Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20375

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,554,029	+				-0.1
4,554,029	+				-0.2
4,554,029	+				+0.3
4,554,030	-				-0.0
4,554,031	+				-0.1
4,554,059	+				-0.5
4,554,088	+				+0.8
4,554,089	-				-2.8
4,554,092	+				+0.2
4,554,115	+				-3.9
4,554,140	+				-2.9
4,554,140	+				-1.2
4,554,195	-		HGI48_RS20375	0.12	-0.2
4,554,204	+		HGI48_RS20375	0.13	-4.4
4,554,204	+		HGI48_RS20375	0.13	-1.8
4,554,204	+				+0.8
4,554,204	+		HGI48_RS20375	0.13	-2.2
4,554,205	-		HGI48_RS20375	0.13	-2.0
4,554,205	-		HGI48_RS20375	0.13	-2.4
4,554,267	+		HGI48_RS20375	0.20	-1.0
4,554,268	-		HGI48_RS20375	0.20	-1.2
4,554,268	-		HGI48_RS20375	0.20	-2.8
4,554,308	-		HGI48_RS20375	0.25	-1.5
4,554,308	-		HGI48_RS20375	0.25	-1.2
4,554,345	+		HGI48_RS20375	0.29	-2.2
4,554,345	+		HGI48_RS20375	0.29	-2.9
4,554,345	+		HGI48_RS20375	0.29	-0.8
4,554,345	+		HGI48_RS20375	0.29	-0.4
4,554,345	+		HGI48_RS20375	0.29	-0.8
4,554,345	+		HGI48_RS20375	0.29	-1.4
4,554,346	-		HGI48_RS20375	0.29	-2.0
4,554,346	-		HGI48_RS20375	0.29	-2.9
4,554,346	-		HGI48_RS20375	0.29	-1.5
4,554,363	+		HGI48_RS20375	0.31	-1.5
4,554,363	+		HGI48_RS20375	0.31	-3.0
4,554,363	+		HGI48_RS20375	0.31	-1.2
4,554,364	-		HGI48_RS20375	0.31	-1.5
4,554,364	-		HGI48_RS20375	0.31	-0.6
4,554,364	-		HGI48_RS20375	0.31	-1.2
4,554,364	-		HGI48_RS20375	0.31	-1.2
4,554,364	-		HGI48_RS20375	0.31	-2.4
4,554,424	+		HGI48_RS20375	0.38	-1.5
4,554,425	-		HGI48_RS20375	0.38	-0.6
4,554,501	+		HGI48_RS20375	0.47	-1.2
4,554,501	+		HGI48_RS20375	0.47	-1.5
4,554,528	+		HGI48_RS20375	0.50	-2.0
4,554,529	-		HGI48_RS20375	0.50	-1.8
4,554,529	-		HGI48_RS20375	0.50	-4.7
4,554,529	-		HGI48_RS20375	0.50	-2.8
4,554,529	-				+0.8
4,554,529	-				-0.8
4,554,530	+		HGI48_RS20375	0.50	-2.0
4,554,530	+		HGI48_RS20375	0.50	-2.0
4,554,530	+		HGI48_RS20375	0.50	-1.5
4,554,530	+				+0.8
4,554,546	+		HGI48_RS20375	0.52	-2.2
4,554,547	-		HGI48_RS20375	0.52	-2.9
4,554,636	+		HGI48_RS20375	0.62	-1.5
4,554,636	+		HGI48_RS20375	0.62	-0.5
4,554,636	+		HGI48_RS20375	0.62	-1.8
4,554,678	+		HGI48_RS20375	0.67	-2.2
4,554,679	-				+0.2
4,554,679	-		HGI48_RS20375	0.67	-1.5
4,554,681	+		HGI48_RS20375	0.68	-1.5
4,554,681	+		HGI48_RS20375	0.68	-2.2
4,554,682	-		HGI48_RS20375	0.68	-3.9
