Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20305

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,540,296	+				-0.4
4,540,369	+				+1.5
4,540,369	+				-1.0
4,540,370	-				-2.9
4,540,482	-		HGI48_RS20300	0.21	-1.5
4,540,482	-		HGI48_RS20300	0.21	+0.4
4,540,482	-				+0.8
4,540,482	-		HGI48_RS20300	0.21	-0.3
4,540,501	+		HGI48_RS20300	0.23	-0.4
4,540,501	+		HGI48_RS20300	0.23	-0.8
4,540,502	-		HGI48_RS20300	0.23	-2.4
4,540,616	-		HGI48_RS20300	0.35	-0.6
4,540,652	+		HGI48_RS20300	0.39	-1.8
4,540,652	+		HGI48_RS20300	0.39	-0.4
4,540,653	-		HGI48_RS20300	0.39	-1.2
4,540,653	-		HGI48_RS20300	0.39	+0.2
4,540,653	-		HGI48_RS20300	0.39	-1.8
4,540,653	-		HGI48_RS20300	0.39	+0.9
4,540,730	+		HGI48_RS20300	0.47	+0.4
4,540,730	+		HGI48_RS20300	0.47	+0.8
4,540,730	+		HGI48_RS20300	0.47	-2.2
4,540,731	-		HGI48_RS20300	0.47	-1.5
4,540,731	-		HGI48_RS20300	0.47	-0.1
4,540,731	-				+3.1
4,540,731	-		HGI48_RS20300	0.47	-1.2
4,540,731	-		HGI48_RS20300	0.47	+2.5
4,540,731	-		HGI48_RS20300	0.47	-0.8
4,540,731	-		HGI48_RS20300	0.47	+1.4
4,540,731	-		HGI48_RS20300	0.47	-1.3
4,540,764	+		HGI48_RS20300	0.51	+0.5
4,540,906	+		HGI48_RS20300	0.66	-0.8
4,540,906	+		HGI48_RS20300	0.66	-0.8
4,540,906	+				+0.8
4,540,906	+		HGI48_RS20300	0.66	-0.5
4,540,906	+		HGI48_RS20300	0.66	+1.2
4,540,906	+		HGI48_RS20300	0.66	-0.1
4,540,906	+		HGI48_RS20300	0.66	-1.2
4,540,907	-		HGI48_RS20300	0.66	-0.7
4,540,907	-		HGI48_RS20300	0.66	-1.2
4,540,907	-		HGI48_RS20300	0.66	+0.3
4,540,907	-		HGI48_RS20300	0.66	+0.2
4,540,921	+		HGI48_RS20300	0.68	-1.0
4,540,922	-		HGI48_RS20300	0.68	+1.1
4,540,922	-		HGI48_RS20300	0.68	-0.8
4,540,937	+		HGI48_RS20300	0.69	-0.2
4,540,937	+		HGI48_RS20300	0.69	-0.2
4,540,937	+		HGI48_RS20300	0.69	-1.2
4,540,937	+		HGI48_RS20300	0.69	+0.2
4,540,937	+		HGI48_RS20300	0.69	+1.4
4,540,937	+		HGI48_RS20300	0.69	-0.4
4,540,937	+		HGI48_RS20300	0.69	-0.2
4,540,937	+		HGI48_RS20300	0.69	-0.4
4,540,937	+		HGI48_RS20300	0.69	-0.5
4,540,938	-		HGI48_RS20300	0.70	-0.7
4,540,938	-		HGI48_RS20300	0.70	+0.7
4,540,938	-		HGI48_RS20300	0.70	+0.3
4,541,003	+		HGI48_RS20300	0.77	-1.5
4,541,003	+		HGI48_RS20300	0.77	+0.5
4,541,003	+		HGI48_RS20300	0.77	+0.8
4,541,004	-		HGI48_RS20300	0.77	-0.1
4,541,004	-		HGI48_RS20300	0.77	+1.8
4,541,016	+		HGI48_RS20300	0.78	-1.7
4,541,016	+		HGI48_RS20300	0.78	+0.1
4,541,017	-		HGI48_RS20300	0.78	-0.2
4,541,017	-		HGI48_RS20300	0.78	+0.3
4,541,017	-		HGI48_RS20300	0.78	+0.5
4,541,096	+		HGI48_RS20300	0.87	+0.2
4,541,096	+		HGI48_RS20300	0.87	-0.2
4,541,096	+		HGI48_RS20300	0.87	-1.5
4,541,097	-		HGI48_RS20300	0.87	-1.2
4,541,199	+				+0.8
4,541,199	+				+1.2
