strandat 4599.787 kb on + strandat 4599.787 kb on + strandat 4599.788 kb on - strandat 4599.788 kb on - strandat 4599.799 kb on + strandat 4599.799 kb on + strandat 4599.800 kb on - strandat 4599.809 kb on - strandat 4599.828 kb on - strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.837 kb on + strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.838 kb on - strandat 4599.844 kb on - strandat 4599.850 kb on + strandat 4599.853 kb on + strandat 4599.853 kb on + strandat 4599.853 kb on + strandat 4599.853 kb on + strandat 4599.854 kb on - strandat 4599.859 kb on + strandat 4599.859 kb on + strandat 4599.860 kb on - strandat 4599.869 kb on + strandat 4599.908 kb on + strandat 4600.006 kb on + strand, within HGI48_RS20590at 4600.006 kb on + strand, within HGI48_RS20590at 4600.006 kb on + strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.007 kb on - strand, within HGI48_RS20590at 4600.029 kb on + strand, within HGI48_RS20590at 4600.029 kb on + strand, within HGI48_RS20590at 4600.030 kb on - strand, within HGI48_RS20590at 4600.030 kb on - strand, within HGI48_RS20590at 4600.030 kb on - strand, within HGI48_RS20590at 4600.030 kb on - strand, within HGI48_RS20590at 4600.030 kb on - strandat 4600.036 kb on - strand, within HGI48_RS20590at 4600.150 kb on + strandat 4600.151 kb on - strand, within HGI48_RS20590at 4600.151 kb on - strandat 4600.317 kb on + strand, within HGI48_RS20590at 4600.413 kb on + strandat 4600.453 kb on + strandat 4600.453 kb on + strandat 4600.454 kb on - strandat 4600.454 kb on - strandat 4600.454 kb on - strandat 4600.454 kb on - strandat 4600.461 kb on + strandat 4600.461 kb on + strandat 4600.461 kb on + strandat 4600.462 kb on - strandat 4600.462 kb on - strandat 4600.466 kb on + strandat 4600.466 kb on + strandat 4600.466 kb on + strandat 4600.466 kb on + strandat 4600.467 kb on - strandat 4600.467 kb on - strandat 4600.467 kb on - strandat 4600.474 kb on + strandat 4600.475 kb on - strandat 4600.475 kb on - strandat 4600.505 kb on + strandat 4600.506 kb on - strandat 4600.506 kb on - strandat 4600.529 kb on + strandat 4600.529 kb on + strandat 4600.529 kb on + strandat 4600.529 kb on + strandat 4600.530 kb on - strandat 4600.530 kb on - strandat 4600.535 kb on + strandat 4600.536 kb on - strandat 4600.536 kb on - strandat 4600.570 kb on - strandat 4600.576 kb on - strandat 4600.579 kb on + strandat 4600.603 kb on + strandat 4600.604 kb on - strandat 4600.604 kb on - strandat 4600.604 kb on - strandat 4600.604 kb on - strandat 4600.604 kb on - strandat 4600.610 kb on + strandat 4600.631 kb on + strandat 4600.750 kb on - strand, within HGI48_RS20595at 4600.780 kb on - strandat 4600.789 kb on + strand, within HGI48_RS20595at 4600.925 kb on + strand, within HGI48_RS20595at 4601.133 kb on - strand, within HGI48_RS20595at 4601.236 kb on + strandat 4601.236 kb on + strand, within HGI48_RS20595at 4601.236 kb on + strand, within HGI48_RS20595at 4601.236 kb on + strand, within