4,554,694	+		HGI48_RS20375	0.69	-2.1
4,554,694	+		HGI48_RS20375	0.69	-1.2
4,554,695	-		HGI48_RS20375	0.69	-1.8
4,554,735	+				-0.8
4,554,735	+		HGI48_RS20375	0.74	-5.4
4,554,735	+		HGI48_RS20375	0.74	-4.1
4,554,736	-		HGI48_RS20375	0.74	-1.0
4,554,756	+		HGI48_RS20375	0.76	+0.6
4,554,757	-		HGI48_RS20375	0.76	-1.2
4,554,806	+				+0.2
4,554,807	-		HGI48_RS20375	0.82	-2.4
4,554,807	-				-0.8
4,554,807	-		HGI48_RS20375	0.82	+0.4
4,554,807	-		HGI48_RS20375	0.82	-2.8
4,554,810	+		HGI48_RS20375	0.82	-0.4
4,554,811	-		HGI48_RS20375	0.82	-1.4
4,554,811	-		HGI48_RS20375	0.82	-2.9
4,554,812	+		HGI48_RS20375	0.83	+0.1
4,554,813	-				-0.8
4,554,813	-		HGI48_RS20375	0.83	-2.9
4,554,813	-				-0.8
4,554,813	-		HGI48_RS20375	0.83	-2.0
4,554,817	+		HGI48_RS20375	0.83	-0.8
4,554,818	-		HGI48_RS20375	0.83	+0.1
4,554,818	-		HGI48_RS20375	0.83	-1.2
4,554,818	-		HGI48_RS20375	0.83	+0.8
4,554,848	+		HGI48_RS20375	0.87	-1.5
4,554,905	-				-2.0
4,554,916	+				-3.0
4,554,916	+				-0.8
4,554,916	+				-2.0
4,554,916	+				-1.9
4,554,917	-				-0.8
4,554,917	-				-0.3
4,554,918	+				+1.0
4,554,918	+				-2.8
4,554,918	+				-1.0
4,554,919	-				-1.2
4,554,933	+				-1.8
4,554,934	-				-1.0
4,554,936	+				-3.4
4,554,936	+				-1.2
4,554,937	-				+0.2
4,554,937	-				-3.9
4,554,963	+				-0.2
4,554,963	+				-2.0
4,554,963	+				+0.4
4,554,964	-				-0.2
4,554,965	+				-1.8
4,554,965	+				-0.2
4,554,965	+				-2.0
4,554,966	-				-0.4
4,554,966	-				+0.5
4,554,966	-				-2.2
4,554,975	+				-1.2
4,554,976	-				+1.8
4,555,003	+				+0.8
4,555,004	-				+0.2
4,555,060	+				-0.5
4,555,060	+				-0.6
4,555,090	+				+0.9
4,555,091	-				+1.0
4,555,091	-				-0.0
4,555,091	-				-0.8
4,555,118	+		HGI48_RS20380	0.11	-0.6
4,555,118	+		HGI48_RS20380	0.11	+0.3
4,555,118	+				+2.6
4,555,118	+		HGI48_RS20380	0.11	+0.1
4,555,118	+		HGI48_RS20380	0.11	+1.3
4,555,119	-		HGI48_RS20380	0.11	-0.8
4,555,119	-		HGI48_RS20380	0.11	-1.0
4,555,122	+		HGI48_RS20380	0.11	+0.2
4,555,122	+		HGI48_RS20380	0.11	-1.5
4,555,128	+		HGI48_RS20380	0.12	-1.2
4,555,128	+		HGI48_RS20380	0.12	-1.8
4,555,128	+		HGI48_RS20380	0.12	-0.4
4,555,129	-		HGI48_RS20380	0.12	+0.8
4,555,129	-		HGI48_RS20380	0.12	-0.5
4,555,129	-		HGI48_RS20380	0.12	+1.1
4,555,213	+		HGI48_RS20380	0.16	-1.0
4,555,213	+		HGI48_RS20380	0.16	-1.0