4,541,199	+				-1.0
4,541,199	+				-1.0
4,541,200	-				+2.1
4,541,200	-				-0.8
4,541,201	+				+1.5
4,541,201	+				+0.8
4,541,201	+				-1.2
4,541,201	+				+0.6
4,541,201	+				-0.2
4,541,201	+				+0.2
4,541,201	+				-0.5
4,541,201	+				-0.5
4,541,202	-				-1.5
4,541,202	-				+0.8
4,541,202	-				+2.0
4,541,202	-				+0.4
4,541,202	-				+0.2
4,541,202	-				-0.6
4,541,202	-				-0.1
4,541,202	-				-1.2
4,541,202	-				-1.5
4,541,202	-				+0.6
4,541,202	-				+0.1
4,541,202	-				+2.8
4,541,254	+				+0.2
4,541,254	+				-1.2
4,541,254	+				-0.0
4,541,254	+				-0.8
4,541,254	+				-0.2
4,541,254	+				-2.5
4,541,255	-				-0.4
4,541,255	-				+0.1
4,541,255	-				-0.2
4,541,255	-				+0.2
4,541,255	-				-0.5
4,541,311	+		HGI48_RS20305	0.26	+1.0
4,541,311	+		HGI48_RS20305	0.26	-1.2
4,541,311	+		HGI48_RS20305	0.26	+0.2
4,541,312	-		HGI48_RS20305	0.26	-1.2
4,541,326	+		HGI48_RS20305	0.31	+0.8
4,541,327	-		HGI48_RS20305	0.32	+0.6
4,541,358	+				+1.5
4,541,358	+		HGI48_RS20305	0.44	+0.1
4,541,358	+		HGI48_RS20305	0.44	+0.1
4,541,359	-		HGI48_RS20305	0.44	-0.7
4,541,508	+				-0.1
4,541,509	-				-1.2
4,541,509	-				-0.8
4,541,509	-				-1.8
4,541,509	-				+1.0
4,541,521	+				-2.7
4,541,521	+				-2.8
4,541,532	-				+0.6
4,541,667	-				-1.0
4,541,749	+		HGI48_RS20310	0.14	-1.4
4,541,894	+		HGI48_RS20310	0.23	-1.5
4,541,895	-		HGI48_RS20310	0.23	+0.6
4,541,901	+		HGI48_RS20310	0.23	+0.2
4,541,901	+		HGI48_RS20310	0.23	-1.5
4,542,011	+		HGI48_RS20310	0.30	+0.0
4,542,011	+		HGI48_RS20310	0.30	-1.2
4,542,011	+		HGI48_RS20310	0.30	-0.5
4,542,011	+		HGI48_RS20310	0.30	-0.1
4,542,011	+		HGI48_RS20310	0.30	+0.4
4,542,011	+		HGI48_RS20310	0.30	-2.5
4,542,011	+				+0.8
4,542,011	+		HGI48_RS20310	0.30	-1.8
4,542,011	+		HGI48_RS20310	0.30	-0.4
4,542,011	+		HGI48_RS20310	0.30	+0.3
4,542,012	-		HGI48_RS20310	0.30	+0.5
4,542,012	-		HGI48_RS20310	0.30	+0.4
4,542,012	-		HGI48_RS20310	0.30	+1.1
4,542,012	-		HGI48_RS20310	0.30	-0.1
4,542,012	-				+0.8
4,542,012	-		HGI48_RS20310	0.30	+0.5
4,542,012	-		HGI48_RS20310	0.30	-1.3
4,542,012	-		HGI48_RS20310	0.30	-2.0
4,542,012	-		HGI48_RS20310	0.30	+0.9
4,542,012	-		HGI48_RS20310	0.30	-0.5
4,542,074	+		HGI48_RS20310	0.34	-1.5
4,542,110	-		HGI48_RS20310	0.36	+0.1
4,542,134	-		HGI48_RS20310	0.37	+0.3
4,542,263	+		HGI48_RS20310	0.45	-0.2
4,542,263	+		HGI48_RS20310	0.45	+1.2
4,542,436	+		HGI48_RS20310	0.56	-0.4
4,542,436	+		HGI48_RS20310	0.56	-0.5
4,542,436	+		HGI48_RS20310	0.56	+0.8
4,542,437	-		HGI48_RS20310	0.56	-1.1
4,542,437	-		HGI48_RS20310	0.56	-0.9
4,542,437	-		HGI48_RS20310	0.56	+0.1
4,542,437	-		HGI48_RS20310	0.56	+0.1
4,542,439	+		HGI48_RS20310	0.56	-0.2