HGI48_RS20595at 4601.236 kb on + strand, within HGI48_RS20595at 4601.236 kb on + strand, within HGI48_RS20595at 4601.236 kb on + strand, within HGI48_RS20595at 4601.236 kb on + strandat 4601.236 kb on + strand, within HGI48_RS20595at 4601.237 kb on - strand, within HGI48_RS20595at 4601.237 kb on - strand, within HGI48_RS20595at 4601.237 kb on - strand, within HGI48_RS20595at 4601.237 kb on - strand, within HGI48_RS20595at 4601.237 kb on - strandat 4601.237 kb on - strandat 4601.237 kb on - strand, within HGI48_RS20595at 4601.237 kb on - strandat 4601.237 kb on - strand, within HGI48_RS20595at 4601.290 kb on + strandat 4601.290 kb on + strandat 4601.312 kb on + strandat 4601.313 kb on - strandat 4601.351 kb on + strandat 4601.351 kb on + strandat 4601.351 kb on + strandat 4601.351 kb on + strandat 4601.351 kb on + strandat 4601.351 kb on + strandat 4601.352 kb on - strandat 4601.546 kb on - strand, within HGI48_RS20600at 4601.548 kb on + strand, within HGI48_RS20600at 4601.549 kb on - strand, within HGI48_RS20600at 4601.734 kb on + strand, within HGI48_RS20600at 4601.735 kb on - strand, within HGI48_RS20600at 4601.772 kb on + strand, within HGI48_RS20600at 4601.772 kb on + strand, within HGI48_RS20600at 4601.781 kb on + strand, within HGI48_RS20600at 4601.781 kb on + strand, within HGI48_RS20600at 4601.781 kb on + strandat 4601.782 kb on - strand, within HGI48_RS20600at 4601.782 kb on - strand, within HGI48_RS20600at 4601.782 kb on - strand, within HGI48_RS20600at 4601.782 kb on - strand, within HGI48_RS20600at 4601.820 kb on - strand, within HGI48_RS20600at 4602.252 kb on + strandat 4602.252 kb on + strand, within HGI48_RS20600at 4602.253 kb on - strand, within HGI48_RS20600at 4602.253 kb on - strand, within HGI48_RS20600

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,599,681 + +0.8
4,599,681 + +1.1
4,599,682 - -0.3
4,599,682 - -1.2
4,599,754 - -0.1
4,599,772 + -1.5
4,599,772 + -2.0
4,599,773 - -0.8
4,599,773 - -0.9
4,599,773 - -0.2
4,599,773 - +0.1
4,599,780 + -1.2
4,599,780 + -0.1
4,599,780 + -0.8
4,599,781 - -0.6
4,599,787 + +0.2
4,599,787 + -0.7
4,599,787 + -1.4
4,599,787 + -2.4
4,599,787 + -1.0
4,599,788 - -2.7
4,599,788 - +0.1
4,599,799 + -2.5
4,599,799 + -1.2
4,599,800 - -0.2
4,599,809 - -0.2
4,599,828 - -0.5
4,599,837 + +0.8
4,599,837 + -1.6
4,599,837 + -1.2
4,599,837 + +0.8
4,599,837 + +1.3
4,599,837 + -0.2
4,599,837 + -1.1
4,599,837 + -1.8
4,599,837 + -1.5
4,599,838 - -1.8
4,599,838 - -0.5
4,599,838 - -0.5
4,599,838 - +0.5
4,599,838 - -0.8
4,599,838 - +0.4
4,599,838 - -0.4
4,599,838 - +1.2
4,599,838 - -0.7
4,599,838 - -1.2
4,599,838 - -0.2
4,599,844 - -1.1
4,599,850 + -2.0
4,599,853 + -1.2
4,599,853 + -1.5
4,599,853 + -0.8
4,599,853 + -1.3
4,599,854 - -0.7
4,599,859 + -2.4
4,599,859 + -0.8
4,599,860 - -1.4
4,599,869 + +0.5
4,599,908 + -2.6
4,600,006 + HGI48_RS20590 0.26 +0.8
4,600,006 + HGI48_RS20590 0.26 -2.0
4,600,006 + HGI48_RS20590 0.26 +0.5
4,600,007 - HGI48_RS20590 0.26 +0.4