4,555,225	+		HGI48_RS20380	0.17	+0.3
4,555,225	+		HGI48_RS20380	0.17	-0.6
4,555,225	+		HGI48_RS20380	0.17	+0.1
4,555,226	-		HGI48_RS20380	0.17	+0.3
4,555,226	-		HGI48_RS20380	0.17	+1.8
4,555,226	-		HGI48_RS20380	0.17	+0.8
4,555,240	-		HGI48_RS20380	0.18	+0.5
4,555,246	-		HGI48_RS20380	0.18	-1.2
4,555,246	-		HGI48_RS20380	0.18	+0.2
4,555,304	+		HGI48_RS20380	0.21	+0.5
4,555,305	-		HGI48_RS20380	0.21	-0.7
4,555,319	+		HGI48_RS20380	0.22	-0.6
4,555,320	-		HGI48_RS20380	0.22	+2.8
4,555,327	+		HGI48_RS20380	0.22	+1.3
4,555,327	+		HGI48_RS20380	0.22	-0.1
4,555,327	+		HGI48_RS20380	0.22	-3.0
4,555,327	+		HGI48_RS20380	0.22	-2.0
4,555,328	-				+1.8
4,555,403	+		HGI48_RS20380	0.26	-0.4
4,555,444	+		HGI48_RS20380	0.28	+0.6
4,555,444	+		HGI48_RS20380	0.28	-1.7
4,555,460	-		HGI48_RS20380	0.29	-0.2
4,555,460	-		HGI48_RS20380	0.29	+0.1
4,555,488	+		HGI48_RS20380	0.31	-0.4
4,555,488	+		HGI48_RS20380	0.31	+0.6
4,555,488	+		HGI48_RS20380	0.31	-0.4
4,555,489	-		HGI48_RS20380	0.31	+0.9
4,555,490	+		HGI48_RS20380	0.31	-1.0
4,555,490	+		HGI48_RS20380	0.31	+0.9
4,555,490	+				-0.8
4,555,490	+		HGI48_RS20380	0.31	-0.5
4,555,491	-		HGI48_RS20380	0.31	-0.0
4,555,491	-				+0.8
4,555,491	-		HGI48_RS20380	0.31	+1.0
4,555,491	-		HGI48_RS20380	0.31	+0.3
4,555,504	+		HGI48_RS20380	0.32	+2.0
4,555,504	+		HGI48_RS20380	0.32	-0.2
4,555,504	+		HGI48_RS20380	0.32	-0.5
4,555,504	+		HGI48_RS20380	0.32	-1.4
4,555,505	-		HGI48_RS20380	0.32	+0.0
4,555,505	-		HGI48_RS20380	0.32	-0.8
4,555,505	-				+2.1
4,555,505	-		HGI48_RS20380	0.32	-0.5
4,555,513	+				+0.8
4,555,514	-		HGI48_RS20380	0.32	+0.1
4,555,514	-		HGI48_RS20380	0.32	-1.2
4,555,515	+		HGI48_RS20380	0.32	+0.2
4,555,516	-		HGI48_RS20380	0.32	+1.1
4,555,585	+		HGI48_RS20380	0.36	+1.3
4,555,586	-		HGI48_RS20380	0.36	-2.7
4,555,586	-		HGI48_RS20380	0.36	-1.2
4,555,586	-		HGI48_RS20380	0.36	+0.6
4,555,588	+		HGI48_RS20380	0.36	+0.8
4,555,588	+		HGI48_RS20380	0.36	+0.2
4,555,588	+		HGI48_RS20380	0.36	-2.4
4,555,589	-		HGI48_RS20380	0.36	-1.5
4,555,609	+				-0.8
4,555,609	+		HGI48_RS20380	0.37	+0.5
4,555,610	-		HGI48_RS20380	0.37	+0.1
4,555,669	+		HGI48_RS20380	0.40	-0.7
4,555,669	+		HGI48_RS20380	0.40	+0.1
4,555,669	+		HGI48_RS20380	0.40	-0.2
4,555,669	+		HGI48_RS20380	0.40	-0.6
4,555,669	+		HGI48_RS20380	0.40	-3.1
4,555,669	+		HGI48_RS20380	0.40	+0.1
4,555,669	+				-0.2
4,555,670	-		HGI48_RS20380	0.41	+1.8
4,555,670	-		HGI48_RS20380	0.41	+1.0
4,555,670	-		HGI48_RS20380	0.41	-0.6
4,555,670	-		HGI48_RS20380	0.41	+1.0
4,555,670	-		HGI48_RS20380	0.41	-0.7
4,555,670	-		HGI48_RS20380	0.41	-1.8
4,555,671	+				+0.8
4,555,671	+		HGI48_RS20380	0.41	-1.5
4,555,671	+		HGI48_RS20380	0.41	-2.0
4,555,671	+				+2.0
4,555,672	-		HGI48_RS20380	0.41	+0.3
4,555,672	-		HGI48_RS20380	0.41	+0.8
4,555,672	-		HGI48_RS20380	0.41	+0.2
4,555,673	+		HGI48_RS20380	0.41	-1.2
4,555,673	+		HGI48_RS20380	0.41	+0.2
4,555,674	-		HGI48_RS20380	0.41	-0.8
4,555,674	-		HGI48_RS20380	0.41	+0.1
4,555,674	-				+1.5
4,555,681	+		HGI48_RS20380	0.41	-0.9
4,555,684	+		HGI48_RS20380	0.41	-1.5
4,555,685	-		HGI48_RS20380	0.41	-0.7
4,555,696	-		HGI48_RS20380	0.42	-0.4
4,555,696	-		HGI48_RS20380	0.42	+0.1
4,555,804	+		HGI48_RS20380	0.48	+0.4
4,555,804	+		HGI48_RS20380	0.48	-2.5
4,555,805	-		HGI48_RS20380	0.48	-0.6
4,555,805	-		HGI48_RS20380	0.48	-0.2
4,555,806	+		HGI48_RS20380	0.48	-0.2
4,555,806	+				+0.2
4,555,806	+		HGI48_RS20380	0.48	-1.5
4,555,807	-		HGI48_RS20380	0.48	-0.5
4,555,807	-		HGI48_RS20380	0.48	-2.2
4,555,807	-		HGI48_RS20380	0.48	+0.3
4,555,807	-				+1.8
4,555,807	-		HGI48_RS20380	0.48	-0.2
4,555,807	-		HGI48_RS20380	0.48	+1.1
4,555,807	-		HGI48_RS20380	0.48	+0.4
4,555,807	-		HGI48_RS20380	0.48	+0.6
4,555,816	+		HGI48_RS20380	0.48	-1.2
4,555,863	+		HGI48_RS20380	0.51	+1.1
4,555,863	+		HGI48_RS20380	0.51	-0.4
4,555,864	-		HGI48_RS20380	0.51	+0.6
4,555,867	+				+0.8
4,555,867	+		HGI48_RS20380	0.51	+0.2
4,555,867	+		HGI48_RS20380	0.51	-0.8
4,555,868	-		HGI48_RS20380	0.51	+0.2
4,555,868	-		HGI48_RS20380	0.51	+0.4
4,555,868	-		HGI48_RS20380	0.51	-0.6
4,555,869	+				-0.2
4,555,869	+		HGI48_RS20380	0.51	-0.3
4,555,870	-		HGI48_RS20380	0.51	-0.2
4,555,870	-		HGI48_RS20380	0.51	-0.8
4,555,888	-		HGI48_RS20380	0.52	+0.4
4,555,895	-		HGI48_RS20380	0.52	-0.2
4,555,931	+		HGI48_RS20380	0.54	-0.2
4,555,932	-		HGI48_RS20380	0.54	-2.7
4,555,956	+		HGI48_RS20380	0.56	+0.8
4,555,956	+		HGI48_RS20380	0.56	-1.8
4,555,956	+		HGI48_RS20380	0.56	-1.5
4,555,956	+		HGI48_RS20380	0.56	-0.1
4,555,957	-		HGI48_RS20380	0.56	+0.1
4,555,957	-		HGI48_RS20380	0.56	-0.4