4,600,007 - HGI48_RS20590 0.26 +0.5
4,600,007 - HGI48_RS20590 0.26 +0.4
4,600,007 - HGI48_RS20590 0.26 -0.2
4,600,007 - HGI48_RS20590 0.26 +0.6
4,600,007 - HGI48_RS20590 0.26 -1.9
4,600,007 - HGI48_RS20590 0.26 +2.3
4,600,007 - HGI48_RS20590 0.26 +0.9
4,600,029 + HGI48_RS20590 0.30 -1.5
4,600,029 + HGI48_RS20590 0.30 -2.3
4,600,030 - HGI48_RS20590 0.30 +0.2
4,600,030 - HGI48_RS20590 0.30 -2.2
4,600,030 - HGI48_RS20590 0.30 -1.7
4,600,030 - HGI48_RS20590 0.30 -0.3
4,600,030 - +2.6
4,600,036 - HGI48_RS20590 0.31 +0.1
4,600,150 + +0.2
4,600,151 - HGI48_RS20590 0.51 +0.1
4,600,151 - +1.2
4,600,317 + HGI48_RS20590 0.79 -0.2
4,600,413 + +1.0
4,600,453 + -0.5
4,600,453 + -0.4
4,600,454 - +0.8
4,600,454 - +0.8
4,600,454 - -0.8
4,600,454 - +1.8
4,600,461 + -1.1
4,600,461 + -0.8
4,600,461 + +1.5
4,600,462 - +0.4
4,600,462 - -1.8
4,600,466 + -0.6
4,600,466 + -0.2
4,600,466 + -0.8
4,600,466 + +0.0
4,600,467 - +0.7
4,600,467 - -1.8
4,600,467 - -0.2
4,600,474 + -1.5
4,600,475 - -0.1
4,600,475 - +0.0
4,600,505 + -0.8
4,600,506 - -1.2
4,600,506 - -2.2
4,600,529 + -2.4
4,600,529 + -1.1
4,600,529 + -1.5
4,600,529 + -1.2
4,600,530 - +0.8
4,600,530 - -0.5
4,600,535 + +1.4
4,600,536 - -1.5
4,600,536 - -0.7
4,600,570 - +0.6
4,600,576 - +0.2
4,600,579 + +0.3
4,600,603 + -2.5
4,600,604 - -2.2
4,600,604 - -2.5
4,600,604 - -1.5
4,600,604 - -0.8
4,600,604 - -1.2
4,600,610 + +1.2
4,600,631 + -2.4
4,600,750 - HGI48_RS20595 0.16 +1.4
4,600,780 - -0.8
4,600,789 + HGI48_RS20595 0.22 -0.9
4,600,925 + HGI48_RS20595 0.41 -1.5
4,601,133 - HGI48_RS20595 0.71 -1.1
4,601,236 + -0.8
4,601,236 + HGI48_RS20595 0.86 -2.2
4,601,236 + HGI48_RS20595 0.86 -1.5
4,601,236 + HGI48_RS20595 0.86 -0.1
4,601,236 + HGI48_RS20595 0.86 -0.5
4,601,236 + HGI48_RS20595 0.86 -4.6
4,601,236 + HGI48_RS20595 0.86 -1.8
4,601,236 + +0.2
4,601,236 + HGI48_RS20595 0.86 -1.5
4,601,237 - HGI48_RS20595 0.86 +0.5
4,601,237 - HGI48_RS20595 0.86 -2.9
4,601,237 - HGI48_RS20595 0.86 -3.4
4,601,237 - HGI48_RS20595 0.86 +0.0
4,601,237 - +3.0
4,601,237 - -0.8
4,601,237 - HGI48_RS20595 0.86 -3.3
4,601,237 - +0.8
4,601,237 - HGI48_RS20595 0.86 -1.2
4,601,290 + +0.7
4,601,290 + -1.5
4,601,312 + -1.2
4,601,313 - +0.2
4,601,351 + -1.8
4,601,351 + -1.1
4,601,351 + -0.8
4,601,351 + +1.5
4,601,351 + +0.2
4,601,351 + -0.0
4,601,352 - +1.5
4,601,546 - HGI48_RS20600 0.14 -1.0
4,601,548 + HGI48_RS20600 0.14 -0.6
4,601,549 - HGI48_RS20600 0.14 +1.3
4,601,734 + HGI48_RS20600 0.28 -1.5
4,601,735 - HGI48_RS20600 0.28 -1.2
4,601,772 + HGI48_RS20600 0.31 -1.7
4,601,772 + HGI48_RS20600 0.31 -0.3
4,601,781 + HGI48_RS20600 0.31 +0.7
4,601,781 + HGI48_RS20600 0.31 -1.2
4,601,781 + -0.8
4,601,782 - HGI48_RS20600 0.31 +0.1
4,601,782 - HGI48_RS20600 0.31 +0.7
4,601,782 - HGI48_RS20600 0.31 -1.5
4,601,782 - HGI48_RS20600 0.31 +0.8
4,601,820 - HGI48_RS20600 0.34 -0.5
4,602,252 + +0.8
4,602,252 + HGI48_RS20600 0.66 +1.4
4,602,253 - HGI48_RS20600 0.66 +0.3
4,602,253 - HGI48_RS20600 0.66 +0.0

Or see this region's nucleotide sequence